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Homology
BLAST of mRNA_H-canaliculatus_F_contig10193.213.1 vs. uniprot
Match: D7FV99_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV99_ECTSI) HSP 1 Score: 119 bits (297), Expect = 1.980e-24 Identity = 55/116 (47.41%), Postives = 81/116 (69.83%), Query Frame = 1 Query: 403 GDEPVSMGEYFNIFCYGNTPYECELVEDLAEMVYNGDFKCQVCDMDGVRQPTGGEEDLIGLADRDADDSGSDSWDTRDFIIVGLSGAVALSVIVGSAILVWLQCKKKERPAEASDP 750
G+ V+MGE+ +I+C+ N PYECE V D +++V+NG+FKCQ+CD+DGV+Q +G + DL G D+ S S+SWD++D+II+GLS A+AL +I+ LV KK P+E P
Sbjct: 366 GETTVTMGEFDDIYCFANEPYECEFVYDQSDIVHNGEFKCQICDIDGVQQVSGTDGDLTGSIDQS---SSSNSWDSKDYIIIGLSAALALCIILAIGFLVARAYKKHRAPSETQPP 478
BLAST of mRNA_H-canaliculatus_F_contig10193.213.1 vs. uniprot
Match: D7FVA4_ECTSI (Probable extracellular nuclease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVA4_ECTSI) HSP 1 Score: 97.4 bits (241), Expect = 1.690e-17 Identity = 43/101 (42.57%), Postives = 71/101 (70.30%), Query Frame = 1 Query: 403 GDEPVSMGEYFNIFCYGNTPYECELVEDLAEMVYNGDFKCQVCDMDGVRQPTGGEEDLIGLADRDADDSGSDSWDTRDFIIVGLSGAVALSVIVGSAILVW 705
G+ V+MGE+ +++C+ N PYECE V D +++V++G+FKCQ+CD++G RQ +G ++DLI ++R D DS I++GLS A+ L+++V A+ VW
Sbjct: 366 GETTVTMGEFNDMYCFANEPYECEFVYDQSDIVHSGEFKCQICDIEGERQQSGTDDDLIDASERSID---GDSSSDNQGIVIGLSLALGLTLVVIGALAVW 463
BLAST of mRNA_H-canaliculatus_F_contig10193.213.1 vs. uniprot
Match: D7FVA0_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVA0_ECTSI) HSP 1 Score: 84.0 bits (206), Expect = 3.020e-13 Identity = 41/112 (36.61%), Postives = 66/112 (58.93%), Query Frame = 1 Query: 400 QGDEPVSMGEYFNIFCYGNTPYECELVEDLAEMVYNGDFKCQVCDMDGVRQPTGGEED--LIGLADRDAD--------------------DSGSDSWDTRDFIIVGLSGAVA 669
+G+ V MGE+ +++C+GN PYECE V D +++V++G+F CQ+C +DGVRQ G +D + G+ + S S SW+++D++I+GLS AVA
Sbjct: 330 EGNTTVVMGEFNDMYCFGNDPYECEFVYDQSDIVHSGEFNCQLCVIDGVRQEVSGTDDDSVEGIGQTSSSTSVQEGXXXXXXXXTGKIDQSSSSGSWESKDYVIIGLSAAVA 441
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Model size | 2472 |
| Cds size | 444 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928647.6306992-UTR-H-canaliculatus_F_contig10193:72..492 | 1622928647.6306992-UTR-H-canaliculatus_F_contig10193:72..492 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10193 73..492 + |
| 1696845512.159511-UTR-H-canaliculatus_F_contig10193:72..492 | 1696845512.159511-UTR-H-canaliculatus_F_contig10193:72..492 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10193 73..492 + |
| 1622928648.0262003-UTR-H-canaliculatus_F_contig10193:1262..2870 | 1622928648.0262003-UTR-H-canaliculatus_F_contig10193:1262..2870 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10193 1263..2870 + |
| 1696845512.1921153-UTR-H-canaliculatus_F_contig10193:1262..2870 | 1696845512.1921153-UTR-H-canaliculatus_F_contig10193:1262..2870 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10193 1263..2870 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928647.997553-CDS-H-canaliculatus_F_contig10193:492..653 | 1622928647.997553-CDS-H-canaliculatus_F_contig10193:492..653 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10193 493..653 + |
