mRNA_H-canaliculatus_F_contig10834.787.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10834.787.1
Unique NamemRNA_H-canaliculatus_F_contig10834.787.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig10834.787.1 vs. uniprot
Match: D7FLN2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLN2_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 7.210e-18
Identity = 46/92 (50.00%), Postives = 60/92 (65.22%), Query Frame = 1
Query:    1 KAALYEKAASLVAADKAKPEAHSQFQVCTDCPADLLPFHVKAVPDLTCVTETRFAGDATLGEAWGGKHCPRWCHEEEISYVLYDFLDVRICS 276
            KAALYEKA    + +  +   +  F+VCTDCPA L+P HVK VP   C   +  AGDA +GEAWGG+ CP+WC +E +  VL +  DVR+CS
Sbjct:  368 KAALYEKATP--STNTHRGGGNEIFEVCTDCPASLIPHHVKPVPVPVCNATSVLAGDAAVGEAWGGRGCPQWCSKEPVDGVL-NLKDVRVCS 456          
BLAST of mRNA_H-canaliculatus_F_contig10834.787.1 vs. uniprot
Match: D7FXD9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXD9_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 3.050e-15
Identity = 44/98 (44.90%), Postives = 60/98 (61.22%), Query Frame = 1
Query:    1 KAALYEKAASLVAADKA-KPEAHSQFQVCTDCPADLLPFHVKAVPDLTCVTETRFAGDATLGEAWGGKHCPRWCHEEE-ISYVLYDF--LDVRICSLE 282
            KAAL+ KAA+    +K  + +    FQVC+DCP DL+PFHVK +PD  C T     GDA +GE W G+ CP WC ++  +S +      +DVR CSL+
Sbjct:  438 KAALFAKAAASTDVNKQERADVGKSFQVCSDCPRDLMPFHVKPIPDPICETAESLRGDAQVGEVWNGELCPDWCMKQAPVSQLATQSGPVDVRECSLK 535          
BLAST of mRNA_H-canaliculatus_F_contig10834.787.1 vs. uniprot
Match: A0A6H5K539_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K539_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 4.560e-12
Identity = 39/77 (50.65%), Postives = 45/77 (58.44%), Query Frame = 1
Query:    1 KAALYEKAA-SLVAADKAKPEAHSQFQVCTDCPADLLPFHVKAVPDLTCVTETRFAGDATLGEAWGGKHCPRWCHEE 228
            KA LY KAA S     K   E    FQVC+DCP+ LLPFHVKA+P+  C       GDA  GEAW G  CP WC ++
Sbjct:  412 KAKLYAKAAASTDEIRKMNAEFGKAFQVCSDCPSALLPFHVKAIPESVCEIVQSLPGDAKTGEAWPGSLCPDWCMKQ 488          
BLAST of mRNA_H-canaliculatus_F_contig10834.787.1 vs. uniprot
Match: D8LHZ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHZ4_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 2.900e-11
Identity = 37/77 (48.05%), Postives = 43/77 (55.84%), Query Frame = 1
Query:    1 KAALYEKAA-SLVAADKAKPEAHSQFQVCTDCPADLLPFHVKAVPDLTCVTETRFAGDATLGEAWGGKHCPRWCHEE 228
            KA LY KAA S     K   E    FQVC+DCP+ LLPFHVKA+P+  C       G A  GE W G  CP WC ++
Sbjct:  440 KAKLYAKAAASTDEIRKMSAEVGKSFQVCSDCPSALLPFHVKAIPESVCEIVESLPGHAKTGEVWAGSLCPDWCMKQ 516          
BLAST of mRNA_H-canaliculatus_F_contig10834.787.1 vs. uniprot
Match: D7FXE0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE0_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 7.270e-11
Identity = 38/98 (38.78%), Postives = 53/98 (54.08%), Query Frame = 1
Query:    1 KAALYEKAA-SLVAADKAKPEAHSQFQVCTDCPADLLPFHVKAVPDLTCVTETRFAGDATLGEAWGGKHCPRWCHEE---EISYVLYDFLDVRICSLE 282
            KA LY KAA S   +++ + +    FQVC+DCP  +LP HVK +P+  C       G+A  GE W G+ CP WC ++            +DVR CS+E
Sbjct:  451 KAELYAKAAASTGGSEQERADVGKSFQVCSDCPRQMLPVHVKPIPEPVCEIVESLPGNAETGEVWDGELCPDWCMKQAPVSQKETQSGPVDVRECSIE 548          
BLAST of mRNA_H-canaliculatus_F_contig10834.787.1 vs. uniprot
Match: A0A6H5K8P1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8P1_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 7.570e-11
Identity = 39/98 (39.80%), Postives = 53/98 (54.08%), Query Frame = 1
Query:    1 KAALYEKAA-SLVAADKAKPEAHSQFQVCTDCPADLLPFHVKAVPDLTCVTETRFAGDATLGEAWGGKHCPRWCHEE---EISYVLYDFLDVRICSLE 282
            KA L+ KAA S   +++   +    FQVC+DCP  LLP HVK +P+  C T     G+A  GE W G+ CP WC ++            +DVR CS+E
Sbjct:  528 KAELHAKAAASTEGSEQQSVDVGKSFQVCSDCPRQLLPAHVKPIPEPVCETVESLPGNAETGEVWDGELCPDWCMKQAPVSQKETQSGPVDVRECSME 625          
