mRNA_H-canaliculatus_F_contig1085.801.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1085.801.1
Unique NamemRNA_H-canaliculatus_F_contig1085.801.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1085.801.1 vs. uniprot
Match: D7FN76_ECTSI (GDT1 family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN76_ECTSI)

HSP 1 Score: 124 bits (310), Expect = 2.720e-33
Identity = 63/72 (87.50%), Postives = 68/72 (94.44%), Query Frame = 1 
Query:    1 FWKGFANSVAMIIATEIGDKTFFIAAIMAMSYSRLAVFGGAIGALAVMTVLSAALGFALPSFLPKTYTHYAS 216
            FW  FANSVAMIIATEIGDKTFFIAAIMAMS+ RLAVFGGA+GALAVMTVLSAALG+ALP+ LP+TYTHYAS
Sbjct:   48 FWTAFANSVAMIIATEIGDKTFFIAAIMAMSHPRLAVFGGAVGALAVMTVLSAALGYALPAILPRTYTHYAS 119
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BLAST of mRNA_H-canaliculatus_F_contig1085.801.1 vs. uniprot
Match: A0A6H5KTH0_9PHAE (GDT1 family protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTH0_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 4.280e-32
Identity = 63/72 (87.50%), Postives = 67/72 (93.06%), Query Frame = 1 
Query:    1 FWKGFANSVAMIIATEIGDKTFFIAAIMAMSYSRLAVFGGAIGALAVMTVLSAALGFALPSFLPKTYTHYAS 216
            FW  FANSVAMIIATEIGDKTFFIAAIMAMS+ RLAVFGGAIGALAVMTVLSAALG+ALP+ L +TYTHYAS
Sbjct:   48 FWTAFANSVAMIIATEIGDKTFFIAAIMAMSHPRLAVFGGAIGALAVMTVLSAALGYALPAVLSRTYTHYAS 119
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1085.801.1 vs. uniprot
Match: A0A836CAP1_9STRA (GDT1 family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAP1_9STRA)

HSP 1 Score: 110 bits (276), Expect = 8.840e-28
Identity = 56/71 (78.87%), Postives = 61/71 (85.92%), Query Frame = 1 
Query:    1 FWKGFANSVAMIIATEIGDKTFFIAAIMAMSYSRLAVFGGAIGALAVMTVLSAALGFALPSFLPKTYTHYA 213
            FW GF + V MIIATEIGDKTFFIAAIMAM YSR+ VF GAI ALA+MTVLSAALGFALP+ LP+ YTHYA
Sbjct:   92 FWGGFVSGVGMIIATEIGDKTFFIAAIMAMQYSRMLVFAGAITALAIMTVLSAALGFALPNILPREYTHYA 162
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1085.801.1 vs. uniprot
Match: A0A7S1CD49_9STRA (GDT1 family protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CD49_9STRA)

HSP 1 Score: 110 bits (274), Expect = 2.210e-27
Identity = 54/72 (75.00%), Postives = 61/72 (84.72%), Query Frame = 1 
Query:    1 FWKGFANSVAMIIATEIGDKTFFIAAIMAMSYSRLAVFGGAIGALAVMTVLSAALGFALPSFLPKTYTHYAS 216
            FW  F NSV MII TE+GDKTFFIAAI+AM Y R  VFGGAIGALA+MT LSAA+G+ALP+ LPKTYTHYA+
Sbjct:  129 FWASFGNSVIMIIVTELGDKTFFIAAILAMQYDRAPVFGGAIGALALMTALSAAIGWALPAILPKTYTHYAA 200
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BLAST of mRNA_H-canaliculatus_F_contig1085.801.1 vs. uniprot
Match: A0A7S3UU97_HETAK (GDT1 family protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UU97_HETAK)

HSP 1 Score: 103 bits (258), Expect = 1.770e-25
Identity = 51/72 (70.83%), Postives = 60/72 (83.33%), Query Frame = 1 
Query:    1 FWKGFANSVAMIIATEIGDKTFFIAAIMAMSYSRLAVFGGAIGALAVMTVLSAALGFALPSFLPKTYTHYAS 216
            F   F  SV MI+ATE+GDKTFFIAAI+AM +SR  +FGGAIGALA+MTVLS  +GFALPS +P+TYTHYAS
Sbjct:   64 FMPAFVKSVLMIVATELGDKTFFIAAILAMRHSRFLIFGGAIGALALMTVLSTLMGFALPSLIPRTYTHYAS 135
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1085.801.1 vs. uniprot
Match: A0A8J2SNL4_9STRA (GDT1 family protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SNL4_9STRA)

