mRNA_H-canaliculatus_F_contig10698.666.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10698.666.1
Unique NamemRNA_H-canaliculatus_F_contig10698.666.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig10698.666.1 vs. uniprot
Match: D8LP49_ECTSI (EsV-1-210/211 paralog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP49_ECTSI)

HSP 1 Score: 353 bits (907), Expect = 1.870e-118
Identity = 182/273 (66.67%), Postives = 219/273 (80.22%), Query Frame = 1
Query:    1 MDLMVRMASSTIRVDKDTKTGSVIETIRLVLGGDSSAAKTCFRRLILAYPDLGSRCPQLRINGKGKETPVADAKTLIEIVWLLPGKKAREFRRQSSEEVCRLLGGDLGLVSEMEARHAALQSTEEGRATRDFLVHGREEGVGTCDGTPAGFKYLSEADGAQFAKQVIEQNLKLGEHQLQESKVALKRKRIEDLVQSYRELKGLGVHLGGRTLVELRDNVTILSRQDVIVKNAMAVAAPLTQDSRTPTHELDADHRGRETGIVILSNKIGIRVP 819
            MDL+  M  +TIR DK TK GSV++TIR+VL  DSS A T F RL+ A+P+LGSRC + ++NGKG ETPVADAKTLIEIVWLLPGKKA  FRRQSSE+VCRLLGGDL LVSE+EARHA LQSTE+GR T++FL+HGREE V T DG PAGFKYLSE D AQ AK++I+Q LK G+        ALKRKR++DLV SYR ++ +GV L GRTL+ELRD+VTILSRQ+ +  +A+AVA PL QDS T THEL +  RG+ETGIV++S+KIGIRVP
Sbjct:    1 MDLIESMDGATIRADKQTKKGSVMDTIRMVLRCDSSNANTAFGRLLQAHPELGSRCTRSKLNGKGNETPVADAKTLIEIVWLLPGKKAHSFRRQSSEKVCRLLGGDLSLVSEIEARHATLQSTEQGRETQEFLLHGREEAVETFDGMPAGFKYLSETDRAQVAKRMIDQQLKAGDQ-------ALKRKRVDDLVHSYRAIQDIGVRLDGRTLIELRDSVTILSRQNTVEDDAVAVATPLLQDSNTSTHELASAQRGKETGIVVVSSKIGIRVP 266          
BLAST of mRNA_H-canaliculatus_F_contig10698.666.1 vs. uniprot
Match: A0A6H5JW74_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW74_9PHAE)

HSP 1 Score: 378 bits (971), Expect = 3.480e-118
Identity = 198/273 (72.53%), Postives = 229/273 (83.88%), Query Frame = 1
Query:    1 MDLMVRMASSTIRVDKDTKTGSVIETIRLVLGGDSSAAKTCFRRLILAYPDLGSRCPQLRINGKGKETPVADAKTLIEIVWLLPGKKAREFRRQSSEEVCRLLGGDLGLVSEMEARHAALQSTEEGRATRDFLVHGREEGVGTCDGTPAGFKYLSEADGAQFAKQVIEQNLKLGEHQLQESKVALKRKRIEDLVQSYRELKGLGVHLGGRTLVELRDNVTILSRQDVIVKNAMAVAAPLTQDSRTPTHELDADHRGRETGIVILSNKIGIRVP 819
            MDL+  M  +TIRVDK+ + GSVI+TIR+VLGGDSSAA T   RLILA  +LG+RC QLRINGKGK TPVADAKTLIEIVWLLPGKKAREFRRQSSE+VCRLLGGDL LVSE+EARHA LQSTE+GRAT++FL+  REE V T DG PAGF+YL   D AQFAKQ++E NL++       SKVALKRKR++D+VQSYR L+ LGV L GRTL+ELRDNVTILSRQDV+V NA+A+AAPL  DS TPTHEL AD RG+ETGIV++S+KIGIRVP
