mRNA_H-canaliculatus_F_contig113.1166.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig113.1166.1
Unique NamemRNA_H-canaliculatus_F_contig113.1166.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig113.1166.1 vs. uniprot
Match: A0A6I5X8N5_9MICO (DUF4082 domain-containing protein n=2 Tax=Tetrasphaera sp. HKS02 TaxID=1813880 RepID=A0A6I5X8N5_9MICO)

HSP 1 Score: 70.5 bits (171), Expect = 6.050e-12
Identity = 39/92 (42.39%), Postives = 53/92 (57.61%), Query Frame = 1
Query:   37 PEVPTGVYGTQSGVGMAIISWEAPEDNNSTITMYEVIFSRTDLDEGGINATGSPAPTSVNVSNLITGSIYTFFVRAVNSVGSSDKSEGSDEV 312
            P  PTGV  T +G G A++SW AP D  S IT+Y V      + +      GSP  TSV V+ L  G+ YTF V A N++G+S +S  S++V
Sbjct: 1670 PAAPTGVSAT-AGSGSAVVSWTAPSDGGSGITLYTVTPYVGSVAQAPATVNGSPPATSVAVTGLTNGTAYTFTVSATNAIGTSPESAASNQV 1760          
BLAST of mRNA_H-canaliculatus_F_contig113.1166.1 vs. uniprot
Match: A0A4Q2KRG9_9MICO (Tandem-95 repeat protein n=3 Tax=Actinomycetia TaxID=1760 RepID=A0A4Q2KRG9_9MICO)

HSP 1 Score: 59.3 bits (142), Expect = 4.990e-8
Identity = 36/101 (35.64%), Postives = 52/101 (51.49%), Query Frame = 1
Query:    4 SSVTIIAAQDVPEVPTGVYGTQSGVGMAIISWEAPEDNNSTITMYEVIFSRTDLDEGGINATGSPAPTSVNVSNLITGSIYTFFVRAVNSVGSSDKSEGSD 306
            +++ + AA D P  PT      +G   A ++W AP +NNS IT Y V ++    D        S A     +  L  G+ YTF VRAVN++G+S  S G+D
Sbjct: 1453 ATIIVRAAPDAPNAPT----VNAGDAAATVTWRAPANNNSPITRYVVEYNGRTAD-----FPASAAGVGQRIDGLTNGTTYTFTVRAVNAIGTSAPSPGTD 1544          
BLAST of mRNA_H-canaliculatus_F_contig113.1166.1 vs. uniprot
Match: A0A512DCM4_9CELL (Uncharacterized protein n=1 Tax=Cellulomonas aerilata TaxID=515326 RepID=A0A512DCM4_9CELL)

HSP 1 Score: 57.0 bits (136), Expect = 3.160e-7
Identity = 39/93 (41.94%), Postives = 52/93 (55.91%), Query Frame = 1
Query:   34 VPEVPTGVYGTQSGVGMAIISWEAPEDNNSTITMYEVIFSRTDLDEGGINATGSPAPTSVNVSNLITGSIYTFFVRAVNSVGSSDKSEGSDEV 312
            VP+ PT V  T+ G G A +SW AP D+ S IT+Y V+ S      GG  AT + A T+ +V +L  G  YTF V A ++ G+S  S  S  V
Sbjct:  630 VPDAPTSVTATR-GSGSATVSWAAPADHGSPITLYTVVAS-----PGG--ATVTTARTTASVGSLTNGVPYTFTVTATSAAGTSPASAPSAPV 714          
BLAST of mRNA_H-canaliculatus_F_contig113.1166.1 vs. uniprot
Match: UPI00145A461E (Ig-like domain-containing protein n=1 Tax=Agromyces sp. H66 TaxID=2529859 RepID=UPI00145A461E)

