mRNA_H-canaliculatus_F_contig10424.435.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10424.435.1
Unique NamemRNA_H-canaliculatus_F_contig10424.435.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10424.435.1 vs. uniprot
Match: D8LDI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDI2_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 3.950e-11
Identity = 33/40 (82.50%), Postives = 37/40 (92.50%), Query Frame = 1 
Query:    1 MASDQQAEVGWTPPRAPAAPRQLSGSSPGSSRGKLRSEYQ 120
            MA+D+Q E+GWTPPRAPA  R+LSGSSPGSSRGKLRSEYQ
Sbjct:    1 MAADRQGELGWTPPRAPAVSRRLSGSSPGSSRGKLRSEYQ 40
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10424.435.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LDI2_ECTSI3.950e-1182.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10424contigH-canaliculatus_F_contig10424:825..2557 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-15_000500.1
Exons2
Model size871
Cds size870
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928685.9080133-CDS-H-canaliculatus_F_contig10424:824..15681622928685.9080133-CDS-H-canaliculatus_F_contig10424:824..1568Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10424 825..1568 -
1696845526.2064567-CDS-H-canaliculatus_F_contig10424:824..15681696845526.2064567-CDS-H-canaliculatus_F_contig10424:824..1568Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10424 825..1568 -
1622928685.920129-CDS-H-canaliculatus_F_contig10424:2431..25571622928685.920129-CDS-H-canaliculatus_F_contig10424:2431..2557Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10424 2432..2557 -
1696845526.21788-CDS-H-canaliculatus_F_contig10424:2431..25571696845526.21788-CDS-H-canaliculatus_F_contig10424:2431..2557Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10424 2432..2557 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10424.435.1prot_H-canaliculatus_F_contig10424.435.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10424 825..2557 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10424.435.1

>prot_H-canaliculatus_F_contig10424.435.1 ID=prot_H-canaliculatus_F_contig10424.435.1|Name=mRNA_H-canaliculatus_F_contig10424.435.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=290bp
MASDQQAEVGWTPPRAPAAPRQLSGSSPGSSRGKLRSEYQARARLGGMTI
KKRRSGALKFSANTTDRRPSAAAAAAAAATGDSWGCPPSPKAGRGASERA
PPPPPPPRRGSHQTSLLDFCHDSSVAPPPPPQQQQQKQQKQQQQPARGAA
PGFGLLVPPGEPTMVAASPPGMPQEQQQQQAVSDSAVMDMDTSEDFADDG
DDDERSDRGQQEPQPTPFVQSSSSSGSSSTVRTPAASPAPGRPATVTPPT
QSPSDSLGLLGGGAAAALSSRNGGGASPAGGGGGGGGEIG
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mRNA from alignment at H-canaliculatus_F_contig10424:825..2557-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10424.435.1 ID=mRNA_H-canaliculatus_F_contig10424.435.1|Name=mRNA_H-canaliculatus_F_contig10424.435.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1733bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10424:825..2557- (Hapterophycus canaliculatus Oshoro5f female)
ATGGCTTCTGATCAGCAAGCAGAGGTAGGGTGGACACCACCGCGAGCACC
AGCGGCGCCCCGGCAGCTTTCGGGTTCGAGCCCTGGGTCTTCGAGAGGAA
AGCTGCGATCGGAGTATCAGGCAAGAGTCTTGCGCAACCAGCGGCCCTTG
TGTTTCTCTTTTTGTACATCAGCAGTATCTCCGTTTGTTCTGTCCGTGTC
GCGAAGGACTCCAGTGAGTCTGCGCTCTTGAAAAACGGCACCATTGGGGA
CTTGATTGGAGACGAAAGACAGATGTTTCGATCACCTCTTAGGTAGCTTA
AGGGTTCAGCTTCTCAGCAGCGGATCCTGCATTTTTGTACAACACTACAT
TCGCGTCTTCTCGTGTTCTGAACCCTCGACCAATTTCGGTACCGTCAAGG
ATTCGAACAAGAAACGCAACATCGACGGAAGCAGGTCAAGCATTTTGAGT
GTCCTTCTCGGGACGCCACACCGACGGAGACAGCGCAGTTCTTAGCTATG