Sbjct:  898 MDLIENMHGATIRVDKNEQVGSVIDTIRMVLGGDSSAANTSLNRLILANEELGTRCTQLRINGKGKFTPVADAKTLIEIVWLLPGKKAREFRRQSSEKVCRLLGGDLSLVSEIEARHATLQSTEQGRATQEFLLGEREEAVETFDGMPAGFRYLPVEDRAQFAKQMLELNLEM-------SKVALKRKRVDDMVQSYRALQDLGVLLDGRTLIELRDNVTILSRQDVMVNNAVAIAAPLLHDSTTPTHELGADQRGKETGIVVVSSKIGIRVP 1163          
BLAST of mRNA_H-canaliculatus_F_contig10698.666.1 vs. uniprot
Match: B5LWG1_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWG1_9PHYC)

HSP 1 Score: 229 bits (583), Expect = 2.830e-69
Identity = 132/287 (45.99%), Postives = 185/287 (64.46%), Query Frame = 1
Query:    1 MDLMVRMASS-TIRVDKDTKTGSVIETIRLVLGGDSSAAKTCFRRLILAYPDLGSRCPQLRINGKGKETPVADAKTLIEIVWLLPGKKAREFRRQSSEEVCRLLGGDLGLVSEMEARHAALQSTEEGRATRDFLVH-GREEGVGTC----------DGTPAGFKYLSEADGAQFAKQVIEQNLKLGEHQLQESKVALKRKRIEDLVQSYRELKGLGVHLGGRTLVELRDNVTILSRQDVIVKNAM--AVAAPLTQDSRTPTHELDADHRGRETGIVILSNKIGIRVP 819
            MD +V    + +IR D  TK GSVI+ IR VLG  SSAA T    L   + DLG+     +INGKGK TPVADAKTL+EI++LLPG+KA +FRR+S+E+VCRL+GGD+ LV E+E R  AL+ST EGRAT+ FL++ G  E   +           +G PAGF +L  +D  + AK+V++Q L   +          KR+R ED+V  Y+ L  +GV L  RT +E+RDNV++L+++D+ ++ +    + AP+  D  TPTH L A  RG ETGIV+++ K+G+RVP
Sbjct:    1 MDAIVGYTDNFSIRADATTKKGSVIDVIRSVLGCSSSAANTNLSNLKTRFSDLGNNIAHAQINGKGKSTPVADAKTLVEIIFLLPGQKACKFRRKSAEKVCRLMGGDMSLVVEIEQRCTALESTPEGRATQAFLLNPGSSENSSSAPCASAQLKKYEGMPAGFSFLDPSDQCKVAKEVVQQALDGRKXXXXXXXXXXKRQRCEDMVGRYKTLMDIGVKLDDRTKIEIRDNVSLLTKRDLALEGSQDTEICAPI--DPTTPTHTLCAGERGHETGIVVVAAKMGVRVP 285          
BLAST of mRNA_H-canaliculatus_F_contig10698.666.1 vs. uniprot
Match: B5LWM3_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWM3_9PHYC)

HSP 1 Score: 226 bits (577), Expect = 1.210e-68
Identity = 124/272 (45.59%), Postives = 180/272 (66.18%), Query Frame = 1
Query:   19 MASSTIRVDKDTKTGSVIETIRLVLGGDSSAAKTCFRRL----ILAYPDLGSRCPQLRINGKGKETPVADAKTLIEIVWLLPGKKAREFRRQSSEEVCRLLGGDLGLVSEMEARHAALQSTEEGRATRDFLV-HGREEGVGTCDGTPAGFKYLSEADGAQFAKQVIEQNLKLGEHQLQESKVALKRKRIEDLVQSYRELKGLGVHLGGRTLVELRDNVTILSRQDVIVKNAMAVAAPLTQDSRTPTHELDADHRGRETGIVILSNKIGIRVP 819
            + ++TIR+D  T+ GSVI+ IR+VL  D+S+A T FRRL    + +  + G+ C  LRINGKG+ TPVA+AKTL+EI++ LPGK AREFRR+S+ ++CRLLGGD  LV E+E R A L+ST +GR T+ FL+   R +      G P GF+YL E+     A +V+               +ALKR+RIED++ SY  L+ LGV L  RT+VE+RDNV++L+++ + ++        L  D +TPTH L  + RG E+GIV++++K+G+RVP