HSP 1 Score: 103 bits (258), Expect = 2.890e-25
Identity = 53/72 (73.61%), Postives = 61/72 (84.72%), Query Frame = 1 
Query:    1 FWKGFANSVAMIIATEIGDKTFFIAAIMAMSYSRLAVFGGAIGALAVMTVLSAALGFALPSFLPKTYTHYAS 216
            F + F NS+ MI ATE+GDKTFFIAAI+AM ++RL VF GA+GALAVMTVLSA LG ALPS LP+TYTHYAS
Sbjct:   82 FARAFVNSMGMIWATEVGDKTFFIAAILAMRHARLVVFAGALGALAVMTVLSALLGLALPSLLPRTYTHYAS 153
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BLAST of mRNA_H-canaliculatus_F_contig1085.801.1 vs. uniprot
Match: A0A7S0DLR4_9EUKA (GDT1 family protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DLR4_9EUKA)

HSP 1 Score: 104 bits (259), Expect = 3.940e-25
Identity = 50/72 (69.44%), Postives = 60/72 (83.33%), Query Frame = 1 
Query:    1 FWKGFANSVAMIIATEIGDKTFFIAAIMAMSYSRLAVFGGAIGALAVMTVLSAALGFALPSFLPKTYTHYAS 216
            FW  F  S+AMIIATE+GDKTFFIAAIMAM ++R  V+ GA+GALA+MTVLS  +GFALP+ LPK YTHYA+
Sbjct:  137 FWSAFVKSIAMIIATELGDKTFFIAAIMAMKHNRTMVYTGAVGALALMTVLSVGIGFALPNLLPKRYTHYAA 208
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1085.801.1 vs. uniprot
Match: F0Y333_AURAN (GDT1 family protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y333_AURAN)

HSP 1 Score: 100 bits (248), Expect = 1.600e-24
Identity = 50/72 (69.44%), Postives = 61/72 (84.72%), Query Frame = 1 
Query:    1 FWKGFANSVAMIIATEIGDKTFFIAAIMAMSYSRLAVFGGAIGALAVMTVLSAALGFALPSFLPKTYTHYAS 216
            F   F NS+ MI ATEIGDKTFFIAAI+AM ++RL +F GA+ ALAVMTVLSAA+G+ALP+ +P+TYTHYAS
Sbjct:    1 FAAAFVNSMGMIWATEIGDKTFFIAAILAMKHARLVIFLGAVSALAVMTVLSAAMGYALPALMPRTYTHYAS 72
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1085.801.1 vs. uniprot
Match: A0A7S2HJF0_9STRA (GDT1 family protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HJF0_9STRA)

HSP 1 Score: 102 bits (254), Expect = 1.680e-24
Identity = 51/72 (70.83%), Postives = 60/72 (83.33%), Query Frame = 1 
Query:    1 FWKGFANSVAMIIATEIGDKTFFIAAIMAMSYSRLAVFGGAIGALAVMTVLSAALGFALPSFLPKTYTHYAS 216
            FW  F NS  MII TEIGDKTFFIAA++AM +SR A+F GA+ ALA+MTVLSAA+GFALP+ LP+ YTHYAS
Sbjct:  116 FWAAFINSWLMIIVTEIGDKTFFIAAVLAMRHSRGAIFTGAVAALALMTVLSAAMGFALPNLLPRKYTHYAS 187
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1085.801.1 vs. uniprot
Match: A0A7S3JXQ5_9STRA (GDT1 family protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JXQ5_9STRA)