TTTTCCGCAAGTGACGCCACGCGCAAGACTCCTTGCACCTGGGTGCCTGA
GGCTCTGGTCTGCGCAATCATAGATTTGTCCTTCGCAGACGTCCTGTGTT
GTGTGCATGTCGCCAGACCGAGAAGCAAATATGTATGTGGTCTGTTCATG
ATCTCCTTCGGCCGTTTTTTACCAAGTGTTCTCCCACGGATTGAAACGGC
AGATACAAGACCCCAACTCGTCCGCGCAAATCAGACTCTACCGGCTTCGT
GATAGTGCACCGGCCGCGAAGGTTTCTGCGAGCTCTATGGACCATCGTGA
ACCATCATGTCTTCTTGGTTGTGCTCTCAACGCCCCCTCCTGGCTCACGG
GCCGAGCGAATTCGCGGGTTTCGTAGTGAGGACGGCATGTGGGCTCAATT
TTGCTCTCATACACAAAACCCCACTCAAACACAAGCACACACTCTCAATT
CATCTCCGTAGCTGTTGTCTTCTGATTGACATACCTCAGGCACGGCTCGG
TGGGATGACGATCAAGAAGCGCAGGTCAGGGGCCCTCAAATTCTCGGCCA
ACACAACCGACCGCCGTCCCAGTGCTGCCGCTGCTGCCGCCGCCGCGGCC
ACTGGGGACTCATGGGGTTGCCCACCAAGCCCGAAGGCCGGGAGAGGAGC
GAGTGAGCGAGCGCCGCCGCCGCCGCCACCCCCAAGACGAGGAAGCCATC
AGACCTCTTTGTTGGACTTCTGCCACGACTCAAGCGTGGCGCCGCCGCCG
CCGCCGCAACAGCAGCAACAGAAGCAACAGAAGCAACAGCAGCAGCCTGC
TAGAGGAGCGGCGCCAGGCTTCGGGCTGTTGGTACCGCCGGGCGAGCCGA
CGATGGTGGCAGCGTCTCCTCCAGGAATGCCTCAGGAACAGCAACAGCAG
CAAGCGGTCTCCGACTCCGCTGTGATGGATATGGACACCTCTGAGGATTT
CGCCGACGACGGTGACGACGACGAAAGAAGTGATCGAGGACAGCAAGAGC
CGCAGCCAACCCCTTTTGTCCAATCGAGCAGCAGCAGCGGCAGCAGTAGC
ACGGTGCGTACACCCGCTGCAAGTCCCGCCCCCGGACGGCCGGCGACGGT
TACACCGCCGACGCAATCTCCATCGGACTCGTTGGGGCTACTCGGCGGCG
GCGCCGCGGCGGCCCTATCGAGCAGGAACGGCGGGGGCGCGAGTCCGGCC
GGCGGCGGCGGAGGCGGTGGCGGCGAGATCGGT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10424:825..2557-

>mRNA_H-canaliculatus_F_contig10424.435.1 ID=mRNA_H-canaliculatus_F_contig10424.435.1|Name=mRNA_H-canaliculatus_F_contig10424.435.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1740bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10424:825..2557- (Hapterophycus canaliculatus Oshoro5f female)
ATGGCTTCTGATCAGCAAGCAGAGGTAGGGTGGACACCACCGCGAGCACC
AGCGGCGCCCCGGCAGCTTTCGGGTTCGAGCCCTGGGTCTTCGAGAGGAA
AGCTGCGATCGGAGTATCAGGCAAGAATGGCTTCTGATCAGCAAGCAGAG
GTAGGGTGGACACCACCGCGAGCACCAGCGGCGCCCCGGCAGCTTTCGGG
TTCGAGCCCTGGGTCTTCGAGAGGAAAGCTGCGATCGGAGTATCAGGCAA
GAGCACGGCTCGGTGGGATGACGATCAAGAAGCGCAGGTCAGGGGCCCTC
AAATTCTCGGCCAACACAACCGACCGCCGTCCCAGTGCTGCCGCTGCTGC
CGCCGCCGCGGCCACTGGGGACTCATGGGGTTGCCCACCAAGCCCGAAGG
CCGGGAGAGGAGCGAGTGAGCGAGCGCCGCCGCCGCCGCCACCCCCAAGA
CGAGGAAGCCATCAGACCTCTTTGTTGGACTTCTGCCACGACTCAAGCGT
GGCGCCGCCGCCGCCGCCGCAACAGCAGCAACAGAAGCAACAGAAGCAAC
AGCAGCAGCCTGCTAGAGGAGCGGCGCCAGGCTTCGGGCTGTTGGTACCG
CCGGGCGAGCCGACGATGGTGGCAGCGTCTCCTCCAGGAATGCCTCAGGA
ACAGCAACAGCAGCAAGCGGTCTCCGACTCCGCTGTGATGGATATGGACA
CCTCTGAGGATTTCGCCGACGACGGTGACGACGACGAAAGAAGTGATCGA
GGACAGCAAGAGCCGCAGCCAACCCCTTTTGTCCAATCGAGCAGCAGCAG
CGGCAGCAGTAGCACGGTGCGTACACCCGCTGCAAGTCCCGCCCCCGGAC
GGCCGGCGACGGTTACACCGCCGACGCAATCTCCATCGGACTCGTTGGGG
CTACTCGGCGGCGGCGCCGCGGCGGCCCTATCGAGCAGGAACGGCGGGGG
CGCGAGTCCGGCCGGCGGCGGCGGAGGCGGTGGCGGCGAGATCGGTGCAC
GGCTCGGTGGGATGACGATCAAGAAGCGCAGGTCAGGGGCCCTCAAATTC
TCGGCCAACACAACCGACCGCCGTCCCAGTGCTGCCGCTGCTGCCGCCGC
CGCGGCCACTGGGGACTCATGGGGTTGCCCACCAAGCCCGAAGGCCGGGA
GAGGAGCGAGTGAGCGAGCGCCGCCGCCGCCGCCACCCCCAAGACGAGGA
AGCCATCAGACCTCTTTGTTGGACTTCTGCCACGACTCAAGCGTGGCGCC
GCCGCCGCCGCCGCAACAGCAGCAACAGAAGCAACAGAAGCAACAGCAGC
AGCCTGCTAGAGGAGCGGCGCCAGGCTTCGGGCTGTTGGTACCGCCGGGC
GAGCCGACGATGGTGGCAGCGTCTCCTCCAGGAATGCCTCAGGAACAGCA
ACAGCAGCAAGCGGTCTCCGACTCCGCTGTGATGGATATGGACACCTCTG
AGGATTTCGCCGACGACGGTGACGACGACGAAAGAAGTGATCGAGGACAG
CAAGAGCCGCAGCCAACCCCTTTTGTCCAATCGAGCAGCAGCAGCGGCAG
CAGTAGCACGGTGCGTACACCCGCTGCAAGTCCCGCCCCCGGACGGCCGG
CGACGGTTACACCGCCGACGCAATCTCCATCGGACTCGTTGGGGCTACTC
GGCGGCGGCGCCGCGGCGGCCCTATCGAGCAGGAACGGCGGGGGCGCGAG
TCCGGCCGGCGGCGGCGGAGGCGGTGGCGGCGAGATCGGT
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