Sbjct:    8 VVNATIRIDNATQKGSVIDVIRMVLRCDASSANTAFRRLKDDMLKSRAEFGAACSHLRINGKGRLTPVANAKTLVEIIFSLPGKLAREFRRKSASQICRLLGGDPTLVFEIEQRRAELESTPKGRVTQAFLLGESRHDTDDDFTGMPVGFRYLEESQRRAVAGEVVA--------------LALKRQRIEDMIGSYASLRSLGVELDPRTMVEIRDNVSLLTKRKLSIEEREDSTTRLV-DPKTPTHVLGREERGNESGIVVVASKMGVRVP 264          
BLAST of mRNA_H-canaliculatus_F_contig10698.666.1 vs. uniprot
Match: UPI0000161E55 (EsV-1-210/211 paralog n=1 Tax=Ectocarpus siliculosus virus 1 TaxID=37665 RepID=UPI0000161E55)

HSP 1 Score: 192 bits (488), Expect = 1.250e-56
Identity = 106/208 (50.96%), Postives = 141/208 (67.79%), Query Frame = 1
Query:  319 LGLVSEMEARHAALQSTEEGRATRDFLVHGREE--GVGTCDGTPAGFKYLSEADGAQFAKQVIEQNLKLGEHQLQESKVALKRKRIEDLVQSYRELKGLGVHLGGRTLVELRDNVTILSRQDVIVKNAMAVAAPLTQDSRTPTHELDADHRGRETGIVILSNKIGIRVP*KNVWSCR*TDEKIVHHQVRPCSRLQSLHEETDAFYGTP 936
            + LVSE+EARH +LQSTEEGRAT+ FL+ GREE   + + +G P  FKY+   D    AK++IEQ       QLQES VALKR+R+++L+QSY+ L+ +GV+L GRTL+EL DNVTILSRQD++V +A+    PL QDS TPTHELDA  RGRETGIV++S KIG+RVP     +     +K+   + R  S  ++  +    F G P
Sbjct:    1 MSLVSEIEARHNSLQSTEEGRATQSFLLDGREEVEAIDSFEGMPPAFKYIDAKDRGDLAKRMIEQ-------QLQESTVALKRQRVDNLIQSYKSLRDIGVNLDGRTLIELCDNVTILSRQDLVVSDAVPTPTPLLQDSSTPTHELDAAQRGRETGIVVVSAKIGLRVPQHLCGTVGKLMKKLYIKKYRLSSNFKAFIKRETIFNGRP 201          
BLAST of mRNA_H-canaliculatus_F_contig10698.666.1 vs. uniprot
Match: B5LWF8_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWF8_9PHYC)

HSP 1 Score: 191 bits (484), Expect = 7.910e-56
Identity = 109/244 (44.67%), Postives = 157/244 (64.34%), Query Frame = 1
Query:    1 MDLMVR-MASSTIRVDKDTKTGSVIETIRLVLGGDSSAAKTCFRRLILAYPDLGSRCPQLRINGKGKETPVADAKTLIEIVWLLPGKKAREFRRQSSEEVCRLLGGDLGLVSEMEARHAALQSTEEGRATRDFLV-----------HGREEGVGTCDGTPAGFKYLSEADGAQFAKQVIEQNLKLGEHQLQESKVALKRKRIEDLVQSYRELKGLGVHLGGRTLVELRDNVTILSRQDVIVKNA 696
            MD++VR M SS+IRVDK +K GSVI+T+++VLG  SS+  T  RRL   +PDL     +LRINGKG  TPVADAK L+++V LLPG+KA EFRR+S++ VCRLLGGD+ LV E+E R A LQ + EGR  +D L+                 +   +G PAGF++L  +D  + AK+V++Q L          K ALKR+R ED+V   + L  +GV L  +T  ++RDN+++L++ D+ ++ +
Sbjct:    1 MDVIVRNMESSSIRVDKASKKGSVIDTVKMVLGCTSSSGNTNLRRLTTRFPDLCVDITRLRINGKGMATPVADAKLLVQVVLLLPGQKAIEFRRKSADVVCRLLGGDMSLVKEIEQRCATLQRSPEGRVIQDILLGDGDADRSVVTSSTSSQIDKYEGMPAGFRFLDASDQHRVAKEVVKQALDC-------KKQALKRRRCEDMVDQCKSLSDIGVDLDNQTKKDIRDNLSLLTKGDLALEGS 237          