HSP 1 Score: 101 bits (252), Expect = 5.520e-24
Identity = 53/72 (73.61%), Postives = 61/72 (84.72%), Query Frame = 1 
Query:    1 FWKGFANSVAMIIATEIGDKTFFIAAIMAMSYSRLAVFGGAIGALAVMTVLSAALGFALPSFLPKTYTHYAS 216
            F K F NS+ MI ATE+GDKTFFIAAI+AM +SR  VF GA+ ALA+MTVLSAALG+ALPS LP+TYTHYAS
Sbjct:  123 FSKAFVNSLGMIWATELGDKTFFIAAILAMRHSRCIVFSGALLALALMTVLSAALGYALPSILPRTYTHYAS 194
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1085.801.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FN76_ECTSI2.720e-3387.50GDT1 family protein n=1 Tax=Ectocarpus siliculosus... [more]
A0A6H5KTH0_9PHAE4.280e-3287.50GDT1 family protein n=1 Tax=Ectocarpus sp. CCAP 13... [more]
A0A836CAP1_9STRA8.840e-2878.87GDT1 family protein n=1 Tax=Tribonema minus TaxID=... [more]
A0A7S1CD49_9STRA2.210e-2775.00GDT1 family protein n=1 Tax=Bicosoecida sp. CB-201... [more]
A0A7S3UU97_HETAK1.770e-2570.83GDT1 family protein n=1 Tax=Heterosigma akashiwo T... [more]
A0A8J2SNL4_9STRA2.890e-2573.61GDT1 family protein n=2 Tax=Pelagomonas calceolata... [more]
A0A7S0DLR4_9EUKA3.940e-2569.44GDT1 family protein n=1 Tax=Amorphochlora amoebifo... [more]
F0Y333_AURAN1.600e-2469.44GDT1 family protein (Fragment) n=1 Tax=Aureococcus... [more]
A0A7S2HJF0_9STRA1.680e-2470.83GDT1 family protein n=1 Tax=Dictyocha speculum Tax... [more]
A0A7S3JXQ5_9STRA5.520e-2473.61GDT1 family protein n=1 Tax=Aureoumbra lagunensis ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1085contigH-canaliculatus_F_contig1085:29684..30163 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.4
Seed ortholog evalue7.5e-20
Seed eggNOG ortholog2880.D7FN76
Preferred nameTMEM165
GOsGO:0000041,GO:0000139,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0003674,GO:0005215,GO:0005384,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005768,GO:0005769,GO:0005770,GO:0005773,GO:0005774,GO:0005794,GO:0005795,GO:0005797,GO:0005801,GO:0005802,GO:0006464,GO:0006486,GO:0006487,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006828,GO:0006873,GO:0006874,GO:0006875,GO:0006885,GO:0006996,GO:0007033,GO:0007040,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0010008,GO:0012505,GO:0015075,GO:0015077,GO:0015078,GO:0015085,GO:0015291,GO:0015297,GO:0015298,GO:0015299,GO:0015318,GO:0015368,GO:0015369,GO:0015491,GO:0015672,GO:0016020,GO:0016021,GO:0016043,GO:0019538,GO:0019725,GO:0022804,GO:0022857,GO:0022890,GO:0030001,GO:0030003,GO:0030004,GO:0030641,GO:0031090,GO:0031224,GO:0031410,GO:0031901,GO:0031902,GO:0031982,GO:0031984,GO:0031985,GO:0032468,GO:0032472,GO:0032588,GO:0034220,GO:0034645,GO:0035751,GO:0036211,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0046873,GO:0046915,GO:0048878,GO:0050801,GO:0051139,GO:0051179,GO:0051234,GO:0051453,GO:0055065,GO:0055067,GO:0055074,GO:0055080,GO:0055082,GO:0055085,GO:0061856,GO:0065007,GO:0065008,GO:0070085,GO:0070588,GO:0070838,GO:0071421,GO:0071704,GO:0071840,GO:0072503,GO:0072507,GO:0072511,GO:0080171,GO:0097708,GO:0098588,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:0098791,GO:0098805,GO:0098852,GO:0099516,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1902600
EggNOG free text desc.Golgi calcium ion transport
EggNOG OGsCOG2119@1,KOG2881@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionUncharacterised protein family UPF0016
Ec32 orthologEc-15_003250.1
Exons2
Model size216
Cds size186
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1085.801.1prot_H-canaliculatus_F_contig1085.801.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1085 29714..30163 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928752.9351795-UTR-H-canaliculatus_F_contig1085:29683..297131622928752.9351795-UTR-H-canaliculatus_F_contig1085:29683..29713Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1085 29684..29713 +
1696845551.1277308-UTR-H-canaliculatus_F_contig1085:29683..297131696845551.1277308-UTR-H-canaliculatus_F_contig1085:29683..29713Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1085 29684..29713 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928752.9556563-CDS-H-canaliculatus_F_contig1085:29713..297451622928752.9556563-CDS-H-canaliculatus_F_contig1085:29713..29745Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1085 29714..29745 +
1696845551.1384046-CDS-H-canaliculatus_F_contig1085:29713..297451696845551.1384046-CDS-H-canaliculatus_F_contig1085:29713..29745Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1085 29714..29745 +
1622928752.9714255-CDS-H-canaliculatus_F_contig1085:30009..301631622928752.9714255-CDS-H-canaliculatus_F_contig1085:30009..30163Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1085 30010..30163 +
1696845551.1475694-CDS-H-canaliculatus_F_contig1085:30009..301631696845551.1475694-CDS-H-canaliculatus_F_contig1085:30009..30163Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1085 30010..30163 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1085.801.1

