prot_H-canaliculatus_F_contig1095.877.1 (polypeptide) Hapterophycus canaliculatus Oshoro5f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-canaliculatus_F_contig1095.877.1
Unique Nameprot_H-canaliculatus_F_contig1095.877.1
Typepolypeptide
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Sequence length977
Homology
BLAST of mRNA_H-canaliculatus_F_contig1095.877.1 vs. uniprot
Match: D7FM12_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM12_ECTSI)

HSP 1 Score: 509 bits (1311), Expect = 5.950e-165
Identity = 373/921 (40.50%), Postives = 441/921 (47.88%), Query Frame = 0
Query:  115 LLRRMFSKSEDSQSTAA-DGTGSDDFQFLAPSPAASSVNGRPTTLKGLALRSSAIRDAGIEEALELCGEDLEALNLADCRYLDASLTMVSMRQWCNRLASLDVSGTAFEEGGGEGGGENIPSPATPPTFPTCEEFTAVQVGVGIARPE---SMSVAEQKEADSVLDEKVHDCDLVMLLSGGLGRGLLSLRLRDRPFITDEGIGVIASCCTQLRELDVG-----TTRRLSQTGKITGQGLLYLSAAPCAQSLASLGLRNRHSVGHLDLEALGTQFPGLRKLDLADLVKVDDDVLKALVWTLSLTHIDLSR-------------------------------------------AHHVSVAGVVALALGSPELECISLHGIALTDGAVRALCGACPRLRHINVSMTCVTEQSLRLLAAKDSLRWANIRCCGDMKDSAATSEVLAAFRRRLAAPTHPRDRGTVLGMERPEPQQRARAPPPKRSLRPCLDGGGSTGRRSPPTGREAQASSNYHGQGAPVRTQSLAAKNLFREGSGTDGAGSGDTGDARDHCAALSRSDGSLNVDGGHVCSDGXXXXXXXXXRNQVAPLWGKDGGDGDEALAARAAGEKSSGGPNQWMSSTPFSIPLVSSVLSSGLGAWIKGEKEKGKGGQAALVRNGVKDPESAAGSPSPAAPVARSIPPAQPAASPNTESXXXXXXXXXXXXXXLXXXAPAHALASSRPPAADAXXXXXXXXXXXXXXXXXTSSSGDRPLP-----LLPAGVGDLSLGQSRRRIAAQRRTPGEGRNSSRAHGTMQEHPTGAEAGDEAWGPRGEDGTRG--RGQGVGGESNLEGGVVVPFDWDNIPRGSGVGDLGGWKGFRGLSGDLVKNVIRELHPYAEVAFRAKHDPEVGPPTPKISHGYLVHTSKWGQAWVELEVDDQGCVT 976
            +LR+ F + E+S S    DG  +DD         A +  GR   L+GLA+ S+A++D  I  ALEL GE L+ L+LA CR LDASLTM ++R  C RL +LD+SG    EG G G     PS A P        F   +VG+G++R     S SVA     D+    ++HD  LV LL+G LG  LLSL+LRDRPFITDEGIG IA  CTQL+ELD+G     T  R+ +TG ITGQ L  LSAAPCA  L  LGLRNRH VG++DL ALGT FP LR+LDLA LVKVDDDVL+AL  TLSLTHID+SR                                           AH VSV+GV ALA+GSPEL CISLHG AL DGAVRALC ACPRLRHIN+S+T VTE+SLRLLA KDSLRW N+RCC  + + A T+++LA FR RL+ P HPRDRGTVLGMERPEPQ R RAP              S  RR P                                                                                                   L A ++G                      S  SSG G +   + E+GKG + A +R                                                         H L +    A  A                  SS    P P     LLPAGVGDLSLG+ RRR         EG                            +DG RG  +G+G  GE  +E   VVPFDWD +PRGSGVG LG WKGFRGLSGDLVKN+IRELHP+A+V FR + D   GP + K +HGYLVHTSK+GQAWVE EVD QGCVT
