Homology
BLAST of mRNA_H-canaliculatus_F_contig10167.193.1 vs. uniprot
Match: A0A6H5JUZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUZ4_9PHAE) HSP 1 Score: 76.6 bits (187), Expect = 2.020e-14 Identity = 37/65 (56.92%), Postives = 42/65 (64.62%), Query Frame = 2 Query: 65 GAHFWYKARDAHWWLAKISKSIGASSNPVRYIVRFLDDPGPIELPLPSDMYSHSMTAACGSWCLQ 259
GA FWYK RD WWL KI+ G Y+VRFLDDPGP++L LP YS + TA GSWCLQ
Sbjct: 1302 GAFFWYKTRDGLWWLGKIT---GPPLQSDLYVVRFLDDPGPVKLALPDVRYSTAETAVSGSWCLQ 1363
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Model size | 261 |
| Cds size | 261 |
| Stop | 0 |
| Start | 0 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928646.1774368-CDS-H-canaliculatus_F_contig10167:90..154 | 1622928646.1774368-CDS-H-canaliculatus_F_contig10167:90..154 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10167 91..154 + |
| 1696845511.4564176-CDS-H-canaliculatus_F_contig10167:90..154 | 1696845511.4564176-CDS-H-canaliculatus_F_contig10167:90..154 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10167 91..154 + |
| 1622928646.197256-CDS-H-canaliculatus_F_contig10167:354..551 | 1622928646.197256-CDS-H-canaliculatus_F_contig10167:354..551 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10167 355..551 + |
| 1696845511.4646149-CDS-H-canaliculatus_F_contig10167:354..551 | 1696845511.4646149-CDS-H-canaliculatus_F_contig10167:354..551 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10167 355..551 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig10167.193.1 >prot_H-canaliculatus_F_contig10167.193.1 ID=prot_H-canaliculatus_F_contig10167.193.1|Name=mRNA_H-canaliculatus_F_contig10167.193.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=87bp
GFSIVPRGLWLTPFQVSVLPAGRTLLVQGPRRPLVVGEDLQIHRCQLQPC
ALHRPLPGRPWTHRAAASIRHVLPFHDCRLWILVPPM back to topmRNA from alignment at H-canaliculatus_F_contig10167:91..551+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-canaliculatus_F_contig10167.193.1 ID=mRNA_H-canaliculatus_F_contig10167.193.1|Name=mRNA_H-canaliculatus_F_contig10167.193.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=461bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10167:91..551+ (Hapterophycus canaliculatus Oshoro5f female)
GGCTTCTCCATTGTTCCTCGCGGACTCTGGCTCACGCCTTTCCAGGTTTC
GGTTTTGCCGGCGGGCTGTAGCCGTTTAGAGACAACCGATTAGACTACTG
ACCAGTCAGCGGCTACAGAAGTTAGTCGTGGGCGTTCGAACCCCGTCACT
TTCACTCCGAGGAGGGCGTCTCCCCTTGCCAGCGCTCTATCGACTCCATC
AGGACTTCTAATGTTATCACTTAACGGCAACGTAGTCTAGTCGGTTGTCT
CTAAACGGCTACAGGGCGCACACTTCTGGTACAAGGCCCGCGACGCCCAC
TGGTGGTTGGCGAAGATCTCCAAATCCATCGGTGCCAGCTCCAACCCTGT
GCGCTACATCGTCCGCTTCCTGGACGACCCTGGACCCATCGAGCTGCCGC
TTCCATCCGACATGTACTCCCATTCCATGACTGCCGCCTGTGGATCCTGG
TGCCTCCAATG back to topCoding sequence (CDS) from alignment at H-canaliculatus_F_contig10167:91..551+ >mRNA_H-canaliculatus_F_contig10167.193.1 ID=mRNA_H-canaliculatus_F_contig10167.193.1|Name=mRNA_H-canaliculatus_F_contig10167.193.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=522bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10167:91..551+ (Hapterophycus canaliculatus Oshoro5f female)
GGCTTCTCCATTGTTCCTCGCGGACTCTGGCTCACGCCTTTCCAGGTTTC
GGTTTTGCCGGCGGGGCTTCTCCATTGTTCCTCGCGGACTCTGGCTCACG
CCTTTCCAGGTTTCGGTTTTGCCGGCGGGGCGCACACTTCTGGTACAAGG
CCCGCGACGCCCACTGGTGGTTGGCGAAGATCTCCAAATCCATCGGTGCC
AGCTCCAACCCTGTGCGCTACATCGTCCGCTTCCTGGACGACCCTGGACC
CATCGAGCTGCCGCTTCCATCCGACATGTACTCCCATTCCATGACTGCCG
CCTGTGGATCCTGGTGCCTCCAATGGGCGCACACTTCTGGTACAAGGCCC
GCGACGCCCACTGGTGGTTGGCGAAGATCTCCAAATCCATCGGTGCCAGC
TCCAACCCTGTGCGCTACATCGTCCGCTTCCTGGACGACCCTGGACCCAT
CGAGCTGCCGCTTCCATCCGACATGTACTCCCATTCCATGACTGCCGCCT
GTGGATCCTGGTGCCTCCAATG back to top
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