HSP 1 Score: 55.8 bits (133), Expect = 8.230e-7
Identity = 38/100 (38.00%), Postives = 54/100 (54.00%), Query Frame = 1
Query:   10 VTIIAAQ--DVPEVPTGVYGTQSGVGMAIISWEAPEDNNSTITMYEVIF-SRTDLDEGGINATGSPAPTSVNVSNLITGSIYTFFVRAVNSVGSSDKSEG 300
            VT+I     D P+ PT   G     G A ++W+AP  NN+ IT Y V + +RTD      +   S A  +  ++ L  G+ YTF VRAVN +G+S+ S G
Sbjct: 1469 VTVIVRDRPDQPKAPTATAGD----GYADVTWQAPAPNNAPITEYLVSYGTRTD------SFPASAAGLTQRINGLTNGTAYTFTVRAVNEIGTSEPSAG 1558          
BLAST of mRNA_H-canaliculatus_F_contig113.1166.1 vs. uniprot
Match: A0A6L6ERB5_9ACTN (Uncharacterized protein n=3 Tax=root TaxID=1 RepID=A0A6L6ERB5_9ACTN)

HSP 1 Score: 55.5 bits (132), Expect = 1.140e-6
Identity = 38/88 (43.18%), Postives = 45/88 (51.14%), Query Frame = 1
Query:   19 IAAQDVPEVPTGVYGTQSGVGMAIISWEAPEDNN-STITMYEVIFSRTDLDEGGINATGSPAPTSVNVSNLITGSIYTFFVRAVNSVG 279
            I    VP+ PT V G+ SGVG   +SW AP DN  S +T Y V+        GG   T + A T V VS L +   YTF V A N VG
Sbjct: 1079 IVPASVPDAPTAVAGSISGVGSVSVSWSAPLDNGGSVVTRYSVVAF-----PGGRTCTTTGATTCV-VSGLTSAVNYTFRVSATNRVG 1160          
BLAST of mRNA_H-canaliculatus_F_contig113.1166.1 vs. uniprot
Match: UPI001438AB8D (S-layer homology domain-containing protein n=1 Tax=Paenibacillus sp. HB172176 TaxID=2493690 RepID=UPI001438AB8D)

HSP 1 Score: 54.7 bits (130), Expect = 1.970e-6
Identity = 40/99 (40.40%), Postives = 57/99 (57.58%), Query Frame = 1
Query:   19 IAAQDVPEVPTGVYGTQSGVGMAIISWEAP-EDNNSTITMYEVIFSRTDLDEGGINATGSPAPTSVNVSNLITGSIYTFFVRAVNSVGSSDKSEGSDEV 312
            +   DVPE P  V    SG   A I++EAP +D  S IT YE+  S ++L  G + A  +     + V+ L+ GS YTF V+A+N+VGSS+ S  S+ V
Sbjct:   57 VTLPDVPEAPRNVVAV-SGNHRAEITFEAPLQDGGSPITGYEIFDSNSNL-VGSVGADSN----FLLVTGLVNGSSYTFTVKALNAVGSSEASAPSNAV 149          
BLAST of mRNA_H-canaliculatus_F_contig113.1166.1 vs. uniprot
Match: A0A4Q9DX44_9BACL (Uncharacterized protein n=2 Tax=Paenibacillus thalictri TaxID=2527873 RepID=A0A4Q9DX44_9BACL)

HSP 1 Score: 54.7 bits (130), Expect = 2.080e-6
Identity = 36/94 (38.30%), Postives = 55/94 (58.51%), Query Frame = 1
Query:   34 VPEVPTGVYGTQSGVGMAIISWEAPEDNN-STITMYEVIFSRTDLDEGGINATGSPAPTSVNVSNLITGSIYTFFVRAVNSVGSSDKSEGSDEV 312
            VP+ P  V  T +G+G A +++ AP DN  + IT Y V  S      G +  TG+ +P  + ++ L  G+ YTF V+AVN++GSS+ S  S+ V
Sbjct:  904 VPDAPANVAAT-AGIGAATVTFTAPTDNGGNAITGYIVTAS-----PGNLTMTGTASP--IVITGLTNGTSYTFTVKAVNAIGSSEPSADSNAV 989          
BLAST of mRNA_H-canaliculatus_F_contig113.1166.1 vs. uniprot
Match: A0A841SU32_9BACL (Choice-of-anchor D domain-containing protein n=4 Tax=Cohnella thailandensis TaxID=557557 RepID=A0A841SU32_9BACL)