| 1696845512.1693697-CDS-H-canaliculatus_F_contig10193:492..653 | 1696845512.1693697-CDS-H-canaliculatus_F_contig10193:492..653 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10193 493..653 + |
| 1622928648.0117943-CDS-H-canaliculatus_F_contig10193:979..1262 | 1622928648.0117943-CDS-H-canaliculatus_F_contig10193:979..1262 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10193 980..1262 + |
| 1696845512.1809916-CDS-H-canaliculatus_F_contig10193:979..1262 | 1696845512.1809916-CDS-H-canaliculatus_F_contig10193:979..1262 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10193 980..1262 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig10193.213.1 >prot_H-canaliculatus_F_contig10193.213.1 ID=prot_H-canaliculatus_F_contig10193.213.1|Name=mRNA_H-canaliculatus_F_contig10193.213.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=148bp
MGEYFNIFCYGNTPYECELVEDLAEMVYNGDFKCQVCDMDGVRQPTGGEE
DLIGLADRDADDSGSDSWDTRDFIIVGLSGAVALSVIVGSAILVWLQCKK
KERPAEASDPGQPPTSTDPPLTTTDINAPAPVAPTTTTGAIQPTSQS* back to topmRNA from alignment at H-canaliculatus_F_contig10193:73..2870+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-canaliculatus_F_contig10193.213.1 ID=mRNA_H-canaliculatus_F_contig10193.213.1|Name=mRNA_H-canaliculatus_F_contig10193.213.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2798bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10193:73..2870+ (Hapterophycus canaliculatus Oshoro5f female)
CGACGAGCGTTTAACTACCTCCCGATGACCGATTCCGTCTGCACCGATTT
GTGGCGTAATTCGACACGGTATACCGTTTTCTGGCGTTCGCCCAAAACAG
AATTTGATGCCACGTCAAAGCATATGATTGTCAATTGGCGCCACGTTTTG
CCACGCTCACCCGCCACACATGAATGTGACGCCTGTCATTTGTACCCCAG
AACCTCTGAGCTCTGGCCGAAGGGAGTACAGGTATTCAGGTTTGGAAGGT
GCGTCCCTGTACTGAGGTGCGCAGGGTATGCAGTCGAACTACATGGAAAA
GGTGAGCACAAGAAAATAATTGCGTGTTGTTGCCGACCATGGATTTGAAC
ACTTGAACATTTCCAACTCGCGACCGATTTGGCGTTTGTGGCCCGTGTGC
AGGGGGACGAACCGGTTTCGATGGGTGAGTATTTCAACATTTTTTGCTAC
GGCAACACTCCGTACGAGTGCGAACTCGTCGAGGATCTCGCCGAAATGGT
TTACAATGGCGACTTCAAGTGCCAGGTATGCGACATGGATGGCGTGCGGC
AGCCAACCGGCGGCGAAGAGGACTTGATCGGGTGAGTCGATATTTTTATC
GAGGGGAAATCACTTCTCAAACACCAACATCAGCTCGTGGCGAGCCCACC
GATGCAGAACCCATGGACATGACGTCCGAATACGCGCACACCAAGCATGG
CATGCCTATCGAAGCTACAGTTGACAGTGGTGCTCACATTCCTCCTTTCT
CAAGTTGACACGACAGGTCTTGGCTGCATCTCACTCCCGTCAATTTGAAT
CGTGCACTCTCACCCGCTCCGCCCTATTCCGCATCCAAAATACCGTTCGC
ACTGAACTACGCCAAGCAGTAGTCTAAGTCCACCCTTTCCTGCTCCATCG
CTTTCAGATTGGCCGACCGTGACGCTGACGACTCGGGCTCCGATTCATGG
GATACTCGAGACTTCATCATTGTTGGCCTCTCCGGTGCTGTGGCATTGTC
GGTCATTGTGGGTTCCGCTATTCTAGTGTGGCTGCAGTGCAAGAAAAAGG
AGCGACCTGCCGAAGCATCAGACCCAGGGCAGCCTCCCACATCAACAGAC
CCCCCTCTCACAACGACGGACATAAATGCGCCTGCCCCAGTAGCTCCAAC
TACCACGACAGGCGCGATCCAGCCTACAAGCCAATCCTGAAAGCATATAT
TGGGCGTGATTGAAGGGGTGGGGGGCTGGTGGGGCTGTTGCTGATAGGGA
GGAACGAGAACTTTCCGTGTCGTGGTGATGCAGGCCTACCTCTTGCTGGG
