mRNA_H-canaliculatus_F_contig10533.515.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10533.515.1
Unique NamemRNA_H-canaliculatus_F_contig10533.515.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10533.515.1 vs. uniprot
Match: A0A6H5JD21_9PHAE (Aa_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD21_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 3.070e-25
Identity = 46/60 (76.67%), Postives = 57/60 (95.00%), Query Frame = 1 
Query:    1 FDSFTGFVGGICAVPLALVYPLLFHLSLFGDLDTPRQKALHWGLLVGGVLAGVASTAVAL 180
            FDSFTG VGG+C+VPLALVYP+LFH+SLFG+LD+PR++A+HW LLVGGVL+GVAST VA+
Sbjct:  392 FDSFTGIVGGLCSVPLALVYPMLFHMSLFGELDSPRKQAMHWVLLVGGVLSGVASTVVAM 451
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BLAST of mRNA_H-canaliculatus_F_contig10533.515.1 vs. uniprot
Match: D7FZM6_ECTSI (Aa_trans domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZM6_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 5.620e-25
Identity = 46/60 (76.67%), Postives = 57/60 (95.00%), Query Frame = 1 
Query:    1 FDSFTGFVGGICAVPLALVYPLLFHLSLFGDLDTPRQKALHWGLLVGGVLAGVASTAVAL 180
            FDSFTG VGG+C+VPLALVYP+LFH+SLFG+LD+PR++A+HW LLVGGVL+GVAST VA+
Sbjct:  553 FDSFTGIVGGLCSVPLALVYPMLFHMSLFGELDSPRKQAMHWVLLVGGVLSGVASTVVAM 612
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BLAST of mRNA_H-canaliculatus_F_contig10533.515.1 vs. uniprot
Match: A0A517L3Q2_9PEZI (Aa_trans domain-containing protein n=4 Tax=Venturia TaxID=5024 RepID=A0A517L3Q2_9PEZI)

HSP 1 Score: 53.9 bits (128), Expect = 8.470e-7
Identity = 23/59 (38.98%), Postives = 34/59 (57.63%), Query Frame = 1 
Query:    1 FDSFTGFVGGICAVPLALVYPLLFHLSLFGDLDTPRQKALHWGLLVGGVLAGVASTAVA 177
            FD     +G +C   + ++ PL FHL LFG+  T R+K L+W +L+   + GV ST  A
Sbjct:  594 FDRIMTLMGSLCGFTVCIILPLAFHLKLFGNELTKREKFLNWFMLIASSIMGVVSTVFA 652
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10533.515.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JD21_9PHAE3.070e-2576.67Aa_trans domain-containing protein n=1 Tax=Ectocar... [more]
D7FZM6_ECTSI5.620e-2576.67Aa_trans domain-containing protein n=1 Tax=Ectocar... [more]
A0A517L3Q2_9PEZI8.470e-738.98Aa_trans domain-containing protein n=4 Tax=Venturi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10533contigH-canaliculatus_F_contig10533:4425..4619 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.4
Seed ortholog evalue2.1e-20
Seed eggNOG ortholog2880.D7FZM6
Preferred nameAVT4
KEGG koko:K14209
KEGG TC2.A.18.8
KEGG Pathwayko04138,map04138
GOsGO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0003333,GO:0003674,GO:0005215,GO:0005290,GO:0005302,GO:0005342,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0006810,GO:0006811,GO:0006812,GO:0006820,GO:0006855,GO:0006865,GO:0006868,GO:0007034,GO:0008150,GO:0008324,GO:0008509,GO:0008514,GO:0015075,GO:0015171,GO:0015173,GO:0015174,GO:0015175,GO:0015179,GO:0015181,GO:0015186,GO:0015188,GO:0015189,GO:0015238,GO:0015318,GO:0015658,GO:0015711,GO:0015801,GO:0015802,GO:0015803,GO:0015804,GO:0015807,GO:0015809,GO:0015817,GO:0015824,GO:0015828,GO:0015849,GO:0015893,GO:0016020,GO:0016021,GO:0022857,GO:0031090,GO:0031224,GO:0032974,GO:0034220,GO:0034486,GO:0042221,GO:0042493,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044232,GO:0044422,GO:0044424,GO:0044425,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045117,GO:0046618,GO:0046942,GO:0046943,GO:0050896,GO:0051179,GO:0051234,GO:0055085,GO:0061459,GO:0071702,GO:0071705,GO:0089707,GO:0089708,GO:0089709,GO:0098588,GO:0098655,GO:0098656,GO:0098805,GO:0098852,GO:1901474,GO:1902022,GO:1902023,GO:1902024,GO:1902475,GO:1903400,GO:1903401,GO:1903825,GO:1903826,GO:1905039,GO:1990816,GO:1990818,GO:1990822,GO:1990961
EggNOG free text desc.amino acid transmembrane transporter activity
EggNOG OGsCOG0814@1,KOG1304@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000,ko04131
Hectar predicted targeting categorysignal anchor
Exons1
Model size195
Cds size195
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928705.2826936-CDS-H-canaliculatus_F_contig10533:4424..46191622928705.2826936-CDS-H-canaliculatus_F_contig10533:4424..4619Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10533 4425..4619 -
1696845531.7408488-CDS-H-canaliculatus_F_contig10533:4424..46191696845531.7408488-CDS-H-canaliculatus_F_contig10533:4424..4619Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10533 4425..4619 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10533.515.1prot_H-canaliculatus_F_contig10533.515.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10533 4425..4619 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10533.515.1