BLAST of mRNA_H-canaliculatus_F_contig10698.666.1 vs. uniprot
Match: B5LWM4_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWM4_9PHYC)

HSP 1 Score: 179 bits (454), Expect = 1.030e-49
Identity = 120/287 (41.81%), Postives = 165/287 (57.49%), Query Frame = 1
Query:    1 MDLMVRMASSTIRVDKDTKTGSVIETIRLVLGGDSSAAKTCFRRLILAYPDLGSRCPQLRINGKGKETPVADAKTLIEIVWLLPGKKAREFRRQSSEEVCRLLGGDLGLVSEMEARHAALQSTEEGRATRDFLVHGREEGVGTCDGT--------PAGFKYLSEADGAQFAKQVIEQNLKLGEHQLQESKVALKRKRIEDLVQ-SYRELKGLG--VHLGGRTLVELRDNVTILSRQDVIVKNAMAVAAPLTQDSRT----PTHELDADHRGRETGIVILSNKIGIRV 816
            MDL+  M  STIRVDK+TK GSVI+TIR+VL  DSS A T   RL+L++P LG +  QL++NG+GK TPVADAKTLIEIVWLLPG++A  FR Q   ++CRLLGGD  LVSE+EARHA L  TEEGRAT++F ++     +   D          P+ FK  +  +   FA  ++ + +   E ++ +   A    ++E + Q + R++   G  V    R  +   + +T     D +V +A+A     T DS T     T E     RG ET I   + K+GI V
Sbjct:   19 MDLIESMDGSTIRVDKNTKLGSVIDTIRMVLECDSSNANTSLGRLVLSHPGLGEKYTQLKVNGRGKPTPVADAKTLIEIVWLLPGRRAHAFRCQRVGKICRLLGGDTSLVSEIEARHATLTGTEEGRATQEFFLNDNHVTIDQPDQVKELRSGEEPSWFKNATAEEKRAFASTMVNKAIVSEEVEMYDFCKA----KLESVGQFTTRDMIEFGDRVRDAQRRALRAGNMMTSTPVDDTVVISAVARPVDDTIDSATGLPLATPECSESVRGVETSICNEAAKLGICV 301          
BLAST of mRNA_H-canaliculatus_F_contig10698.666.1 vs. uniprot
Match: Q6XM54_9PHYC (FirrV-1-A33 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM54_9PHYC)

HSP 1 Score: 175 bits (444), Expect = 1.740e-47
Identity = 107/282 (37.94%), Postives = 162/282 (57.45%), Query Frame = 1
Query:   34 IRVDKDTKTGSVIETIRLV----------------LGGDSSAAKTCFRRLILAYP-DLGSRCPQLRINGKGKETPVADAKTLIEIVWLLPGKKAREFRRQSSEEVCRLLGGDLGLVSEMEARHAALQSTEEGRATRDFLVHGREEGVGTCDGTPAGFKYLSEADGAQFAKQVIEQNLKLGEHQLQESKVALKRKRIEDLVQSYRELKGLGVHLGGRTLVELRDNVTILSRQDVIVKNAMAVAAP---LTQDSRTPTHELDADHRGRETGIVILSNKIGIRVP 819
            IRVD++++ GSVI+ I+L+                +  D       F+      P  L  R  +++ING+G+ TPVADAKTLI I+WLLPG+    FR QS+E + R+LGGDL L  E++ + A LQ T EGRA +DF+    ++           F++L  +   + A+Q   + LK  + + Q  +  LK+K I D++  Y+ LK + V +  RT VE+RD V+IL+RQ   ++   + A+P   L +D  TPTH LDA+ RG+ET IV++S K+ +RVP