ATGGTCTGTATTGTTTTATCCATTCATGAAACTTGAAATGGGTTCAACCT
GCTTGACTCAGGGAGCTCAAGGGCGAGACGAGGTTTTTTTTTGTTTATAT
TTCGCCAAGAAAAGATTTAAGGGGTTGAGGGGTTATGGCGTTCGGACTTT
CATGAGCATGCAAAGGCGACTTTTCAAGACAGCCCACCCCCTCTACTTCT
GCACCTCCAAGATGACCCCTCCCAATCCTGACCTGCCTTGCTTGAACGCA
TAGCACCTCAAGGCTTTGGCTTCTTCGATGGAGGGAGTGGACGCACGTGC
ACGCAAAGATAAAGGTCTGCGTTTAGTTTTTCGCAGGGTTGTGCAGGGTT
GTGAATCGGGGAGATTGAATCGGGCTTATTGAATCGAATTTCGGTTGGGA
AAATTAGGACCACGCTTATGCCGGCCTTTAGCCGATGTTCGCGCAAAGTA
TGTAGAAACGTTTGAAGAAACTGTTCCGTGAGGAAGTGCGATAATATGCC
TGAAGTCCGCTGTTGACTTCCTCATGTACGGATTCTTACAAGAACAAACG
ACGTTTGAGGGCGTTTGGTTAGAAAGAACATCAAAAGTTGGTGTGAGTGA
GATTCGGAGTACGGAAGAAAGCAATTCGAGGGAACACGACGAAGGAGAGG
TTTCTTGGGATATAGACGGAATAAGCCGCTGGTTATTGCAACCCACCGAA
TTGCCTAGCGCTCTCCTTACCGGTGTCCCGGAAAATACCTGGTGCGGGGC
GCCTAACGGGGTCCCCCAGCGATACCGAAGTTAATCCTTTCGATAGAAGT
CGACATATAGCCTTACAGTAGGCGCCCGCTGTCAAGAACACAAACTTAGA
AGAAACAAGAGCTCAAATTTCCCAGAAAAATAAGAAAGAACGGCTAAGAA
ACACGGCTCAATCTTGGCCAAAGTTTAGAAAGAAAAGTCTCGATGAAAAA
CCGGGGCTACTGATACCCATCCCCGGTAGTGCATTTTTTGTCCCGGCGAA
GGGGGGCAGTTTTTTTTTGTGTCGCCCCCTCCCGCCTCCGTGTAGTTTTT
GGGTCTGTTTTTTGCTAACATCGCGGACCATCACATGCTCTTGGGGGGGA
ACGTGACCTTGTATGTAGCGCCAGCGACACATTTATTCACCGCTTTTGTG
TTTCGCGTCTGTGTATTATCCGCCTTTCGTCGCCCATAGTGGGAAGACAA
GTCACGTAGAGGGAAGGGCAGCCGGGCAACGCATGCATGTATTCGCAAGC
AAATACAAAAAGAAAATATTGCCGCTTTCCGGCTCTAGGCTACGTACTGC
CCATCCGGGTGAGCTAGCTTTACGGAGTTGTAGGAACATCTCCGTAGAAG
AGCAGGGGTGTACACATGACGTAATGGCATCTATATTTAGGGTCTCGGTG
ACATATTATGATCACCGCCATCTGCGTGTCCCCTGGAAAGCGCGTGCCGC
TTATTCCAGACCTTGCTTTGATCCGAAATCAATGAAGACATCAACAAC back to topCoding sequence (CDS) from alignment at H-canaliculatus_F_contig10193:73..2870+ >mRNA_H-canaliculatus_F_contig10193.213.1 ID=mRNA_H-canaliculatus_F_contig10193.213.1|Name=mRNA_H-canaliculatus_F_contig10193.213.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=888bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10193:73..2870+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGGTGAGTATTTCAACATTTTTTGCTACGGCAACACTCCGTACGAGTG
CGAACTCGTCGAGGATCTCGCCGAAATGGTTTACAATGGCGACTTCAAGT
GCCAGGTATGCGACATGGATGGCGTGCGGCAGCCAACCGGCGGCGAAGAG
GACTTGATCGGATGGGTGAGTATTTCAACATTTTTTGCTACGGCAACACT
CCGTACGAGTGCGAACTCGTCGAGGATCTCGCCGAAATGGTTTACAATGG
CGACTTCAAGTGCCAGGTATGCGACATGGATGGCGTGCGGCAGCCAACCG
GCGGCGAAGAGGACTTGATCGGATTGGCCGACCGTGACGCTGACGACTCG
GGCTCCGATTCATGGGATACTCGAGACTTCATCATTGTTGGCCTCTCCGG
TGCTGTGGCATTGTCGGTCATTGTGGGTTCCGCTATTCTAGTGTGGCTGC
AGTGCAAGAAAAAGGAGCGACCTGCCGAAGCATCAGACCCAGGGCAGCCT
CCCACATCAACAGACCCCCCTCTCACAACGACGGACATAAATGCGCCTGC
CCCAGTAGCTCCAACTACCACGACAGGCGCGATCCAGCCTACAAGCCAAT
CCTGAATTGGCCGACCGTGACGCTGACGACTCGGGCTCCGATTCATGGGA
TACTCGAGACTTCATCATTGTTGGCCTCTCCGGTGCTGTGGCATTGTCGG
TCATTGTGGGTTCCGCTATTCTAGTGTGGCTGCAGTGCAAGAAAAAGGAG
CGACCTGCCGAAGCATCAGACCCAGGGCAGCCTCCCACATCAACAGACCC
CCCTCTCACAACGACGGACATAAATGCGCCTGCCCCAGTAGCTCCAACTA
CCACGACAGGCGCGATCCAGCCTACAAGCCAATCCTGA back to top
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