mRNA_H-canaliculatus_F_contig1084.792.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1084.792.1
Unique NamemRNA_H-canaliculatus_F_contig1084.792.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1084.792.1 vs. uniprot
Match: D8LJM0_ECTSI (Serine/threonine-protein kinase CTR1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJM0_ECTSI)

HSP 1 Score: 294 bits (752), Expect = 1.500e-91
Identity = 145/192 (75.52%), Postives = 172/192 (89.58%), Query Frame = 1 
Query:    1 LKSRKDSRVFADKWGPGMLALGLFAAIVTVLVMQIVDYIKANDKPEVSVPGVSEAVTHAQNFFFDGVDYIPSETSRNAALVKMASELKSFSPDRAYEFSNLSDGRPTKRVRRKTEYIVASGSTSDIASLPHGEAVLVSAQEELYVYPGSDTGTFDLFMEFYNTASVDFVGPYATSTYSGNDETTVRLGIRCV 576
            LKSRKDSRVFADKWGPGMLALGLFAAIVTVLVMQ++DYI A D P VSV GVS+AV HAQ++ +DGV Y P+  SRNAALVK+ASEL SFSP +AYEFSNLS+GRPTKR+R++ EYIVASGSTSD+ SLPHGEAVLV+AQEE++++PG++TGTFD+ MEFYNTASVDFVGPYATS ++G++ETT+R G  CV
Sbjct:  167 LKSRKDSRVFADKWGPGMLALGLFAAIVTVLVMQVLDYIDATDTPSVSVAGVSDAVAHAQDYSYDGVVYTPTGISRNAALVKLASELNSFSPSKAYEFSNLSNGRPTKRLRKREEYIVASGSTSDLTSLPHGEAVLVTAQEEVFMFPGANTGTFDVAMEFYNTASVDFVGPYATSAFTGDEETTIR-GAMCV 357
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1084.792.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LJM0_ECTSI1.500e-9175.52Serine/threonine-protein kinase CTR1 n=1 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1084contigH-canaliculatus_F_contig1084:21507..24772 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons7
Model size783
Cds size783
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928751.77505-CDS-H-canaliculatus_F_contig1084:21506..216961622928751.77505-CDS-H-canaliculatus_F_contig1084:21506..21696Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1084 21507..21696 +
1696845550.5942423-CDS-H-canaliculatus_F_contig1084:21506..216961696845550.5942423-CDS-H-canaliculatus_F_contig1084:21506..21696Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1084 21507..21696 +
1622928751.8054662-CDS-H-canaliculatus_F_contig1084:22088..221471622928751.8054662-CDS-H-canaliculatus_F_contig1084:22088..22147Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1084 22089..22147 +
1696845550.6037445-CDS-H-canaliculatus_F_contig1084:22088..221471696845550.6037445-CDS-H-canaliculatus_F_contig1084:22088..22147Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1084 22089..22147 +
1622928751.818246-CDS-H-canaliculatus_F_contig1084:22800..229711622928751.818246-CDS-H-canaliculatus_F_contig1084:22800..22971Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1084 22801..22971 +
1696845550.6125774-CDS-H-canaliculatus_F_contig1084:22800..229711696845550.6125774-CDS-H-canaliculatus_F_contig1084:22800..22971Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1084 22801..22971 +
