mRNA_H-canaliculatus_F_contig11071.976.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11071.976.1
Unique NamemRNA_H-canaliculatus_F_contig11071.976.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig11071.976.1 vs. uniprot
Match: A0A0A0RTZ6_SACJA (Phosphomannomutase n=2 Tax=Phaeophyceae TaxID=2870 RepID=A0A0A0RTZ6_SACJA)

HSP 1 Score: 69.3 bits (168), Expect = 3.520e-11
Identity = 30/36 (83.33%), Postives = 34/36 (94.44%), Query Frame = 3 
Query:  384 QGGNDYEIFESERTIGHTVTSPEDTMKQCKELFFKE 491
            +GGND EIFESERTIGHTVTSP DT++QCKELFFK+
Sbjct:  217 KGGNDNEIFESERTIGHTVTSPADTIQQCKELFFKD 252
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BLAST of mRNA_H-canaliculatus_F_contig11071.976.1 vs. uniprot
Match: A0A1J7HW20_LUPAN (Phosphomannomutase n=6 Tax=Lupinus TaxID=3869 RepID=A0A1J7HW20_LUPAN)

HSP 1 Score: 66.2 bits (160), Expect = 5.030e-11
Identity = 28/33 (84.85%), Postives = 32/33 (96.97%), Query Frame = 3 
Query:  384 QGGNDYEIFESERTIGHTVTSPEDTMKQCKELF 482
            +GGND+EI+ESERTIGHTVTSPEDT+KQCK LF
Sbjct:   86 KGGNDHEIYESERTIGHTVTSPEDTIKQCKALF 118
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BLAST of mRNA_H-canaliculatus_F_contig11071.976.1 vs. uniprot
Match: A0A8B8L6F6_ABRPR (Phosphomannomutase n=3 Tax=Fabaceae TaxID=3803 RepID=A0A8B8L6F6_ABRPR)

HSP 1 Score: 68.2 bits (165), Expect = 8.850e-11
Identity = 29/33 (87.88%), Postives = 32/33 (96.97%), Query Frame = 3 
Query:  384 QGGNDYEIFESERTIGHTVTSPEDTMKQCKELF 482
            +GGND+EI+ESERTIGHTVTSPEDTMKQCK LF
Sbjct:  212 KGGNDHEIYESERTIGHTVTSPEDTMKQCKSLF 244
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BLAST of mRNA_H-canaliculatus_F_contig11071.976.1 vs. uniprot
Match: PMM_SPIOL (Phosphomannomutase n=3 Tax=Chenopodioideae TaxID=1307796 RepID=PMM_SPIOL)

HSP 1 Score: 67.8 bits (164), Expect = 1.240e-10
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 3 
Query:  384 QGGNDYEIFESERTIGHTVTSPEDTMKQCKELF 482
            +GGNDYEIF SERT+GHTVTSPEDTMKQC E+F
Sbjct:  211 EGGNDYEIFASERTVGHTVTSPEDTMKQCTEIF 243
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BLAST of mRNA_H-canaliculatus_F_contig11071.976.1 vs. uniprot
Match: L1IZJ7_GUITC (Phosphomannomutase n=3 Tax=Geminigeraceae TaxID=589343 RepID=L1IZJ7_GUITC)

HSP 1 Score: 67.8 bits (164), Expect = 1.270e-10
Identity = 28/35 (80.00%), Postives = 32/35 (91.43%), Query Frame = 3 
Query:  387 GGNDYEIFESERTIGHTVTSPEDTMKQCKELFFKE 491
            GGNDYEIFE  RTIGHTVTSPE+TM+ C+ELFFK+
Sbjct:  216 GGNDYEIFEDSRTIGHTVTSPEETMRLCRELFFKD 250
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BLAST of mRNA_H-canaliculatus_F_contig11071.976.1 vs. uniprot
Match: A0A0J8B6D7_BETVV (Phosphomannomutase n=6 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=A0A0J8B6D7_BETVV)

HSP 1 Score: 67.4 bits (163), Expect = 1.660e-10
Identity = 28/36 (77.78%), Postives = 32/36 (88.89%), Query Frame = 3 
Query:  384 QGGNDYEIFESERTIGHTVTSPEDTMKQCKELFFKE 491
            +GGNDYEIF SE+TIGHTVTSPEDTMKQC E+F  +
Sbjct:  208 EGGNDYEIFASEKTIGHTVTSPEDTMKQCTEIFLNK 243
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BLAST of mRNA_H-canaliculatus_F_contig11071.976.1 vs. uniprot
Match: A0A6P4CLR7_ARADU (Phosphomannomutase n=9 Tax=Pentapetalae TaxID=1437201 RepID=A0A6P4CLR7_ARADU)