>prot_H-canaliculatus_F_contig1085.801.1 ID=prot_H-canaliculatus_F_contig1085.801.1|Name=mRNA_H-canaliculatus_F_contig1085.801.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=62bp
MIIATEIGDKTFFIAAIMAMSYSRLAVFGGAIGALAVMTVLSAALGFALP
SFLPKTYTHYAS
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mRNA from alignment at H-canaliculatus_F_contig1085:29684..30163+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1085.801.1 ID=mRNA_H-canaliculatus_F_contig1085.801.1|Name=mRNA_H-canaliculatus_F_contig1085.801.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=480bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1085:29684..30163+ (Hapterophycus canaliculatus Oshoro5f female)
TTCTGGAAGGGTTTCGCCAACAGCGTGGCGATGATCATCGCCACGGAGAT
CGGGGATAAGACGTGAGCAGCCCCTGCCACGGAATCCTGCTCGAGTTGCC
TGTAGATCGGCCTTCGGTCGGCCGACGATCGCCTTGGTTGTTTTTTGGTG
TGCCCTTTGCACGGAAAGTACCGGACGCGTCATGTCCCGCCTGCCGACGT
GCCGCCTCGCGACCGCTTTGCCCCAGACCCTTTCTCTCCCGCTGCCTCGC
CGAGACTCACGCGCATAAGCTACCGCCGCCGCGTTTGCCCTTCCGCTTCC
GCTTTTGCCCTCCTCCCTCTGTCCAGGTTTTTTATCGCCGCAATCATGGC
CATGAGCTACTCGCGACTCGCAGTTTTTGGCGGGGCCATTGGGGCCCTGG
CCGTCATGACTGTGCTTTCCGCCGCGCTCGGCTTCGCGCTGCCGTCCTTC
CTGCCCAAGACCTACACGCACTACGCCAGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1085:29684..30163+

>mRNA_H-canaliculatus_F_contig1085.801.1 ID=mRNA_H-canaliculatus_F_contig1085.801.1|Name=mRNA_H-canaliculatus_F_contig1085.801.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=372bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1085:29684..30163+ (Hapterophycus canaliculatus Oshoro5f female)
ATGATCATCGCCACGGAGATCGGGGATAAGACATGATCATCGCCACGGAG
ATCGGGGATAAGACGTTTTTTATCGCCGCAATCATGGCCATGAGCTACTC
GCGACTCGCAGTTTTTGGCGGGGCCATTGGGGCCCTGGCCGTCATGACTG
TGCTTTCCGCCGCGCTCGGCTTCGCGCTGCCGTCCTTCCTGCCCAAGACC
TACACGCACTACGCCAGCGTTTTTTATCGCCGCAATCATGGCCATGAGCT
ACTCGCGACTCGCAGTTTTTGGCGGGGCCATTGGGGCCCTGGCCGTCATG
ACTGTGCTTTCCGCCGCGCTCGGCTTCGCGCTGCCGTCCTTCCTGCCCAA
GACCTACACGCACTACGCCAGC
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