1622928751.8363993-CDS-H-canaliculatus_F_contig1084:23384..235221622928751.8363993-CDS-H-canaliculatus_F_contig1084:23384..23522Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1084 23385..23522 +
1696845550.6256528-CDS-H-canaliculatus_F_contig1084:23384..235221696845550.6256528-CDS-H-canaliculatus_F_contig1084:23384..23522Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1084 23385..23522 +
1622928751.8519304-CDS-H-canaliculatus_F_contig1084:23983..241151622928751.8519304-CDS-H-canaliculatus_F_contig1084:23983..24115Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1084 23984..24115 +
1696845550.6387496-CDS-H-canaliculatus_F_contig1084:23983..241151696845550.6387496-CDS-H-canaliculatus_F_contig1084:23983..24115Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1084 23984..24115 +
1622928751.9189565-CDS-H-canaliculatus_F_contig1084:24451..245171622928751.9189565-CDS-H-canaliculatus_F_contig1084:24451..24517Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1084 24452..24517 +
1696845550.651673-CDS-H-canaliculatus_F_contig1084:24451..245171696845550.651673-CDS-H-canaliculatus_F_contig1084:24451..24517Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1084 24452..24517 +
1622928751.9470546-CDS-H-canaliculatus_F_contig1084:24745..247721622928751.9470546-CDS-H-canaliculatus_F_contig1084:24745..24772Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1084 24746..24772 +
1696845550.66231-CDS-H-canaliculatus_F_contig1084:24745..247721696845550.66231-CDS-H-canaliculatus_F_contig1084:24745..24772Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1084 24746..24772 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1084.792.1prot_H-canaliculatus_F_contig1084.792.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1084 21507..24772 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1084.792.1

>prot_H-canaliculatus_F_contig1084.792.1 ID=prot_H-canaliculatus_F_contig1084.792.1|Name=mRNA_H-canaliculatus_F_contig1084.792.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=261bp
LKSRKDSRVFADKWGPGMLALGLFAAIVTVLVMQIVDYIKANDKPEVSVP
GVSEAVTHAQNFFFDGVDYIPSETSRNAALVKMASELKSFSPDRAYEFSN
LSDGRPTKRVRRKTEYIVASGSTSDIASLPHGEAVLVSAQEELYVYPGSD
TGTFDLFMEFYNTASVDFVGPYATSTYSGNDETTVRLGIRCVSADGDSFT
GTPGWLAAVEGASGTIPTPSSETTLAAYFQNVGTALSTHLGTSSYEFTSA
GTVYVWSAAFD
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mRNA from alignment at H-canaliculatus_F_contig1084:21507..24772+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1084.792.1 ID=mRNA_H-canaliculatus_F_contig1084.792.1|Name=mRNA_H-canaliculatus_F_contig1084.792.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3266bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1084:21507..24772+ (Hapterophycus canaliculatus Oshoro5f female)