HSP 1 Score: 67.4 bits (163), Expect = 1.700e-10
Identity = 29/35 (82.86%), Postives = 32/35 (91.43%), Query Frame = 3 
Query:  384 QGGNDYEIFESERTIGHTVTSPEDTMKQCKELFFK 488
            +GGND+EI+ESERTIGHTVTSPEDTMKQC  LF K
Sbjct:  212 KGGNDHEIYESERTIGHTVTSPEDTMKQCTALFLK 246
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BLAST of mRNA_H-canaliculatus_F_contig11071.976.1 vs. uniprot
Match: A0A5B6UVU3_9ROSI (Phosphomannomutase n=1 Tax=Gossypium australe TaxID=47621 RepID=A0A5B6UVU3_9ROSI)

HSP 1 Score: 64.7 bits (156), Expect = 2.300e-10
Identity = 26/33 (78.79%), Postives = 32/33 (96.97%), Query Frame = 3 
Query:  384 QGGNDYEIFESERTIGHTVTSPEDTMKQCKELF 482
            +GGND+EI+ESERT+GHTVTSP+DT+KQCK LF
Sbjct:   92 KGGNDHEIYESERTVGHTVTSPDDTVKQCKALF 124
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BLAST of mRNA_H-canaliculatus_F_contig11071.976.1 vs. uniprot
Match: A0A2P6SGY2_ROSCH (Phosphomannomutase n=3 Tax=Rosoideae TaxID=171638 RepID=A0A2P6SGY2_ROSCH)

HSP 1 Score: 67.0 bits (162), Expect = 2.360e-10
Identity = 27/34 (79.41%), Postives = 33/34 (97.06%), Query Frame = 3 
Query:  384 QGGNDYEIFESERTIGHTVTSPEDTMKQCKELFF 485
            +GGND+EI+ESERT+GHTVTSPEDT++QCK LFF
Sbjct:  212 EGGNDHEIYESERTVGHTVTSPEDTVEQCKALFF 245
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BLAST of mRNA_H-canaliculatus_F_contig11071.976.1 vs. uniprot
Match: A9SYE1_PHYPA (Phosphomannomutase n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9SYE1_PHYPA)

HSP 1 Score: 67.0 bits (162), Expect = 2.460e-10
Identity = 28/33 (84.85%), Postives = 32/33 (96.97%), Query Frame = 3 
Query:  384 QGGNDYEIFESERTIGHTVTSPEDTMKQCKELF 482
            QGGND+EIFESE+TIGHTVTSPEDT++QC ELF
Sbjct:  212 QGGNDHEIFESEKTIGHTVTSPEDTIRQCSELF 244
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11071.976.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0A0RTZ6_SACJA3.520e-1183.33Phosphomannomutase n=2 Tax=Phaeophyceae TaxID=2870... [more]
A0A1J7HW20_LUPAN5.030e-1184.85Phosphomannomutase n=6 Tax=Lupinus TaxID=3869 RepI... [more]
A0A8B8L6F6_ABRPR8.850e-1187.88Phosphomannomutase n=3 Tax=Fabaceae TaxID=3803 Rep... [more]
PMM_SPIOL1.240e-1084.85Phosphomannomutase n=3 Tax=Chenopodioideae TaxID=1... [more]
L1IZJ7_GUITC1.270e-1080.00Phosphomannomutase n=3 Tax=Geminigeraceae TaxID=58... [more]
A0A0J8B6D7_BETVV1.660e-1077.78Phosphomannomutase n=6 Tax=Beta vulgaris subsp. vu... [more]
A0A6P4CLR7_ARADU1.700e-1082.86Phosphomannomutase n=9 Tax=Pentapetalae TaxID=1437... [more]
A0A5B6UVU3_9ROSI2.300e-1078.79Phosphomannomutase n=1 Tax=Gossypium australe TaxI... [more]
A0A2P6SGY2_ROSCH2.360e-1079.41Phosphomannomutase n=3 Tax=Rosoideae TaxID=171638 ... [more]
A9SYE1_PHYPA2.460e-1084.85Phosphomannomutase n=1 Tax=Physcomitrium patens Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11071contigH-canaliculatus_F_contig11071:104..597 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score71.2
Seed ortholog evalue1.4e-10
Seed eggNOG ortholog2880.D7FWW3
Preferred namePMM
KEGG rclassRC00408
KEGG koko:K07541,ko:K17497
KEGG ReactionR01818,R05919
KEGG Pathwayko00051,ko00520,ko00563,ko01100,ko01110,ko01130,map00051,map00520,map00563,map01100,map01110,map01130
KEGG ModuleM00114
GOsGO:0003674,GO:0003824,GO:0004615,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006013,GO:0006082,GO:0006139,GO:0006464,GO:0006486,GO:0006487,GO:0006605,GO:0006725,GO:0006732,GO:0006766,GO:0006767,GO:0006807,GO:0006810,GO:0006886,GO:0006950,GO:0006970,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009108,GO:0009110,GO:0009225,GO:0009226,GO:0009298,GO:0009628,GO:0009651,GO:0009987,GO:0010494,GO:0015031,GO:0015833,GO:0016051,GO:0016053,GO:0016853,GO:0016866,GO:0016868,GO:0018130,GO:0019318,GO:0019438,GO:0019538,GO:0019673,GO:0019752,GO:0019852,GO:0019853,GO:0031012,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0035770,GO:0036211,GO:0036464,GO:0042364,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043412,GO:0043413,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044283,GO:0044421,GO:0044424,GO:0044444,GO:0044464,GO:0045047,GO:0045184,GO:0046364,GO:0046394,GO:0046483,GO:0046907,GO:0050896,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0051641,GO:0051649,GO:0055086,GO:0062039,GO:0062040,GO:0070085,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0072594,GO:0072599,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.phosphomannomutase activity
EggNOG OGsCOG0561@1,KOG3189@2759
EC5.4.2.8
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size494
Cds size144
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928783.1987653-UTR-H-canaliculatus_F_contig11071:103..4531622928783.1987653-UTR-H-canaliculatus_F_contig11071:103..453Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11071 104..453 +
1696845562.457723-UTR-H-canaliculatus_F_contig11071:103..4531696845562.457723-UTR-H-canaliculatus_F_contig11071:103..453Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11071 104..453 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928783.21582-CDS-H-canaliculatus_F_contig11071:453..5971622928783.21582-CDS-H-canaliculatus_F_contig11071:453..597Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11071 454..597 +
1696845562.470028-CDS-H-canaliculatus_F_contig11071:453..5971696845562.470028-CDS-H-canaliculatus_F_contig11071:453..597Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11071 454..597 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11071.976.1prot_H-canaliculatus_F_contig11071.976.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11071 454..597 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11071.976.1

