|
|
Homology
BLAST of mRNA_H-canaliculatus_F_contig10129.154.1 vs. uniprot
Match: A0A6H5K5R8_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5R8_9PHAE) HSP 1 Score: 101 bits (251), Expect = 1.140e-22 Identity = 52/118 (44.07%), Postives = 76/118 (64.41%), Query Frame = 2 Query: 26 SSLPYCIRAVRLVVVYNRDYRTKYMRFVKRKPMMYTSAAISAAIAVRASLFYGNKPSYYSSFSGGHQCFYWNDVLLSVSLLGVLGVPLVLLGAQLVQVNDAFKVGEEIVQVAVGCTLC 379
++ PY IRAVRLVV YNR YR KY RFVKR + A + +RA +F+G P++YSS +CFYW+D++L ++L G P+ L ++ +V+DAFK+ EE+ V +GC+ C
Sbjct: 3 ATTPYVIRAVRLVVAYNRKYRLKYARFVKRNYALGFWAVGCIGLTIRAGIFFGTDPAHYSSDM--RECFYWDDIMLMGAVLLFGGAPMSCLAIRISRVHDAFKLREELCFVFIGCSCC 118
BLAST of mRNA_H-canaliculatus_F_contig10129.154.1 vs. uniprot
Match: D8LQY9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQY9_ECTSI) HSP 1 Score: 95.1 bits (235), Expect = 1.830e-21 Identity = 50/110 (45.45%), Postives = 72/110 (65.45%), Query Frame = 2 Query: 44 IRAVRLVVVYNRDYRTKYMRFVKRKPMMYTSAAISAAIAVRASLFYGNKPSYYSSFSGGHQCFYWNDVLLSVSLLGVLGVPLVLLGAQLVQVNDAFKVGEEIVQVAVGCT 373
IRA+RLV+ YNR YR KY +FVKRK + A IS + VRA LF+G P++YSS +CFYW+D+ + L G P+ LL ++ +VNDAF++ EE+ + +GC+
Sbjct: 2 IRAIRLVIAYNRKYRLKYAKFVKRKRALGFWAVISIGLTVRAGLFFGTDPAHYSSDM--RECFYWDDIFVVGIGLIFGGAPVSLLVIRISRVNDAFQLREELCRTIMGCS 109
BLAST of mRNA_H-canaliculatus_F_contig10129.154.1 vs. uniprot
Match: D8LQX1_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQX1_ECTSI) HSP 1 Score: 63.9 bits (154), Expect = 3.100e-9 Identity = 30/59 (50.85%), Postives = 39/59 (66.10%), Query Frame = 2 Query: 32 LPYCIRAVRLVVVYNRDYRTKYMRFVKRKPMMYTSAAISAAIAVRASLFYGNKPSYYSS 208
+PY IRAVRLV+ YNR YR KY +FVKRK + +RA LF+G+ P++YSS
Sbjct: 1 MPYFIRAVRLVIAYNRKYRLKYAKFVKRKHATGVLVLTFIVLTIRAGLFFGDDPAHYSS 59
BLAST of mRNA_H-canaliculatus_F_contig10129.154.1 vs. uniprot
Match: A0A6H5KE83_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE83_9PHAE) HSP 1 Score: 60.8 bits (146), Expect = 6.670e-8 Identity = 29/60 (48.33%), Postives = 38/60 (63.33%), Query Frame = 2 Query: 26 SSLPYCIRAVRLVVVYNRDYRTKYMRFVKRKPMMYTSAAISAAIAVRASLFYGNKPSYYS 205
++ PY IRAVRLVV YNR R KY RFVKR + A + +RA +F+G P++YS
Sbjct: 3 ATTPYVIRAVRLVVAYNRKCRLKYARFVKRNHALGFGAVACIGLTIRAGIFFGTDPAHYS 62
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | signal anchor |
| Exons | 4 |
| Model size | 470 |
| Cds size | 306 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928642.120236-UTR-H-canaliculatus_F_contig10129:2728..2806 | 1622928642.120236-UTR-H-canaliculatus_F_contig10129:2728..2806 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10129 2729..2806 + |
| 1696845509.2649662-UTR-H-canaliculatus_F_contig10129:2728..2806 | 1696845509.2649662-UTR-H-canaliculatus_F_contig10129:2728..2806 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10129 2729..2806 + |
| 1622928642.2116475-UTR-H-canaliculatus_F_contig10129:3067..3086 | 1622928642.2116475-UTR-H-canaliculatus_F_contig10129:3067..3086 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10129 3068..3086 + |
| 1696845509.27513-UTR-H-canaliculatus_F_contig10129:3067..3086 | 1696845509.27513-UTR-H-canaliculatus_F_contig10129:3067..3086 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10129 3068..3086 + |