Sbjct:  122 IRVDEESRMGSVIDVIKLICPEKSEFHAYKTLSNLIDDDDKCIGNKFKSDDSTIPLRLSERVKKIQINGRGRVTPVADAKTLIYIIWLLPGRAVAHFRAQSAEIIARVLGGDLRLAQEIQQQCAKLQETPEGRAFQDFMAPDAKKQKMDM------FEFLGPSKRVEIAEQFYAEKLKAIQQERQAKEQELKKKSITDIIDVYQSLKNIDVEIDDRTKVEIRDKVSILTRQ---MEGQGSHASPPLLLCEDPSTPTHVLDAERRGQETNIVVVSAKMNVRVP 394          
BLAST of mRNA_H-canaliculatus_F_contig10698.666.1 vs. uniprot
Match: A0A835Z3L4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3L4_9STRA)

HSP 1 Score: 167 bits (422), Expect = 1.360e-45
Identity = 106/270 (39.26%), Postives = 151/270 (55.93%), Query Frame = 1
Query:   25 SSTIRVDKDTKTGSVIETIRLVLGGDSSAAKTCFRRLILAY-PDLGSRCPQLRINGKGKETPVADAKTLIEIVWLLPGKKAREFRRQSSEEVCRLLGGDLGLVSEMEARHAALQSTEEGRATRDFLVHGREEGVG--TCDGTPAGFKYLSEADGAQFAKQVIEQNLKLGEHQLQESKVALKRKRIEDLVQSYRELKGLGVHLGGRTLVELRDNV--TILSRQDVIVKNAMAVAAPLTQDSRTPTHELDADHRGRETGIVILSNKIGIRVP 819
            ++ IRVD  T  GSVI+ I++V   ++S A T  +RL+     DLG+RC QLRIN KG+ TP ADAKTL+EIVW LPGK AREFRRQS+  VCR+LGGDL +V E+EARH ALQ TE GRA + FL+   E  VG     G P      +E   + + +  + +          E+ +A K+ R +  V+ Y  L+ +G     R  +   D V   +       V  A A+AA    D   PT + D  +RG E  +  +++++ +++P
Sbjct:    7 TAAIRVDTATNKGSVIDVIKIVQSCNASDASTYCKRLLDDIGTDLGTRCVQLRINSKGRLTPCADAKTLVEIVWSLPGKAAREFRRQSAANVCRVLGGDLSIVQEVEARHHALQQTEGGRAAQKFLLEDSESSVGGEMISGLPLELALANETQKSAYFEARMRE----------EAAIATKKARAQFAVEGYELLRSMGA-ADHRDCITFSDAVRRAVTDGGGAAVVEARALAA---DDPTIPTPQCDPFYRGEEISMHTVAHEMRVKIP 262          
BLAST of mRNA_H-canaliculatus_F_contig10698.666.1 vs. uniprot
Match: A0A835YWG0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWG0_9STRA)

HSP 1 Score: 161 bits (407), Expect = 2.590e-43
Identity = 111/270 (41.11%), Postives = 150/270 (55.56%), Query Frame = 1
Query:   25 SSTIRVDKDTKTGSVIETIRLVLGGDSSAAKT-CFRRLILAYPDLGSRCPQLRINGKGKETPVADAKTLIEIVWLLPGKKAREFRRQSSEEVCRLLGGDLGLVSEMEARHAALQSTEEGRATRDFLVHGREEGVGTCDGTPAGFKYLSEADGAQFAKQVIEQNLKLGEHQLQESK----VALKRKRIEDLVQSYRELKGLGVHLGGRTLVELRDNVTILSRQDVIVKNAMAVAAPLTQDSRT-PTHELDADHRGRETGIVILSNKIGIRV 816
            ++ IRVD  T  GSVI+ I++V   ++S A T C R L      +G+RC QLRINGKGK T  ADAKTL+EIVW LPGK AREFRR S++ VCR+LGGDL +V E+EARH ALQST  GRA +DFL+     G       PA  + L+   G     +V+ +N K  E  L   +    +A K+   E  V SY  L+ +G     R  +   D V  +  +      A+  A  +  D  T PT + DA +RG E  +  +S+K  +R+