>prot_H-canaliculatus_F_contig11071.976.1 ID=prot_H-canaliculatus_F_contig11071.976.1|Name=mRNA_H-canaliculatus_F_contig11071.976.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=48bp
MDRSNVWSLRTQGGNDYEIFESERTIGHTVTSPEDTMKQCKELFFKE*
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mRNA from alignment at H-canaliculatus_F_contig11071:104..597+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11071.976.1 ID=mRNA_H-canaliculatus_F_contig11071.976.1|Name=mRNA_H-canaliculatus_F_contig11071.976.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=494bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11071:104..597+ (Hapterophycus canaliculatus Oshoro5f female)
GGGGGGGGGGGCAAGTTGTAGTGATGGGTGGTATTCCGTGTAAGGGGGCC
GAGCTTCGCGCTTTTTTGCATGGAACAGCTGCCGTTCGTGTCTGCTCTGC
ACTTGCATCACGGGAAGACTGAACGATTTGTTTTCAGCGAGTAGGGTAAA
TCGTTATTTTTATCCGGTCCTGTATTTCGGTTAGCGTGCGGCCGAATTAA
CTGCTGCTACTGGTGATAAAACAGCTAATTGGGCCATACATATTTCCGGG
CACAACAGTTTCCGCAGTGAGTCAAATAGTGTTCGTTTCGAGCTGCCGTT
TCTGACGCTGACGCTCTGCCGCTGCCACCGCCTCGCCCTTGTCTCCTCTC
ATGGACCGATCTAACGTCTGGTCCCTTCGTACGCAGGGCGGAAACGACTA
CGAGATCTTCGAGTCGGAGCGGACGATCGGACACACCGTCACCTCTCCCG
AGGACACAATGAAGCAGTGCAAGGAGCTCTTCTTCAAGGAATAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11071:104..597+

>mRNA_H-canaliculatus_F_contig11071.976.1 ID=mRNA_H-canaliculatus_F_contig11071.976.1|Name=mRNA_H-canaliculatus_F_contig11071.976.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=288bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11071:104..597+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGACCGATCTAACGTCTGGTCCCTTCGTACGCAGGGCGGAAACGACTA
CGAGATCTTCGAGTCGGAGCGGACGATCGGACACACCGTCACCTCTCCCG
AGGACACAATGAAGCAGTGCAAGGAGCTCTTCTTCAAGGAATAGATGGAC
CGATCTAACGTCTGGTCCCTTCGTACGCAGGGCGGAAACGACTACGAGAT
CTTCGAGTCGGAGCGGACGATCGGACACACCGTCACCTCTCCCGAGGACA
CAATGAAGCAGTGCAAGGAGCTCTTCTTCAAGGAATAG
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