mRNA_H-canaliculatus_F_contig1095.877.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1095.877.1 vs. uniprot
Match: D7FM12_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM12_ECTSI) HSP 1 Score: 511 bits (1315), Expect = 4.840e-162 Identity = 373/921 (40.50%), Postives = 441/921 (47.88%), Query Frame = 1
Query: 436 LLRRMFSKSEDSQSTAA-DGTGSDDFQFLAPSPAASSVNGRPTTLKGLALRSSAIRDAGIEEALELCGEDLEALNLADCRYLDASLTMVSMRQWCNRLASLDVSGTAFEEGGGEGGGENIPSPATPPTFPTCEEFTAVQVGVGIARPE---SMSVAEQKEADSVLDEKVHDCDLVMLLSGGLGRGLLSLRLRDRPFITDEGIGVIASCCTQLRELDVG-----TTRRLSQTGKITGQGLLYLSAAPCAQSLASLGLRNRHSVGHLDLEALGTQFPGLRKLDLADLVKVDDDVLKALVWTLSLTHIDLSR-------------------------------------------AHHVSVAGVVALALGSPELECISLHGIALTDGAVRALCGACPRLRHINVSMTCVTEQSLRLLAAKDSLRWANIRCCGDMKDSAATSEVLAAFRRRLAAPTHPRDRGTVLGMERPEPQQRARAPPPKRSLRPCLDGGGSTGRRSPPTGREAQASSNYHGQGAPVRTQSLAAKNLFREGSGTDGAGSGDTGDARDHCAALSRSDGSLNVDGGHVCSDGXXXXXXXXXRNQVAPLWGKDGGDGDEALAARAAGEKSSGGPNQWMSSTPFSIPLVSSVLSSGLGAWIKGEKEKGKGGQAALVRNGVKDPESAAGSPSPAAPVARSIPPAQPAASPNTESXXXXXXXXXXXXXXLXXXAPAHALASSRPPAADAXXXXXXXXXXXXXXXXXTSSSGDRPLP-----LLPAGVGDLSLGQSRRRIAAQRRTPGEGRNSSRAHGTMQEHPTGAEAGDEAWGPRGEDGTRG--RGQGVGGESNLEGGVVVPFDWDNIPRGSGVGDLGGWKGFRGLSGDLVKNVIRELHPYAEVAFRAKHDPEVGPPTPKISHGYLVHTSKWGQAWVELEVDDQGCVT 3021
+LR+ F + E+S S DG +DD A + GR L+GLA+ S+A++D I ALEL GE L+ L+LA CR LDASLTM ++R C RL +LD+SG EG G G PS A P F +VG+G++R S SVA D+ ++HD LV LL+G LG LLSL+LRDRPFITDEGIG IA CTQL+ELD+G T R+ +TG ITGQ L LSAAPCA L LGLRNRH VG++DL ALGT FP LR+LDLA LVKVDDDVL+AL TLSLTHID+SR AH VSV+GV ALA+GSPEL CISLHG AL DGAVRALC ACPRLRHIN+S+T VTE+SLRLLA KDSLRW N+RCC + + A T+++LA FR RL+ P HPRDRGTVLGMERPEPQ R RAP S RR P L A ++G S SSG G + + E+GKG + A +R H L + A A SS P P LLPAGVGDLSLG+ RRR EG +DG RG +G+G GE +E VVPFDWD +PRGSGVG LG WKGFRGLSGDLVKN+IRELHP+A+V FR + D GP + K +HGYLVHTSK+GQAWVE EVD QGCVT
Sbjct: 1 MLRKGFGELEESSSAGGGDGAETDDHS------GAPATRGRKCVLRGLAVCSAAVQDQAIARALELHGEGLQVLDLAGCRGLDASLTMEAVRSRCKRLVALDLSGGRSFEGRGRGEMGCAPSVAVPRCAVGGTSFER-EVGLGLSRRHPSCSPSVASLSIPDNT-HHRLHDYHLVSLLTG-LGGRLLSLQLRDRPFITDEGIGAIAVACTQLQELDIGRRTGDTGNRMMRTGSITGQALATLSAAPCAPLLVCLGLRNRHCVGNMDLRALGTHFPSLRRLDLAGLVKVDDDVLRALASTLSLTHIDISRFHGNIRDVLDRHHPESRCPRHAHTANPRLPTHGAPQPGLVRHRAHRVSVSGVSALAVGSPELACISLHGTALADGAVRALCDACPRLRHINLSLTRVTERSLRLLAMKDSLRWVNVRCCSGIGNDAVTAKILANFRSRLSPPKHPRDRGTVLGMERPEPQSRTRAP--------------SCSRRKP---------------------------------------------------------------------------------------------------LGANSSGR---------------------SEDSSGCGGY---QGERGKGRREAAIRQ----------------------------------------------------EGNGHELVAEEASAIQATAAEEEAVPSLAGEPAGASSRDHPPRPXXXXXLLPAGVGDLSLGRHRRRGXXXXXXXREGTXXXXXXXXXXX----------------QDGGRGFAKGRGXXGERRVEEEAVVPFDWDTVPRGSGVGVLGSWKGFRGLSGDLVKNIIRELHPHAQVEFRPESDFLFGPHSRKNTHGYLVHTSKFGQAWVEFEVDGQGCVT 707
BLAST of mRNA_H-canaliculatus_F_contig1095.877.1 vs. uniprot
Match: A0A6H5KWK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWK9_9PHAE) HSP 1 Score: 395 bits (1014), Expect = 7.190e-120 Identity = 287/645 (44.50%), Postives = 343/645 (53.18%), Query Frame = 1
Query: 1090 LSQTGKITGQGLLYLSAAPCAQSLASLGLRNRHSVGHLDLEALGTQFPGLRKLDLADLVKVDDDVLKALVWTLSLTHIDLSRAHHVSVAGVVALALGSPELECISLHGIALTDGAVRALCGACPRLRHINVSMTCVTEQSLRLLAAKDSLRWANIRCCGDMKDSAATSEVLAAFRRRLAAPTHPRDRGTVLGMERPEPQQRARAPPPKRSLRPCLDGGGSTGRRSPPTGREAQASSNYHGQGAPVRTQSLAAKNLFREGSGTDGAGSGDTGDARDHCAALSRSDGSLNVDGGHVCSDGXXXXXXXXXRNQVAPLWGKDGGDGDEALAARAAGEKSSGGPNQWMSSTPFSIPLVSSVLSSGLGAWIKGEKEKGKGGQAALVRNGVKDPESAAGSPSPAAPVAR---------SIPPAQP----AASPNTESXXXXXXXXXXXXXXLXXXAPAHALASSRPPAADAXXXXXXXXXXXXXXXXXTSSSGDRPLPLLPAGVGDLSLGQSRRRIAAQRRTPGEGRNSSRAHGTMQEHPTGAEAGDEAWGPRGEDGTRG--RGQGVGGESNLEGGVVVPFDWDNIPRGSGVGDLGGWKGFRGLSGDLVKNVIRELHPYAEVAFRAKHDPEVGPPTPKISHGYLVHTSKWGQ 2979
+ +TG ITGQ L LSAAPCA L LGLRN H VG++DL ALGT FP LR+LDLA LVKVDDDVL+AL TLSLTHID+SRAH VSV+GV ALA+GSPEL CISLHGIAL D AVRALC ACPRLRHIN+S+T VTE+SLRLLA KDSLRW N+RCC + + A T++VLA FR RL+ P HPRDRGTVLGMERPEPQ +R P P S R L S G G Q + GQ +R Q+ A + S D L+ +G SD + GK GG A A + GG + + TP + LVS G+GG+ A R + P SP+ P R ++ P P + SP + HALA A +SS D P PLLP GVGDLSLG+ RR GE R S + GT + G+ + G +DG RG +G+G GG+ +EG VVVPFDWD +PRGSGVG LG WKGFRGLSGDLVKNVIRELHP+A+V FR +D GP + +HGYLV S+ Q
Sbjct: 1 MMRTGSITGQALTTLSAAPCAPLLVCLGLRNLHCVGNMDLRALGTHFPSLRRLDLAGLVKVDDDVLRALSSTLSLTHIDISRAHRVSVSGVSALAVGSPELACISLHGIALVDEAVRALCDACPRLRHINLSLTRVTERSLRLLATKDSLRWVNVRCCSGIGNDAVTAKVLADFRSRLSPPKHPRDRGTVLGMERPEPQ--SRTPAPSCSRREPLGANSSGGSLDSGCGGY-QGPPDDVGQDLAIRAQAALALRVSSPSS--------------DRLHQLAPGNGGXXXXTKTASSDVEYCNGSIVRGDAPIDPNGKAGG----ATKGGRAPPSAEGGYTRRLD-TPGAA-LVSF----------------GEGGEIA-PRPSCRRPGGIRASPAKPTPAERLAGDSSQGTTLSPVAPLLLASTSPAPVDLDTGERGKGRRGAAIRQEGKGHALAEEASAAQSTAAEEEAVPSLAGEPAG--ASSRDHPPPLLPTGVGDLSLGRHRRH--------GESRGSPSSEGTKR--------GEGSTGTGFQDGGRGVAKGRGGGGDRRVEGEVVVPFDWDTVPRGSGVGVLGSWKGFRGLSGDLVKNVIRELHPHAQVEFRPGYDVVFGPHSRTNTHGYLVAKSRAAQ 587