Sbjct:    7 TAAIRVDTATNKGSVIDVIKIVQSCNASDASTYCKRLLDDVGTHIGTRCTQLRINGKGKLTFCADAKTLVEIVWSLPGKAAREFRRTSAKTVCRVLGGDLSIVREVEARHHALQSTGGGRAAQDFLLGDESSG----SEAPAEERTLARTIG-----EVMRRNNKQAELDLSRMRDNASIATKKACAEFAVDSYEMLRSMGA-ADDRDRITFSDAVRRIVAEGGGAAGAIVEAGAVPADDPTVPTSDCDAYYRGEEISMHSVSSKYSLRI 266          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10698.666.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LP49_ECTSI1.870e-11866.67EsV-1-210/211 paralog n=1 Tax=Ectocarpus siliculos... [more]
A0A6H5JW74_9PHAE3.480e-11872.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
B5LWG1_9PHYC2.830e-6945.99Uncharacterized protein n=1 Tax=Feldmannia species... [more]
B5LWM3_9PHYC1.210e-6845.59Uncharacterized protein n=1 Tax=Feldmannia species... [more]
UPI0000161E551.250e-5650.96EsV-1-210/211 paralog n=1 Tax=Ectocarpus siliculos... [more]
B5LWF8_9PHYC7.910e-5644.67Uncharacterized protein n=1 Tax=Feldmannia species... [more]
B5LWM4_9PHYC1.030e-4941.81Uncharacterized protein n=1 Tax=Feldmannia species... [more]
Q6XM54_9PHYC1.740e-4737.94FirrV-1-A33 n=1 Tax=Feldmannia irregularis virus a... [more]
A0A835Z3L4_9STRA1.360e-4539.26Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YWG0_9STRA2.590e-4341.11Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10698contigH-canaliculatus_F_contig10698:1270..2272 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score354.8
Seed ortholog evalue3.7e-95
Seed eggNOG ortholog2880.D8LP49
EggNOG OGs2EUDG@1,2SWJG@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size1003
Cds size822
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928730.7356234-UTR-H-canaliculatus_F_contig10698:1269..14501622928730.7356234-UTR-H-canaliculatus_F_contig10698:1269..1450Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10698 1270..1450 -
1696845541.986932-UTR-H-canaliculatus_F_contig10698:1269..14501696845541.986932-UTR-H-canaliculatus_F_contig10698:1269..1450Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10698 1270..1450 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928730.7563047-CDS-H-canaliculatus_F_contig10698:1450..22721622928730.7563047-CDS-H-canaliculatus_F_contig10698:1450..2272Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10698 1451..2272 -
