mRNA_H-canaliculatus_F_contig10147.165.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-canaliculatus_F_contig10147.165.1
Unique Name	mRNA_H-canaliculatus_F_contig10147.165.1
Type	mRNA
Organism	Hapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)

Homology

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BLAST of mRNA_H-canaliculatus_F_contig10147.165.1 vs. uniprot
Match: A0A6H5K975_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K975_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 1.280e-15
Identity = 50/138 (36.23%), Postives = 78/138 (56.52%), Query Frame = 1

Query:    1 SGVLPLLFAPVFTDVNSMEHYVRFSEIDAVADRTESAYNTISEKREVCHAFRNLIQSCSASTYMVGAPSYTASELGALEKTEREQVAK-------------------------GAVGNANAGESKHREVKQSAPSASG 339
            S ++P L AP+F+  +++  YVR   +  VADR      T + K  VC+AF++L+++CS S ++V +PS+TA  L  L+K+++EQV +                         G V N N GE+K++E+K SAPSASG
Sbjct:  121 SSIVPFLLAPIFSSPDNLGRYVRTMVVTEVADRISVEPGTPAGKAAVCNAFQDLVKACSWSCFVVRSPSFTAEGLHVLQKSQQEQVKQATRVIGVALGTIHKGLHITRNVVVNGVVTNCNVGEAKNKELKASAPSASG 258

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BLAST of mRNA_H-canaliculatus_F_contig10147.165.1 vs. uniprot
Match: D7FWW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWW9_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 8.250e-15
Identity = 51/138 (36.96%), Postives = 76/138 (55.07%), Query Frame = 1

Query:    1 SGVLPLLFAPVFTDVNSMEHYVRFSEIDAVADRTESAYNTISEKREVCHAFRNLIQSCSASTYMVGAPSYTASELGALEKTEREQVAK-------------------------GAVGNANAGESKHREVKQSAPSASG 339
            S   P L AP+F+  +++  YVR   +  VADR      T + K  VC+AF++L+++CS S ++V +PS+TA  L AL+K++ EQV +                         G V N N GE+K++E+K SAPSASG
Sbjct:  200 SSSFPFLLAPIFSSPDNLGRYVRTMVVTEVADRISVDPGTPAGKAAVCNAFQDLVKACSWSCFVVRSPSFTAEGLRALQKSQLEQVKQATRVMGVALGTIHKGLHIARNVVVNGVVTNCNVGEAKNKELKASAPSASG 337

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BLAST of mRNA_H-canaliculatus_F_contig10147.165.1 vs. uniprot
Match: A0A6H5JWC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWC7_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 4.740e-13
Identity = 48/137 (35.04%), Postives = 74/137 (54.01%), Query Frame = 1

Query:    4 GVLPLLFAPVFTDVNSMEHYVRFSEIDAVADRTESAYNTISEKREVCHAFRNLIQSCSASTYMVGAPSYTASELGALEKTEREQVAK-------------------------GAVGNANAGESKHREVKQSAPSASG 339
             + P L AP+F+  +++  YVR      VADR      T + K  VC+AF++L+++CS S ++V +PS+TA  L  L+ +++EQV +                         G V N N GE+K++E+K SAPSASG
Sbjct:   51 SIFPFLLAPIFSSPDNLGRYVRAMVAMEVADRISVEPVTPAGKAAVCNAFQDLVKACSWSCFVVRSPSFTAEGLHVLQNSQQEQVKQATRVIRVALGTIHKGLDIARNLVVNGVVTNCNVGEAKNKELKASAPSASG 187

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BLAST of mRNA_H-canaliculatus_F_contig10147.165.1 vs. uniprot
Match: A0A6H5KR91_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR91_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 9.280e-10
Identity = 44/136 (32.35%), Postives = 70/136 (51.47%), Query Frame = 1

Query:    7 VLPLLFAPVFTDVNSMEHYVRFSEIDAVADRTESAYNTISEKREVCHAFRNLIQSCSASTYMVGAPSYTASELGALEKTEREQVAK-------------------------GAVGNANAGESKHREVKQSAPSASG 339
            + P L AP+F+  +++  YVR   +  VADR     +T + K  VC+ F+ L+++CS S + V + S TA     L+++++EQV +                         G V N N  E+K++E+K SAPSASG
Sbjct:   54 IFPFLLAPIFSSPDNLGRYVRTMVVTEVADRISVEPDTPAGKEAVCNTFQYLVKACSWSCFEVRSQSLTAEGFHVLQQSQQEQVKQATRVIGVALGTIHKGLHIARNVVVNGDVTNCNVEEAKNKELKASAPSASG 189

[Close]

BLAST of mRNA_H-canaliculatus_F_contig10147.165.1 vs. uniprot
Match: A0A6H5JTN6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTN6_9PHAE)

HSP 1 Score: 50.8 bits (120), Expect = 5.660e-5
Identity = 25/40 (62.50%), Postives = 32/40 (80.00%), Query Frame = 1