BLAST of mRNA_H-canaliculatus_F_contig10834.787.1 vs. uniprot
Match: D7G348_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G348_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 1.160e-10
Identity = 36/77 (46.75%), Postives = 41/77 (53.25%), Query Frame = 1
Query:    1 KAALYEKAA-SLVAADKAKPEAHSQFQVCTDCPADLLPFHVKAVPDLTCVTETRFAGDATLGEAWGGKHCPRWCHEE 228
            KA LY KAA S     K   E    FQVC+DCP  LLPFHVK +P+  C       G A  GE W G  CP WC ++
Sbjct:  320 KAKLYAKAAASTDEIRKISAEVGKSFQVCSDCPGSLLPFHVKGIPEPVCDIVESLPGQAKTGEVWSGDLCPDWCMKQ 396          
BLAST of mRNA_H-canaliculatus_F_contig10834.787.1 vs. uniprot
Match: A0A6H5KAH4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAH4_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 3.300e-10
Identity = 35/76 (46.05%), Postives = 43/76 (56.58%), Query Frame = 1
Query:    4 AALYEKAA-SLVAADKAKPEAHSQFQVCTDCPADLLPFHVKAVPDLTCVTETRFAGDATLGEAWGGKHCPRWCHEE 228
            A LY KAA S     K   E    FQVC++ P+ LLPFHV+A+P+  C       GDA  GEAW G  CP WC ++
Sbjct:   41 AKLYAKAAASTDEIRKMNAEFGKAFQVCSEFPSALLPFHVEAIPESVCEIVESLPGDAKTGEAWPGSLCPDWCMKQ 116          
BLAST of mRNA_H-canaliculatus_F_contig10834.787.1 vs. uniprot
Match: D8LJ62_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ62_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 3.460e-10
Identity = 31/70 (44.29%), Postives = 41/70 (58.57%), Query Frame = 1
Query:   73 FQVCTDCPADLLPFHVKAVPDLTCVTETRFAGDATLGEAWGGKHCPRWCHEEEISYVLYD---FLDVRIC 273
            F++CTDCPA L+P HVK  P L C T +   G+AT+G+AW  + CP WC   E           +DVR+C
Sbjct:  555 FELCTDCPATLIPLHVKPSPLLKCDTVSALPGNATVGKAWDDERCPDWCMAREPDRQASKGTGLVDVRVC 624          
BLAST of mRNA_H-canaliculatus_F_contig10834.787.1 vs. uniprot
Match: A0A2G8LPS5_STIJA (Uncharacterized protein n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8LPS5_STIJA)

HSP 1 Score: 57.0 bits (136), Expect = 5.000e-6
Identity = 26/51 (50.98%), Postives = 31/51 (60.78%), Query Frame = 1
Query:   70 QFQVCTDCPADLLPFHVKAVPDLTC-VTETRFAGDATLGEAWGGKHCPRWC 219
            Q +VC DCPA LLPFH+K +PDLTC V+E+         E W G  CP  C
Sbjct:  410 QLKVCQDCPASLLPFHIKPIPDLTCYVSESVRETSLVKQEVWDGTLCPAEC 460          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10834.787.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7FLN2_ECTSI7.210e-1850.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FXD9_ECTSI3.050e-1544.90Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5K539_9PHAE4.560e-1250.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHZ4_ECTSI2.900e-1148.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FXE0_ECTSI7.270e-1138.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K8P1_9PHAE7.570e-1139.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G348_ECTSI1.160e-1046.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KAH4_9PHAE3.300e-1046.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJ62_ECTSI3.460e-1044.29Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A2G8LPS5_STIJA5.000e-650.98Uncharacterized protein n=1 Tax=Stichopus japonicu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10834contigH-canaliculatus_F_contig10834:887..1747 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.4
Seed ortholog evalue3.3e-17
Seed eggNOG ortholog2880.D7FLN2
EggNOG OGs2E5RD@1,2SCI8@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size637
Cds size297
Stop1
Start0
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928750.5365744-UTR-H-canaliculatus_F_contig10834:886..12261622928750.5365744-UTR-H-canaliculatus_F_contig10834:886..1226Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10834 887..1226 -