Sbjct:    1 MLRKGFGELEESSSAGGGDGAETDDHS------GAPATRGRKCVLRGLAVCSAAVQDQAIARALELHGEGLQVLDLAGCRGLDASLTMEAVRSRCKRLVALDLSGGRSFEGRGRGEMGCAPSVAVPRCAVGGTSFER-EVGLGLSRRHPSCSPSVASLSIPDNT-HHRLHDYHLVSLLTG-LGGRLLSLQLRDRPFITDEGIGAIAVACTQLQELDIGRRTGDTGNRMMRTGSITGQALATLSAAPCAPLLVCLGLRNRHCVGNMDLRALGTHFPSLRRLDLAGLVKVDDDVLRALASTLSLTHIDISRFHGNIRDVLDRHHPESRCPRHAHTANPRLPTHGAPQPGLVRHRAHRVSVSGVSALAVGSPELACISLHGTALADGAVRALCDACPRLRHINLSLTRVTERSLRLLAMKDSLRWVNVRCCSGIGNDAVTAKILANFRSRLSPPKHPRDRGTVLGMERPEPQSRTRAP--------------SCSRRKP---------------------------------------------------------------------------------------------------LGANSSGR---------------------SEDSSGCGGY---QGERGKGRREAAIRQ----------------------------------------------------EGNGHELVAEEASAIQATAAEEEAVPSLAGEPAGASSRDHPPRPXXXXXLLPAGVGDLSLGRHRRRGXXXXXXXREGTXXXXXXXXXXX----------------QDGGRGFAKGRGXXGERRVEEEAVVPFDWDTVPRGSGVGVLGSWKGFRGLSGDLVKNIIRELHPHAQVEFRPESDFLFGPHSRKNTHGYLVHTSKFGQAWVEFEVDGQGCVT 707          
BLAST of mRNA_H-canaliculatus_F_contig1095.877.1 vs. uniprot
Match: A0A6H5KWK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWK9_9PHAE)

HSP 1 Score: 395 bits (1014), Expect = 1.420e-122
Identity = 287/645 (44.50%), Postives = 343/645 (53.18%), Query Frame = 0
Query:  333 LSQTGKITGQGLLYLSAAPCAQSLASLGLRNRHSVGHLDLEALGTQFPGLRKLDLADLVKVDDDVLKALVWTLSLTHIDLSRAHHVSVAGVVALALGSPELECISLHGIALTDGAVRALCGACPRLRHINVSMTCVTEQSLRLLAAKDSLRWANIRCCGDMKDSAATSEVLAAFRRRLAAPTHPRDRGTVLGMERPEPQQRARAPPPKRSLRPCLDGGGSTGRRSPPTGREAQASSNYHGQGAPVRTQSLAAKNLFREGSGTDGAGSGDTGDARDHCAALSRSDGSLNVDGGHVCSDGXXXXXXXXXRNQVAPLWGKDGGDGDEALAARAAGEKSSGGPNQWMSSTPFSIPLVSSVLSSGLGAWIKGEKEKGKGGQAALVRNGVKDPESAAGSPSPAAPVAR---------SIPPAQP----AASPNTESXXXXXXXXXXXXXXLXXXAPAHALASSRPPAADAXXXXXXXXXXXXXXXXXTSSSGDRPLPLLPAGVGDLSLGQSRRRIAAQRRTPGEGRNSSRAHGTMQEHPTGAEAGDEAWGPRGEDGTRG--RGQGVGGESNLEGGVVVPFDWDNIPRGSGVGDLGGWKGFRGLSGDLVKNVIRELHPYAEVAFRAKHDPEVGPPTPKISHGYLVHTSKWGQ 962
            + +TG ITGQ L  LSAAPCA  L  LGLRN H VG++DL ALGT FP LR+LDLA LVKVDDDVL+AL  TLSLTHID+SRAH VSV+GV ALA+GSPEL CISLHGIAL D AVRALC ACPRLRHIN+S+T VTE+SLRLLA KDSLRW N+RCC  + + A T++VLA FR RL+ P HPRDRGTVLGMERPEPQ  +R P P  S R  L    S G      G   Q   +  GQ   +R Q+  A  +    S              D    L+  +G          SD           +      GK GG    A     A   + GG  + +  TP +  LVS                 G+GG+ A  R   + P     SP+   P  R         ++ P  P    + SP                  +      HALA     A                     +SS D P PLLP GVGDLSLG+ RR         GE R S  + GT +        G+ + G   +DG RG  +G+G GG+  +EG VVVPFDWD +PRGSGVG LG WKGFRGLSGDLVKNVIRELHP+A+V FR  +D   GP +   +HGYLV  S+  Q