Query:  139 VCHAFRNLIQSCSASTYMVGAPSYTASELGALEKTEREQV 258
            VC AFR+L+++CSAST+MV   SYT +EL  LEK +REQV
Sbjct:  349 VCRAFRDLMEACSASTFMVRLGSYTDAELRVLEKWQREQV 388

The following BLAST results are available for this feature:

BLAST of mRNA_H-canaliculatus_F_contig10147.165.1 vs. uniprot

BLAST of mRNA_H-canaliculatus_F_contig10147.165.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 5

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description
A0A6H5K975_9PHAE	1.280e-15	36.23	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7FWW9_ECTSI	8.250e-15	36.96	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5JWC7_9PHAE	4.740e-13	35.04	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KR91_9PHAE	9.280e-10	32.35	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JTN6_9PHAE	5.660e-5	62.50	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-canaliculatus_F_contig10147	contig	H-canaliculatus_F_contig10147:344..2271 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90	2022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	3
Model size	343
Cds size	339
Stop	0
Start	0

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-canaliculatus_F_contig10147.165.1	prot_H-canaliculatus_F_contig10147.165.1	Hapterophycus canaliculatus Oshoro5f female	polypeptide	H-canaliculatus_F_contig10147 344..2269 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622928643.3648403-CDS-H-canaliculatus_F_contig10147:343..397	1622928643.3648403-CDS-H-canaliculatus_F_contig10147:343..397	Hapterophycus canaliculatus Oshoro5f female	CDS	H-canaliculatus_F_contig10147 344..397 +
1696845509.8575156-CDS-H-canaliculatus_F_contig10147:343..397	1696845509.8575156-CDS-H-canaliculatus_F_contig10147:343..397	Hapterophycus canaliculatus Oshoro5f female	CDS	H-canaliculatus_F_contig10147 344..397 +
1622928643.379191-CDS-H-canaliculatus_F_contig10147:814..1015	1622928643.379191-CDS-H-canaliculatus_F_contig10147:814..1015	Hapterophycus canaliculatus Oshoro5f female	CDS	H-canaliculatus_F_contig10147 815..1015 +
1696845509.8672678-CDS-H-canaliculatus_F_contig10147:814..1015	1696845509.8672678-CDS-H-canaliculatus_F_contig10147:814..1015	Hapterophycus canaliculatus Oshoro5f female	CDS	H-canaliculatus_F_contig10147 815..1015 +
1622928643.389387-CDS-H-canaliculatus_F_contig10147:2185..2269	1622928643.389387-CDS-H-canaliculatus_F_contig10147:2185..2269	Hapterophycus canaliculatus Oshoro5f female	CDS	H-canaliculatus_F_contig10147 2186..2269 +
1696845509.8789747-CDS-H-canaliculatus_F_contig10147:2185..2269	1696845509.8789747-CDS-H-canaliculatus_F_contig10147:2185..2269	Hapterophycus canaliculatus Oshoro5f female	CDS	H-canaliculatus_F_contig10147 2186..2269 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-canaliculatus_F_contig10147:344..2271+
coding sequence from alignment at H-canaliculatus_F_contig10147:344..2271+

protein sequence of mRNA_H-canaliculatus_F_contig10147.165.1

>prot_H-canaliculatus_F_contig10147.165.1 ID=prot_H-canaliculatus_F_contig10147.165.1|Name=mRNA_H-canaliculatus_F_contig10147.165.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=113bp
SGVLPLLFAPVFTDVNSMEHYVRFSEIDAVADRTESAYNTISEKREVCHA
FRNLIQSCSASTYMVGAPSYTASELGALEKTEREQVAKGAVGNANAGESK
HREVKQSAPSASG