1696845550.2519243-UTR-H-canaliculatus_F_contig10834:886..12261696845550.2519243-UTR-H-canaliculatus_F_contig10834:886..1226Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10834 887..1226 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928750.5575058-CDS-H-canaliculatus_F_contig10834:1226..14451622928750.5575058-CDS-H-canaliculatus_F_contig10834:1226..1445Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10834 1227..1445 -
1696845550.2666824-CDS-H-canaliculatus_F_contig10834:1226..14451696845550.2666824-CDS-H-canaliculatus_F_contig10834:1226..1445Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10834 1227..1445 -
1622928750.5756886-CDS-H-canaliculatus_F_contig10834:1669..17471622928750.5756886-CDS-H-canaliculatus_F_contig10834:1669..1747Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10834 1670..1747 -
1696845550.2785056-CDS-H-canaliculatus_F_contig10834:1669..17471696845550.2785056-CDS-H-canaliculatus_F_contig10834:1669..1747Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10834 1670..1747 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10834.787.1prot_H-canaliculatus_F_contig10834.787.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10834 1227..1747 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10834.787.1

>prot_H-canaliculatus_F_contig10834.787.1 ID=prot_H-canaliculatus_F_contig10834.787.1|Name=mRNA_H-canaliculatus_F_contig10834.787.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=99bp
KAALYEKAASLVAADKAKPEAHSQFQVCTDCPADLLPFHVKAVPDLTCVT
ETRFAGDATLGEAWGGKHCPRWCHEEEISYVLYDFLDVRICSLEDYRS*
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mRNA from alignment at H-canaliculatus_F_contig10834:887..1747-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10834.787.1 ID=mRNA_H-canaliculatus_F_contig10834.787.1|Name=mRNA_H-canaliculatus_F_contig10834.787.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=861bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10834:887..1747- (Hapterophycus canaliculatus Oshoro5f female)
AAGGCAGCTTTGTACGAGAAAGCGGCGAGCCTGGTCGCGGCTGATAAAGC GAAACCAGAAGCGCACTCGCAGTTTCAGGTGAGCCATCTAGCGCACTCCC GCCGCATGCCATGGGAACTGCTCCATAGATAGGCCGCAAGCTGAATAATA TGGGCTTTTTCCAACTCATTTGTTCCTTGAGGCTACAGTAGATCATAGAG CTAACGAAAAAACTCGTCGCCCAAAGACTACGAGATGTCACTCGCGATTC TAAACCCTTTCGCGGATATTCATTTCGTTGCTTCGACCACCACGTTCGGC AGGTTTGCACCGACTGTCCGGCGGACTTGCTTCCTTTTCATGTCAAGGCG GTGCCTGACTTGACGTGCGTGACGGAGACACGTTTTGCGGGCGATGCGAC ATTGGGCGAGGCATGGGGCGGCAAGCACTGCCCGCGGTGGTGCCACGAGG AGGAGATATCTTACGTATTATACGATTTCTTGGACGTTCGGATATGCTCC CTAGAAGATTACCGAAGTTGATTGTCCGTTGGGGGTAACTTCGGTGCCGT CTTAAGGCACCAAGCCTCTGCAGCTGTTTTGGTGTCGCTTGGTAGAAACG GGCTTTCTTTATGATGAGCGTAAAGTAATGGTCCCGGTATGATGCCGGTA TGATGAGCCAGTCGGTTGCACCGGCATTTAGAGGGTGCCGACATTTTTAC ACTCTTCGCCCTGCATCGTGCCGATGTCGGCATGGATTAGATAGTTTTAG CTCGGGTTTGAACAAACCCAAGTAAAGGCGATGCACGGACGCGAAAGTAT TGCAATATGAAAGTATTTAGCTTGTAATACAAACAGACAGAAAACAGCAA AGCTATGACAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10834:887..1747-

>mRNA_H-canaliculatus_F_contig10834.787.1 ID=mRNA_H-canaliculatus_F_contig10834.787.1|Name=mRNA_H-canaliculatus_F_contig10834.787.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=594bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10834:887..1747- (Hapterophycus canaliculatus Oshoro5f female)
AAGGCAGCTTTGTACGAGAAAGCGGCGAGCCTGGTCGCGGCTGATAAAGC
GAAACCAGAAGCGCACTCGCAGTTTCAGAAGGCAGCTTTGTACGAGAAAG
CGGCGAGCCTGGTCGCGGCTGATAAAGCGAAACCAGAAGCGCACTCGCAG
TTTCAGGTTTGCACCGACTGTCCGGCGGACTTGCTTCCTTTTCATGTCAA
GGCGGTGCCTGACTTGACGTGCGTGACGGAGACACGTTTTGCGGGCGATG
CGACATTGGGCGAGGCATGGGGCGGCAAGCACTGCCCGCGGTGGTGCCAC
GAGGAGGAGATATCTTACGTATTATACGATTTCTTGGACGTTCGGATATG
CTCCCTAGAAGATTACCGAAGTTGAGTTTGCACCGACTGTCCGGCGGACT
TGCTTCCTTTTCATGTCAAGGCGGTGCCTGACTTGACGTGCGTGACGGAG
ACACGTTTTGCGGGCGATGCGACATTGGGCGAGGCATGGGGCGGCAAGCA
CTGCCCGCGGTGGTGCCACGAGGAGGAGATATCTTACGTATTATACGATT
TCTTGGACGTTCGGATATGCTCCCTAGAAGATTACCGAAGTTGA
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