BLAST of mRNA_H-canaliculatus_F_contig1095.877.1 vs. uniprot
Match: A0A6H5KXL9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXL9_9PHAE) HSP 1 Score: 134 bits (337), Expect = 6.910e-32 Identity = 98/222 (44.14%), Postives = 128/222 (57.66%), Query Frame = 1
Query: 436 LLRRMFSKSEDSQSTAADGTGSDDFQFLAPSPAASSVNGRPTTLKGLALRSSAIRDAGIEEALELCGEDLEALNLADCRYLDASLTMVSMRQWCNRLASLDVSGTAFEEGGGEGGGENIPSPATPPTFPTCEEFTAVQVGVGIARPE--------SMSVAEQKEADSVLDEKVHDCDLVMLLSGGLGRGLLSLRLRDRPFITDEGIGVIASCCTQLRELDVG 1077
+LRR F K E+S STA G G++ AS+ +G+ L+GLA+ S+A++D I ALE+ GE L+ L+LA CR LD SLTM ++R C RL +LD+SG EG G G PS ATP F +VG+G+ R S+S+ E ++ D LV LL+G LG LLSL+LRDRPFITD GI IA CTQL+ELD+G
Sbjct: 1 MLRRGFGKLEES-STADGGDGAETNDHSG----ASATSGKKCILRGLAVCSAAVQDQAIARALEMHGEGLQVLDLAGCRGLDTSLTMEAVRSRCKRLVALDLSGGRSFEGKGRGEIGCNPSVATPRCAVGGTSFEG-EVGLGLNRRHPSCSPSVASLSIPENNH------HRLRDYHLVSLLTG-LGGTLLSLQLRDRPFITDHGIWAIAVACTQLQELDIG 209 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1095.877.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1095.877.1 >prot_H-canaliculatus_F_contig1095.877.1 ID=prot_H-canaliculatus_F_contig1095.877.1|Name=mRNA_H-canaliculatus_F_contig1095.877.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=977bp MGDPALDDKFTDDQPQPAEASPLPEDVVEQILRYLSAVQALRCGRVSRYFback to top mRNA from alignment at H-canaliculatus_F_contig1095:18206..27762- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1095.877.1 ID=mRNA_H-canaliculatus_F_contig1095.877.1|Name=mRNA_H-canaliculatus_F_contig1095.877.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=9557bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1095:18206..27762- (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1095:18206..27762- >mRNA_H-canaliculatus_F_contig1095.877.1 ID=mRNA_H-canaliculatus_F_contig1095.877.1|Name=mRNA_H-canaliculatus_F_contig1095.877.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=5862bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1095:18206..27762- (Hapterophycus canaliculatus Oshoro5f female)back to top |