CTGAAGTCGAGGAAGGACAGCAGGGTTTTCGCCGACAAGTGGGGGCCTGG
TATGCTCGCGCTCGGCCTCTTCGCCGCGATCGTGACCGTGCTGGTGATGC
AGATCGTCGACTACATCAAGGCCAACGACAAGCCGGAGGTGTCCGTACCC
GGGGTGTCGGAGGCCGTCACGCACGCGCAAAACTTTTTCTGTGAGTGCGG
TGGCTTGCTTTGATCGCACCGTCTGGCTCATCTTTCACCCCGTTGGTTTC
ATCTTGTGTATCTGTATAAACTCATTCACCAAATGCGCTTGAGTTTTCGA
AACGATTGTCGCTTTTTCTGTGTGGCGTTTTCTGGCTGGAGGAAACCCCG
CACGGTCGGTGGACAGAGTCAACACTGACGTTGAGCAAGGTTGGTAGGAT
TGTATTCTGCTCGTATCCTCTTTCTTTCTAAACATGCGTTCGTGCGTGAG
GCTGCTGTTGACCTCTCACGTGAGCTTCATCGGATGACGCCTTCGCCTGT
TGTTTCCTGGTCGACCCTAACATTTGACGACGCGCATGTTGTATGAACGC
CTCACGTTTGGTTCTTGTTCTGGAAAATGCAGTCGATGGCGTGGACTACA
TCCCCTCAGAGACGTCGCGCAACGCCGCCCTCGTCAAGATGGTAAGACGG
GGCAGCAACAAGGAAACCCTCCGCACATGTCTGCCGTCCTTCTTCTCTTT
TCCATTTGTTTGCCTGAACTTGTTTATTTGCACCTTAATCTCTCTTCTGG
TTGTTTTTGGCACATGGCAATGGAATAACGTTATTGCATGTACCATGCCT
TGGACTTAAATATTTGTGAGGATGGTGGCGTGAGAGTAAGGAGGACCCGC
CCGCTTTGTTGCGACCCTTCCACTTTCTCACAATTGCCGTGACTTCTCAC
TTCATCCCCAATATTCGTTCGTCGTTCATTTTCCCTTTTTGCATTTTCTA
TGAGTAAGAGTCAGTCTCGACGACTTTGGTAGCTTGTCGCTGCTGCTTGT
TTACCTACGCTCTCACAGTACTCCATTTGGACCCTCTGTGTGTCTCGTCC
TTGATAGTGGACAGCAACAAGGGGACCATACCCGACCAAAAGCGTTTGTA
GTTTTCTAATTTGGTTTTGCCGGGGTCTCGGCTCTAGTGTTGTCAGATTT
CTTGACGGTTATTTGTTTTCAAGCGCAACTATCATTTGTGGTCTTCCACA
ACACAACGGCAGGAGAACCGTGTCAAACGTCGCACACCCACACGCTCGCT
CCGAACTGTTCCGCCCGGCCGAATAAAATGCAACGGACATTCAGGCGTCG
GAGCTAAAAAGCTTCTCGCCGGACAGAGCCTACGAATTTTCCAATCTCAG
CGACGGACGGCCTACTAAGAGGGTGAGGAGGAAGACGGAGTACATCGTGG
CTTCGGGATCGACCTCCGACATCGCCAGCCTGCCCCACGGGGAAGCAGTG
CTCGTCTCTGCGCAGGCAAGTCCGAAAAAGCCAGCGTTAACGGATTCGGC
CCGAGAGCACTGTGCCTTGCTCGCTTCCTGTCCTGTGAACATCGGTGTAG
GGTTGGTCCGCAGCGTATGTAGCCGCAAACCACGTCGTATTCTGCTTCTT
GCGTGAGAGATTGTTCGCTTTTACTACTTTCGGTGTTGCCCCTCTGATCA
TCCTCGTCGGAGGTGTTGTTGGCTCCGCTACCGCTGTTGCTGCTGCCGTC
GCTCCTACTGCTGTTCGTTCATGACAGTTCTCTACGTTTGAGGGCATCTT
TCGACGACAAGTACACCTTCTCTGCTGGCACGCTCAAACCAACCGGACAC
GGCATCCTCATAGTCACCCCGACTGTTCCCATCAATCGCTTGCGCCTCGT
ATCTTCTCGTTGTCTTGGACCGAAGCAGGAGGAATTGTATGTGTACCCGG
GGTCCGACACGGGTACGTTTGACCTCTTCATGGAGTTCTACAACACCGCC
TCCGTGGACTTCGTCGGCCCTTACGCTACCTCCACGTATTCCGGCAACGA
CGAGACTACAGTTCGGGTGCGATTCCTGGCCACTTGTTTCTGGGAGGGTT
GCAGAACAGCGTTCATGTAGCGACTAATCCACCAGCGGTAGATATCTATG
GCGTGTTTATCGCACTCAAGATTTCTCCTCATCAACGATGAGGGCGTGTG
CGGGCACCAGTGGTATGAGAGCGGACCGATGGCTTGTCCAGAGAAAAACG
ACTATCGCGGTGCGCGAAGGAGTTTTGAGTTTCAGGATCCGGGAGGGCTA
AGGGTAACTGTCCCAGCCGTTTGGACGTTTCGCGAGAGAAGGCGACTTAG
TTGTTGACCCTCCCGTCGAGTATTTCCTGTAGATATCGCTACTCTTCCCT
CTCGATTTCCTCCCGCAGCTCCCCTTCCTTCTCCTCCTGAGCCCTCCCTC
TCCCCCTTTCTGTCCATCTCGCTCGCACTGTTTCCACATCTTGCGTCTTC
GTCTGCTTTTGTTTCCACCTTTTTCAGTTGGGCATTCGCTGCGTGTCGGC
GGACGGTGACAGTTTCACCGGCACTCCCGGCTGGCTGGCCGCGGTGGAGG
GGGCTTCTGGCACCATCCCCACCCCTTCCTCCGAAACCACCCTGGCCGCC