HSP 1 Score: 51.6 bits (122), Expect = 2.520e-5
Identity = 34/92 (36.96%), Postives = 50/92 (54.35%), Query Frame = 1
Query:   37 PEVPTGVYGTQSGVGMAIISWEAPEDNNSTITMYEVIFSRTDLDEGGINATGSPAPTSVNVSNLITGSIYTFFVRAVNSVGSSDKSEGSDEV 312
            P  P  V  T +G G AI+++ AP DN   +    V+ +      GGI ATG+ +P +VN   L  G+ YTF V+A++  G+S +S  S  V
Sbjct: 1095 PAAPNNVVAT-AGNGQAIVTFTAPNDNGGNVITGYVVTAMP----GGITATGTASPITVN--GLTNGTAYTFTVKALSLGGNSAESAASQPV 1179          
BLAST of mRNA_H-canaliculatus_F_contig113.1166.1 vs. uniprot
Match: A0A3S1GQT5_9BACL (Uncharacterized protein n=1 Tax=Cohnella sp. AR92 TaxID=648716 RepID=A0A3S1GQT5_9BACL)

HSP 1 Score: 51.2 bits (121), Expect = 3.320e-5
Identity = 39/103 (37.86%), Postives = 51/103 (49.51%), Query Frame = 1
Query:    4 SSVTIIAAQDVPEVPTGVYGTQSGVGMAIISWEAPEDNNSTITMYEVIFSRTDLDEGGINATGSPAPTSVNVSNLITGSIYTFFVRAVNSVGSSDKSEGSDEV 312
            +SVT I    VP  PTGV    +G   A IS+ AP+DN S IT+Y V+ S        I  TG  +P  + V+ L  G+ Y F V   N  G+   S  S+ V
Sbjct:  248 NSVTPIG---VPGAPTGVSAV-AGNKEATISFAAPDDNGSAITVYTVVSS-----PDNITVTGGSSP--IKVTGLTNGTAYKFTVTGTNGAGTGAASSASNSV 339          
BLAST of mRNA_H-canaliculatus_F_contig113.1166.1 vs. uniprot
Match: UPI001FD15F1D (Ig-like domain-containing protein n=1 Tax=Agromyces sp. H17E-10 TaxID=2932244 RepID=UPI001FD15F1D)

HSP 1 Score: 51.2 bits (121), Expect = 3.450e-5
Identity = 34/92 (36.96%), Postives = 48/92 (52.17%), Query Frame = 1
Query:   19 IAAQDVPEVPTGVYGTQSGVGMAIISWEAPEDNNSTITMYEVIFSRTDLDEGGINATGSPAPTSVNVSNLITGSIYTFFVRAVNSVGSSDKS 294
            +  +D P+ PT + G   G G   ++W A   NNS IT Y V ++     E    AT    P    ++ L  G+ YTF VRAVN++G+SD S
Sbjct: 1485 VIVRDRPDAPT-LTGLVEGDGWIDLTWRANATNNSPITGYVVSYAGK---EATFPATADGTPQ--RITQLANGTSYTFTVRAVNAIGTSDAS 1570          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig113.1166.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6I5X8N5_9MICO6.050e-1242.39DUF4082 domain-containing protein n=2 Tax=Tetrasph... [more]
A0A4Q2KRG9_9MICO4.990e-835.64Tandem-95 repeat protein n=3 Tax=Actinomycetia Tax... [more]
A0A512DCM4_9CELL3.160e-741.94Uncharacterized protein n=1 Tax=Cellulomonas aeril... [more]
UPI00145A461E8.230e-738.00Ig-like domain-containing protein n=1 Tax=Agromyce... [more]
A0A6L6ERB5_9ACTN1.140e-643.18Uncharacterized protein n=3 Tax=root TaxID=1 RepID... [more]
UPI001438AB8D1.970e-640.40S-layer homology domain-containing protein n=1 Tax... [more]
A0A4Q9DX44_9BACL2.080e-638.30Uncharacterized protein n=2 Tax=Paenibacillus thal... [more]
A0A841SU32_9BACL2.520e-536.96Choice-of-anchor D domain-containing protein n=4 T... [more]
A0A3S1GQT5_9BACL3.320e-537.86Uncharacterized protein n=1 Tax=Cohnella sp. AR92 ... [more]
UPI001FD15F1D3.450e-536.96Ig-like domain-containing protein n=1 Tax=Agromyce... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig113contigH-canaliculatus_F_contig113:1112..1423 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score66.6
Seed ortholog evalue7.7e-09
Seed eggNOG ortholog1101188.KI912155_gene2584
KEGG rclassRC00799
KEGG koko:K15531,ko:K19668
KEGG ReactionR02886,R11308
KEGG Pathwayko00500,ko01100,ko02020,map00500,map01100,map02020
EggNOG free text desc.metallopeptidase activity
EggNOG OGsCOG0726@1,COG0726@2,COG3291@1,COG3291@2
EC3.2.1.156,3.2.1.91
COG Functional cat.S
CAZyGH6,GH8
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size312
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928812.0908887-CDS-H-canaliculatus_F_contig113:1111..14231622928812.0908887-CDS-H-canaliculatus_F_contig113:1111..1423Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig113 1112..1423 -
1696845573.8183854-CDS-H-canaliculatus_F_contig113:1111..14231696845573.8183854-CDS-H-canaliculatus_F_contig113:1111..1423Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig113 1112..1423 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig113.1166.1prot_H-canaliculatus_F_contig113.1166.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig113 1112..1423 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig113.1166.1