Sbjct:    1 MMRTGSITGQALTTLSAAPCAPLLVCLGLRNLHCVGNMDLRALGTHFPSLRRLDLAGLVKVDDDVLRALSSTLSLTHIDISRAHRVSVSGVSALAVGSPELACISLHGIALVDEAVRALCDACPRLRHINLSLTRVTERSLRLLATKDSLRWVNVRCCSGIGNDAVTAKVLADFRSRLSPPKHPRDRGTVLGMERPEPQ--SRTPAPSCSRREPLGANSSGGSLDSGCGGY-QGPPDDVGQDLAIRAQAALALRVSSPSS--------------DRLHQLAPGNGGXXXXTKTASSDVEYCNGSIVRGDAPIDPNGKAGG----ATKGGRAPPSAEGGYTRRLD-TPGAA-LVSF----------------GEGGEIA-PRPSCRRPGGIRASPAKPTPAERLAGDSSQGTTLSPVAPLLLASTSPAPVDLDTGERGKGRRGAAIRQEGKGHALAEEASAAQSTAAEEEAVPSLAGEPAG--ASSRDHPPPLLPTGVGDLSLGRHRRH--------GESRGSPSSEGTKR--------GEGSTGTGFQDGGRGVAKGRGGGGDRRVEGEVVVPFDWDTVPRGSGVGVLGSWKGFRGLSGDLVKNVIRELHPHAQVEFRPGYDVVFGPHSRTNTHGYLVAKSRAAQ 587          
BLAST of mRNA_H-canaliculatus_F_contig1095.877.1 vs. uniprot
Match: A0A6H5KXL9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXL9_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 4.980e-32
Identity = 98/222 (44.14%), Postives = 128/222 (57.66%), Query Frame = 0
Query:  115 LLRRMFSKSEDSQSTAADGTGSDDFQFLAPSPAASSVNGRPTTLKGLALRSSAIRDAGIEEALELCGEDLEALNLADCRYLDASLTMVSMRQWCNRLASLDVSGTAFEEGGGEGGGENIPSPATPPTFPTCEEFTAVQVGVGIARPE--------SMSVAEQKEADSVLDEKVHDCDLVMLLSGGLGRGLLSLRLRDRPFITDEGIGVIASCCTQLRELDVG 328
            +LRR F K E+S STA  G G++          AS+ +G+   L+GLA+ S+A++D  I  ALE+ GE L+ L+LA CR LD SLTM ++R  C RL +LD+SG    EG G G     PS ATP        F   +VG+G+ R          S+S+ E          ++ D  LV LL+G LG  LLSL+LRDRPFITD GI  IA  CTQL+ELD+G
Sbjct:    1 MLRRGFGKLEES-STADGGDGAETNDHSG----ASATSGKKCILRGLAVCSAAVQDQAIARALEMHGEGLQVLDLAGCRGLDTSLTMEAVRSRCKRLVALDLSGGRSFEGKGRGEIGCNPSVATPRCAVGGTSFEG-EVGLGLNRRHPSCSPSVASLSIPENNH------HRLRDYHLVSLLTG-LGGTLLSLQLRDRPFITDHGIWAIAVACTQLQELDIG 209          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1095.877.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FM12_ECTSI5.950e-16540.50Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5KWK9_9PHAE1.420e-12244.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KXL9_9PHAE4.980e-3244.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006553Leucine-rich repeat, cysteine-containing subtypeSMARTSM00367LRR_CC_2coord: 404..429
e-value: 25.0
score: 11.5
coord: 455..479
e-value: 41.0
score: 9.8
coord: 319..350
e-value: 220.0
score: 4.0
coord: 293..318
e-value: 300.0
score: 3.1