mRNA from alignment at H-canaliculatus_F_contig10147:344..2271+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-canaliculatus_F_contig10147.165.1 ID=mRNA_H-canaliculatus_F_contig10147.165.1|Name=mRNA_H-canaliculatus_F_contig10147.165.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1928bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10147:344..2271+ (Hapterophycus canaliculatus Oshoro5f female)
TCAGGCGTGCTCCCGCTGCTGTTCGCTCCAGTCTTCACGGACGTCAATTC
AATGGTAACTGTCTGCTTTCGCACAACTGGTGCCGGCAAGCACTATTTGG
ATTTTGCTAACCGCCCGTGACTGCATCATGCGAGGATGGCTGGGGATGAA
GACACCAAACAAATTGGCCGGCAATCGCGGGCCATGTGCAAGGTTTTCCG
TTCCAAAGTATTTTTCAGAGTTATGTCCTCAGGGGCGTGGAGGGGGGGGG
AGATCATGCTCATCCTCTTGTCTCTGATCTGGTTGCCAATCCGCGTTTTG
TGCCTACCGATTTCAGGCTCAACATGAGTTCTTCGCCTCCGCAGATGTTA
TAATCCCACACGCCATCCAGCACCCAGTTACTGAAATAATATCCACACCA
TCGCCTTCTCCTGTGGAGCCGAACGTGGTTTTTCAACAGACTCTTTGTCG
TACACCGTACCTTTTCCTCAGGAACATTACGTCCGATTCTCGGAGATTGA
TGCTGTCGCAGATAGGACGGAGTCGGCGTATAACACCATCTCGGAGAAGA
GGGAGGTGTGCCATGCATTCCGGAACCTCATCCAATCATGCAGTGCCAGC
ACCTACATGGTAGGGGCTCCCTCGTACACTGCATCAGAGCTAGGCGCGCT
TGAGAAGACCGAGAGAGAACAGGTGGGGCGATTCTCGTGGTTATTTTCTG
ATTTTTATCGAGGACGTGCTGCGGCGACATTTGAATGGTTTTGGGAGAAA
TCGAGTGATGATGGGGGGGGGGGCAAGGTGTGTCAGAGCGGAATAAACGC
TCTTGTCTTTACCCCAGTAAACCTTACTCTAAGGCCAGCTCACCGCGCTG
AACACATTGTGTCAACGCTGTCTCTGAGCGTGGTCCAACCCGGACATTCT
GATCTGTTTCGGGCATGAGGGTGGAGCGTTACGTACCACCTTCCCCAGAC
AGCTTTCCCTTCCAAACTCCGGTCAAAACCGCCTGATAGTGGAGAAGGGA
CAGAGAACCTCGAATCGTCATCTTGTGGGTCTCTAGTGACCAGGTCTCGC
ACAACTGGAGGCTCAGTAGCCGTTCACACCCCCAACGTCACCTGCGGCGG
CTTCGCCCCCCTACGTTTTTTACTGGCTCCGTTTTTTGCCTCAACTTCCT
ACACCACGATTCACATCTTTCACATCGTCGACCACTGTACTACATATTGG
GAGGAACCCTACGCTTGGACTCTCAGTCCGTTTTCAATGTGCAGGGGCGT
CGTTCGGAGAATGCGGCTCAAAAGTAGGTTGGCGATTCAGATGGACGCCT
TTGCTTTTCTCCAGCGGTCGGTGTGCCCCATTTTCTGCGCGCTTCGTCAC
CCGCATGCAGGTCAAGCAGACCTCTCTCGTAATGGGACAAGAGCTGGGCT
CTTTCCACAAAGGGCTGCATGCTGCCGACGATGTCCGAAACCTATGCGAG
CCCCTCTGCGGTACTCGCACGCCATCTGGAAAGTAGCTCGCTCACAACCG
AGATGCTGCTAGGGGTGCTGGTTTCCGCCATGTTTCCGGCGATCACGTCA
TCGACCATCGGTAGAGCGCGAGCTGTCCCGCCTTGCGAACCTGCTACGAG
GGTCACCGGTGCTGCTGTGAGGCGCGCTTTTCGCGCTTGGCTGATCGGCG
ATACCCGCTTATCAACCTGGCAACACGCCACTGCACCAGACGACAGCAAT
CCGACAAGCTTCCTGCTTCTAAAATGCGATACAGACCATGCCGTTCGTCC
TGAAGTACAGCCTTTTTCACACCGTGCGAGGGTTGATTCTCCATACACTT
AGTTCACAGTCTAGTCCTCCCTCTGCCATCGTGTTGTTGTAGGTCGCGAA
AGGTGCGGTCGGCAACGCGAATGCCGGGGAATCCAAGCACAGGGAGGTAA
AACAATCTGCGCCATCTGCCAGCGGTCG

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10147:344..2271+

>mRNA_H-canaliculatus_F_contig10147.165.1 ID=mRNA_H-canaliculatus_F_contig10147.165.1|Name=mRNA_H-canaliculatus_F_contig10147.165.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=678bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10147:344..2271+ (Hapterophycus canaliculatus Oshoro5f female)
TCAGGCGTGCTCCCGCTGCTGTTCGCTCCAGTCTTCACGGACGTCAATTC
AATGTCAGGCGTGCTCCCGCTGCTGTTCGCTCCAGTCTTCACGGACGTCA
ATTCAATGGAACATTACGTCCGATTCTCGGAGATTGATGCTGTCGCAGAT
AGGACGGAGTCGGCGTATAACACCATCTCGGAGAAGAGGGAGGTGTGCCA
TGCATTCCGGAACCTCATCCAATCATGCAGTGCCAGCACCTACATGGTAG
GGGCTCCCTCGTACACTGCATCAGAGCTAGGCGCGCTTGAGAAGACCGAG
AGAGAACAGGAACATTACGTCCGATTCTCGGAGATTGATGCTGTCGCAGA
TAGGACGGAGTCGGCGTATAACACCATCTCGGAGAAGAGGGAGGTGTGCC
ATGCATTCCGGAACCTCATCCAATCATGCAGTGCCAGCACCTACATGGTA
GGGGCTCCCTCGTACACTGCATCAGAGCTAGGCGCGCTTGAGAAGACCGA
GAGAGAACAGGTCGCGAAAGGTGCGGTCGGCAACGCGAATGCCGGGGAAT
CCAAGCACAGGGAGGTAAAACAATCTGCGCCATCTGCCAGCGGTGTCGCG
AAAGGTGCGGTCGGCAACGCGAATGCCGGGGAATCCAAGCACAGGGAGGT
AAAACAATCTGCGCCATCTGCCAGCGGT