1696845541.998939-CDS-H-canaliculatus_F_contig10698:1450..22721696845541.998939-CDS-H-canaliculatus_F_contig10698:1450..2272Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10698 1451..2272 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10698.666.1prot_H-canaliculatus_F_contig10698.666.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10698 1451..2272 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10698.666.1

>prot_H-canaliculatus_F_contig10698.666.1 ID=prot_H-canaliculatus_F_contig10698.666.1|Name=mRNA_H-canaliculatus_F_contig10698.666.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=274bp
MDLMVRMASSTIRVDKDTKTGSVIETIRLVLGGDSSAAKTCFRRLILAYP
DLGSRCPQLRINGKGKETPVADAKTLIEIVWLLPGKKAREFRRQSSEEVC
RLLGGDLGLVSEMEARHAALQSTEEGRATRDFLVHGREEGVGTCDGTPAG
FKYLSEADGAQFAKQVIEQNLKLGEHQLQESKVALKRKRIEDLVQSYREL
KGLGVHLGGRTLVELRDNVTILSRQDVIVKNAMAVAAPLTQDSRTPTHEL
DADHRGRETGIVILSNKIGIRVP*
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mRNA from alignment at H-canaliculatus_F_contig10698:1270..2272-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10698.666.1 ID=mRNA_H-canaliculatus_F_contig10698.666.1|Name=mRNA_H-canaliculatus_F_contig10698.666.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1003bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10698:1270..2272- (Hapterophycus canaliculatus Oshoro5f female)
ATGGACCTCATGGTTAGAATGGCCAGCTCGACGATCCGCGTAGACAAAGA CACAAAGACTGGAAGCGTGATAGAAACAATCCGACTGGTGCTTGGAGGCG ACTCGAGTGCGGCGAAAACATGCTTCAGGCGGCTTATTCTGGCGTACCCC GACTTGGGGTCTCGGTGCCCTCAACTTCGCATCAATGGAAAGGGGAAGGA AACACCGGTCGCCGATGCGAAAACGCTCATAGAAATCGTATGGCTCCTCC CTGGCAAAAAAGCTCGCGAGTTCCGTCGCCAGTCATCCGAAGAGGTGTGT CGTCTACTTGGCGGCGACCTCGGCCTCGTGTCCGAGATGGAGGCCCGTCA CGCCGCCCTACAGAGCACAGAAGAAGGGCGCGCGACTCGAGATTTCCTCG TACACGGACGAGAGGAGGGAGTCGGAACCTGCGATGGCACGCCCGCTGGT TTCAAGTACCTCTCTGAGGCAGACGGCGCACAGTTCGCCAAGCAAGTGAT TGAGCAAAACCTGAAGCTTGGTGAGCATCAACTACAGGAGAGCAAGGTTG CACTCAAACGAAAGAGGATCGAAGACCTTGTGCAGAGCTACAGAGAGCTC AAAGGTCTTGGTGTTCATCTCGGGGGACGCACCCTAGTCGAGCTACGCGA CAACGTGACAATCCTCAGCCGCCAAGACGTCATTGTAAAAAATGCGATGG CTGTCGCTGCCCCGCTCACACAAGACTCGCGTACGCCGACTCACGAGCTT GACGCGGATCACAGGGGAAGGGAGACGGGCATCGTGATCCTGTCAAACAA AATTGGAATAAGGGTTCCTTAAAAAAATGTCTGGAGTTGTCGGTAAACTG ATGAAAAAATTGTACATCATCAAGTACGGCCTTGCTCCAGACTCCAAAGC TTACATGAAGAGACAGACGCTTTTTACGGGACGCCCTGTCGAGGAAAACA CGTACTACGAACGAGACGAAGATATAATCGAACAAGCTGTCCGGGAAATC ATG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10698:1270..2272-