IPR001810F-box domainPFAMPF00646F-boxcoord: 23..51
e-value: 3.6E-4
score: 20.3
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 278..511
e-value: 6.4E-30
score: 105.9
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 18..225
e-value: 1.5E-8
score: 36.0
NoneNo IPR availablePANTHERPTHR13382MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR Bcoord: 204..497
NoneNo IPR availablePANTHERPTHR13382:SF6SCF E3 UBIQUITIN LIGASE COMPLEX F-BOX PROTEIN GRR1coord: 204..497
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 156..491
IPR036047F-box-like domain superfamilySUPERFAMILY81383F-box domaincoord: 12..54

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1095contigH-canaliculatus_F_contig1095:19111..27669 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2022-09-29
Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-16
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1095.877.1mRNA_H-canaliculatus_F_contig1095.877.1Hapterophycus canaliculatus Oshoro5f femalemRNAH-canaliculatus_F_contig1095 18206..27762 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-canaliculatus_F_contig1095.877.1 ID=prot_H-canaliculatus_F_contig1095.877.1|Name=mRNA_H-canaliculatus_F_contig1095.877.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=977bp
MGDPALDDKFTDDQPQPAEASPLPEDVVEQILRYLSAVQALRCGRVSRYF
CRASIASLGDASCEHGIVGCGIHCCCCCWSNGGGSGSGSGGNVSRPYLDL
REGGDAVDCRALSSLLRRMFSKSEDSQSTAADGTGSDDFQFLAPSPAASS
VNGRPTTLKGLALRSSAIRDAGIEEALELCGEDLEALNLADCRYLDASLT
MVSMRQWCNRLASLDVSGTAFEEGGGEGGGENIPSPATPPTFPTCEEFTA
VQVGVGIARPESMSVAEQKEADSVLDEKVHDCDLVMLLSGGLGRGLLSLR
LRDRPFITDEGIGVIASCCTQLRELDVGTTRRLSQTGKITGQGLLYLSAA
PCAQSLASLGLRNRHSVGHLDLEALGTQFPGLRKLDLADLVKVDDDVLKA
LVWTLSLTHIDLSRAHHVSVAGVVALALGSPELECISLHGIALTDGAVRA
LCGACPRLRHINVSMTCVTEQSLRLLAAKDSLRWANIRCCGDMKDSAATS
EVLAAFRRRLAAPTHPRDRGTVLGMERPEPQQRARAPPPKRSLRPCLDGG
GSTGRRSPPTGREAQASSNYHGQGAPVRTQSLAAKNLFREGSGTDGAGSG
DTGDARDHCAALSRSDGSLNVDGGHVCSDGRSDGGSAMDRNQVAPLWGKD
GGDGDEALAARAAGEKSSGGPNQWMSSTPFSIPLVSSVLSSGLGAWIKGE
KEKGKGGQAALVRNGVKDPESAAGSPSPAAPVARSIPPAQPAASPNTESP
AAESPAGESPAPALAAPAPAHALASSRPPAADAPSAAQPASPPAVAAMPP
TSSSGDRPLPLLPAGVGDLSLGQSRRRIAAQRRTPGEGRNSSRAHGTMQE
HPTGAEAGDEAWGPRGEDGTRGRGQGVGGESNLEGGVVVPFDWDNIPRGS
GVGDLGGWKGFRGLSGDLVKNVIRELHPYAEVAFRAKHDPEVGPPTPKIS
HGYLVHTSKWGQAWVELEVDDQGCVT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036047F-box-like_dom_sf
IPR032675LRR_dom_sf
IPR001810F-box_dom
IPR006553Leu-rich_rpt_Cys-con_subtyp