TACTTCCAGGTGAGAAATACTGGCGTTCTTGTTGCTCTTGTAGCTGTTGC
TAAAGCCCTCGCTGTCGCCGTTTCCTCGGCTCCGAGTCTTGCTATCTGCG
GACCTTGCCTTTTGCCGCGCGACTCCAGAACCAATGAGGTACGCATTTCC
GGGTCGAAGAGGATGACGCGTTTTTTCCCTATTCGTCCGTTTCAATCGCC
AGCGAAGGTTGTACGATGGGTTGGCCGCGCCGGCTTGCTTCACCTCATGG
TTATTGTGTTTCATGCGATAAGAAATGCCCATTCTCGCCACAACCCCCCT
TCCTCCGTATCGTTGTTTTGCTCTCTCGTGCGCATGATTTACTAGAATGT
TGGGACGGCGCTCAGCACCCACCTTGGCACCAGCAGCTACGAGTTCACGA
GCGCTGGAACGGTGAGGAACACCCGGAAGATGAAAGAGAGAGGGGCAGAT
GTAGGAGACGAGACGGAGGAGAACCAAGATCATGGCAGCTCGCGGATGCT
TCGCCTTTCCCTTCATCCTCTTGCAGACCGGCCATCAGCTGCACGCTCGC
GGTGTAAAAAACCTTGAAACCAAATGTCGACCCCGAACGGAGCGTTCATT
CCTCAGAAGTTACGACCACCACTCGCCCACTCTTTCCAGGTGTACGTGTG
GTCTGCTGCTTTCGAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1084:21507..24772+

>mRNA_H-canaliculatus_F_contig1084.792.1 ID=mRNA_H-canaliculatus_F_contig1084.792.1|Name=mRNA_H-canaliculatus_F_contig1084.792.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1566bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1084:21507..24772+ (Hapterophycus canaliculatus Oshoro5f female)
CTGAAGTCGAGGAAGGACAGCAGGGTTTTCGCCGACAAGTGGGGGCCTGG
TATGCTCGCGCTCGGCCTCTTCGCCGCGATCGTGACCGTGCTGGTGATGC
AGATCGTCGACTACATCAAGGCCAACGACAAGCCGGAGGTGTCCGTACCC
GGGGTGTCGGAGGCCGTCACGCACGCGCAAAACTTTTTCTCTGAAGTCGA
GGAAGGACAGCAGGGTTTTCGCCGACAAGTGGGGGCCTGGTATGCTCGCG
CTCGGCCTCTTCGCCGCGATCGTGACCGTGCTGGTGATGCAGATCGTCGA
CTACATCAAGGCCAACGACAAGCCGGAGGTGTCCGTACCCGGGGTGTCGG
AGGCCGTCACGCACGCGCAAAACTTTTTCTTCGATGGCGTGGACTACATC
CCCTCAGAGACGTCGCGCAACGCCGCCCTCGTCAAGATGTCGATGGCGTG
GACTACATCCCCTCAGAGACGTCGCGCAACGCCGCCCTCGTCAAGATGGC
GTCGGAGCTAAAAAGCTTCTCGCCGGACAGAGCCTACGAATTTTCCAATC
TCAGCGACGGACGGCCTACTAAGAGGGTGAGGAGGAAGACGGAGTACATC
GTGGCTTCGGGATCGACCTCCGACATCGCCAGCCTGCCCCACGGGGAAGC
AGTGCTCGTCTCTGCGCAGGCGTCGGAGCTAAAAAGCTTCTCGCCGGACA
GAGCCTACGAATTTTCCAATCTCAGCGACGGACGGCCTACTAAGAGGGTG
AGGAGGAAGACGGAGTACATCGTGGCTTCGGGATCGACCTCCGACATCGC
CAGCCTGCCCCACGGGGAAGCAGTGCTCGTCTCTGCGCAGGAGGAATTGT
ATGTGTACCCGGGGTCCGACACGGGTACGTTTGACCTCTTCATGGAGTTC
TACAACACCGCCTCCGTGGACTTCGTCGGCCCTTACGCTACCTCCACGTA
TTCCGGCAACGACGAGACTACAGTTCGGGAGGAATTGTATGTGTACCCGG
GGTCCGACACGGGTACGTTTGACCTCTTCATGGAGTTCTACAACACCGCC
TCCGTGGACTTCGTCGGCCCTTACGCTACCTCCACGTATTCCGGCAACGA
CGAGACTACAGTTCGGTTGGGCATTCGCTGCGTGTCGGCGGACGGTGACA
GTTTCACCGGCACTCCCGGCTGGCTGGCCGCGGTGGAGGGGGCTTCTGGC
ACCATCCCCACCCCTTCCTCCGAAACCACCCTGGCCGCCTACTTCCAGTT
GGGCATTCGCTGCGTGTCGGCGGACGGTGACAGTTTCACCGGCACTCCCG
GCTGGCTGGCCGCGGTGGAGGGGGCTTCTGGCACCATCCCCACCCCTTCC
TCCGAAACCACCCTGGCCGCCTACTTCCAGAATGTTGGGACGGCGCTCAG
CACCCACCTTGGCACCAGCAGCTACGAGTTCACGAGCGCTGGAACGAATG
TTGGGACGGCGCTCAGCACCCACCTTGGCACCAGCAGCTACGAGTTCACG
AGCGCTGGAACGGTGTACGTGTGGTCTGCTGCTTTCGACGTGTACGTGTG
GTCTGCTGCTTTCGAC
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