>prot_H-canaliculatus_F_contig113.1166.1 ID=prot_H-canaliculatus_F_contig113.1166.1|Name=mRNA_H-canaliculatus_F_contig113.1166.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=104bp
LSSVTIIAAQDVPEVPTGVYGTQSGVGMAIISWEAPEDNNSTITMYEVIF
SRTDLDEGGINATGSPAPTSVNVSNLITGSIYTFFVRAVNSVGSSDKSEG
SDEV
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mRNA from alignment at H-canaliculatus_F_contig113:1112..1423-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig113.1166.1 ID=mRNA_H-canaliculatus_F_contig113.1166.1|Name=mRNA_H-canaliculatus_F_contig113.1166.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=312bp|location=Sequence derived from alignment at H-canaliculatus_F_contig113:1112..1423- (Hapterophycus canaliculatus Oshoro5f female)
CTCTCGTCCGTGACAATAATTGCAGCACAAGATGTCCCGGAGGTGCCCAC TGGTGTTTATGGCACGCAGTCAGGGGTGGGAATGGCTATTATTTCCTGGG AGGCACCAGAGGACAACAACTCTACTATCACGATGTATGAGGTCATCTTT AGTCGAACAGATCTCGACGAAGGAGGTATAAACGCGACGGGCAGCCCAGC ACCTACATCTGTGAATGTGTCGAACCTGATCACGGGATCCATCTACACAT TCTTTGTTCGCGCTGTCAACTCTGTTGGTTCAAGCGACAAGAGTGAGGGA AGTGACGAGGTA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig113:1112..1423-

>mRNA_H-canaliculatus_F_contig113.1166.1 ID=mRNA_H-canaliculatus_F_contig113.1166.1|Name=mRNA_H-canaliculatus_F_contig113.1166.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=624bp|location=Sequence derived from alignment at H-canaliculatus_F_contig113:1112..1423- (Hapterophycus canaliculatus Oshoro5f female)
CTCTCGTCCGTGACAATAATTGCAGCACAAGATGTCCCGGAGGTGCCCAC
TGGTGTTTATGGCACGCAGTCAGGGGTGGGAATGGCTATTATTTCCTGGG
AGGCACCAGAGGACAACAACTCTACTATCACGATGTATGAGGTCATCTTT
AGTCGAACAGATCTCGACGAAGGAGGTATAAACGCGACGGGCAGCCCAGC
ACCTACATCTGTGAATGTGTCGAACCTGATCACGGGATCCATCTACACAT
TCTTTGTTCGCGCTGTCAACTCTGTTGGTTCAAGCGACAAGAGTGAGGGA
AGTGACGAGGTACTCTCGTCCGTGACAATAATTGCAGCACAAGATGTCCC
GGAGGTGCCCACTGGTGTTTATGGCACGCAGTCAGGGGTGGGAATGGCTA
TTATTTCCTGGGAGGCACCAGAGGACAACAACTCTACTATCACGATGTAT
GAGGTCATCTTTAGTCGAACAGATCTCGACGAAGGAGGTATAAACGCGAC
GGGCAGCCCAGCACCTACATCTGTGAATGTGTCGAACCTGATCACGGGAT
CCATCTACACATTCTTTGTTCGCGCTGTCAACTCTGTTGGTTCAAGCGAC
AAGAGTGAGGGAAGTGACGAGGTA
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