>prot_H-canaliculatus_F_contig10533.515.1 ID=prot_H-canaliculatus_F_contig10533.515.1|Name=mRNA_H-canaliculatus_F_contig10533.515.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=65bp
FDSFTGFVGGICAVPLALVYPLLFHLSLFGDLDTPRQKALHWGLLVGGVL
AGVASTAVALVKLL*
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mRNA from alignment at H-canaliculatus_F_contig10533:4425..4619-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10533.515.1 ID=mRNA_H-canaliculatus_F_contig10533.515.1|Name=mRNA_H-canaliculatus_F_contig10533.515.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=195bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10533:4425..4619- (Hapterophycus canaliculatus Oshoro5f female)
TTCGACAGCTTCACGGGTTTCGTCGGAGGTATTTGCGCGGTGCCCCTTGC
CCTGGTTTACCCCTTGCTCTTCCATCTAAGCCTCTTCGGCGATCTCGACA
CCCCTCGACAGAAAGCGCTGCACTGGGGTTTGTTAGTCGGAGGCGTTCTT
GCAGGAGTGGCGTCCACCGCCGTGGCCCTCGTGAAGTTGTTGTAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10533:4425..4619-

>mRNA_H-canaliculatus_F_contig10533.515.1 ID=mRNA_H-canaliculatus_F_contig10533.515.1|Name=mRNA_H-canaliculatus_F_contig10533.515.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=390bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10533:4425..4619- (Hapterophycus canaliculatus Oshoro5f female)
TTCGACAGCTTCACGGGTTTCGTCGGAGGTATTTGCGCGGTGCCCCTTGC
CCTGGTTTACCCCTTGCTCTTCCATCTAAGCCTCTTCGGCGATCTCGACA
CCCCTCGACAGAAAGCGCTGCACTGGGGTTTGTTAGTCGGAGGCGTTCTT
GCAGGAGTGGCGTCCACCGCCGTGGCCCTCGTGAAGTTGTTGTAGTTCGA
CAGCTTCACGGGTTTCGTCGGAGGTATTTGCGCGGTGCCCCTTGCCCTGG
TTTACCCCTTGCTCTTCCATCTAAGCCTCTTCGGCGATCTCGACACCCCT
CGACAGAAAGCGCTGCACTGGGGTTTGTTAGTCGGAGGCGTTCTTGCAGG
AGTGGCGTCCACCGCCGTGGCCCTCGTGAAGTTGTTGTAG
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