>mRNA_H-canaliculatus_F_contig10698.666.1 ID=mRNA_H-canaliculatus_F_contig10698.666.1|Name=mRNA_H-canaliculatus_F_contig10698.666.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1644bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10698:1270..2272- (Hapterophycus canaliculatus Oshoro5f female)
ATGGACCTCATGGTTAGAATGGCCAGCTCGACGATCCGCGTAGACAAAGA
CACAAAGACTGGAAGCGTGATAGAAACAATCCGACTGGTGCTTGGAGGCG
ACTCGAGTGCGGCGAAAACATGCTTCAGGCGGCTTATTCTGGCGTACCCC
GACTTGGGGTCTCGGTGCCCTCAACTTCGCATCAATGGAAAGGGGAAGGA
AACACCGGTCGCCGATGCGAAAACGCTCATAGAAATCGTATGGCTCCTCC
CTGGCAAAAAAGCTCGCGAGTTCCGTCGCCAGTCATCCGAAGAGGTGTGT
CGTCTACTTGGCGGCGACCTCGGCCTCGTGTCCGAGATGGAGGCCCGTCA
CGCCGCCCTACAGAGCACAGAAGAAGGGCGCGCGACTCGAGATTTCCTCG
TACACGGACGAGAGGAGGGAGTCGGAACCTGCGATGGCACGCCCGCTGGT
TTCAAGTACCTCTCTGAGGCAGACGGCGCACAGTTCGCCAAGCAAGTGAT
TGAGCAAAACCTGAAGCTTGGTGAGCATCAACTACAGGAGAGCAAGGTTG
CACTCAAACGAAAGAGGATCGAAGACCTTGTGCAGAGCTACAGAGAGCTC
AAAGGTCTTGGTGTTCATCTCGGGGGACGCACCCTAGTCGAGCTACGCGA
CAACGTGACAATCCTCAGCCGCCAAGACGTCATTGTAAAAAATGCGATGG
CTGTCGCTGCCCCGCTCACACAAGACTCGCGTACGCCGACTCACGAGCTT
GACGCGGATCACAGGGGAAGGGAGACGGGCATCGTGATCCTGTCAAACAA
AATTGGAATAAGGGTTCCTTAAATGGACCTCATGGTTAGAATGGCCAGCT
CGACGATCCGCGTAGACAAAGACACAAAGACTGGAAGCGTGATAGAAACA
ATCCGACTGGTGCTTGGAGGCGACTCGAGTGCGGCGAAAACATGCTTCAG
GCGGCTTATTCTGGCGTACCCCGACTTGGGGTCTCGGTGCCCTCAACTTC
GCATCAATGGAAAGGGGAAGGAAACACCGGTCGCCGATGCGAAAACGCTC
ATAGAAATCGTATGGCTCCTCCCTGGCAAAAAAGCTCGCGAGTTCCGTCG
CCAGTCATCCGAAGAGGTGTGTCGTCTACTTGGCGGCGACCTCGGCCTCG
TGTCCGAGATGGAGGCCCGTCACGCCGCCCTACAGAGCACAGAAGAAGGG
CGCGCGACTCGAGATTTCCTCGTACACGGACGAGAGGAGGGAGTCGGAAC
CTGCGATGGCACGCCCGCTGGTTTCAAGTACCTCTCTGAGGCAGACGGCG
CACAGTTCGCCAAGCAAGTGATTGAGCAAAACCTGAAGCTTGGTGAGCAT
CAACTACAGGAGAGCAAGGTTGCACTCAAACGAAAGAGGATCGAAGACCT
TGTGCAGAGCTACAGAGAGCTCAAAGGTCTTGGTGTTCATCTCGGGGGAC
GCACCCTAGTCGAGCTACGCGACAACGTGACAATCCTCAGCCGCCAAGAC
GTCATTGTAAAAAATGCGATGGCTGTCGCTGCCCCGCTCACACAAGACTC
GCGTACGCCGACTCACGAGCTTGACGCGGATCACAGGGGAAGGGAGACGG
GCATCGTGATCCTGTCAAACAAAATTGGAATAAGGGTTCCTTAA
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