| 1622928642.2644086-UTR-H-canaliculatus_F_contig10129:4701..4768 | 1622928642.2644086-UTR-H-canaliculatus_F_contig10129:4701..4768 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10129 4702..4768 + |
| 1696845509.310961-UTR-H-canaliculatus_F_contig10129:4701..4768 | 1696845509.310961-UTR-H-canaliculatus_F_contig10129:4701..4768 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10129 4702..4768 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928642.224003-CDS-H-canaliculatus_F_contig10129:3086..3196 | 1622928642.224003-CDS-H-canaliculatus_F_contig10129:3086..3196 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10129 3087..3196 + |
| 1696845509.2842567-CDS-H-canaliculatus_F_contig10129:3086..3196 | 1696845509.2842567-CDS-H-canaliculatus_F_contig10129:3086..3196 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10129 3087..3196 + |
| 1622928642.2372348-CDS-H-canaliculatus_F_contig10129:3518..3694 | 1622928642.2372348-CDS-H-canaliculatus_F_contig10129:3518..3694 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10129 3519..3694 + |
| 1696845509.2930894-CDS-H-canaliculatus_F_contig10129:3518..3694 | 1696845509.2930894-CDS-H-canaliculatus_F_contig10129:3518..3694 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10129 3519..3694 + |
| 1622928642.2497957-CDS-H-canaliculatus_F_contig10129:4681..4701 | 1622928642.2497957-CDS-H-canaliculatus_F_contig10129:4681..4701 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10129 4682..4701 + |
| 1696845509.3026862-CDS-H-canaliculatus_F_contig10129:4681..4701 | 1696845509.3026862-CDS-H-canaliculatus_F_contig10129:4681..4701 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10129 4682..4701 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig10129.154.1 >prot_H-canaliculatus_F_contig10129.154.1 ID=prot_H-canaliculatus_F_contig10129.154.1|Name=mRNA_H-canaliculatus_F_contig10129.154.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=102bp
MRFVKRKPMMYTSAAISAAIAVRASLFYGNKPSYYSSFSGGHQCFYWNDV
LLSVSLLGVLGVPLVLLGAQLVQVNDAFKVGEEIVQVAVGCTLCQCCWSR
W* back to topmRNA from alignment at H-canaliculatus_F_contig10129:2729..4768+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-canaliculatus_F_contig10129.154.1 ID=mRNA_H-canaliculatus_F_contig10129.154.1|Name=mRNA_H-canaliculatus_F_contig10129.154.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2040bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10129:2729..4768+ (Hapterophycus canaliculatus Oshoro5f female)
CTCGCTCTCAACAGCGTACGTGCTTTCGTCCCTCCCTTACTGCATCCGGG
CTGTCCGCCTGGTTGTGGTGTACAACAGGTGCATCGTTGTCGTCGTCGTT
ACTTTTATTGTTGTTTCTGTTGCCCACCCAAGCCCACCGCCAAGAATGCA
CCCCCTTCAAGTAACCCTTCTTCTGGTAGTGCGCCGTTTGGTGCTCACTT
GGTGCGAGAGACGTACATACCCCGAGTTCAGCAGTTAATCTAGCAACACG
TGTACGCCAAGCAAGGGGGAGAACATGTATTGTCACGCAGTTATCTGATT
GATCCAAAAGCCTCTACGCCTTGTGTTTCCACGTTGCAGAGATTACCGGA
CCAAGTACATGCGTTTCGTCAAGCGAAAGCCCATGATGTACACTTCGGCG
GCGATATCTGCAGCGATTGCCGTTCGCGCGTCTCTGTTCTACGGTAACAA
GCCCTCCTACTATTCAAGGTACTACGATGACAAGACCATGAGAAGACGTA
CTTGTGGCGGCAAGTCGTGTCGTCGAGACGAAAATAGACAAACCTGTAGG
CAAACAGGCCGTATGACGTCCCCGACGGCCCTGGTTCCACCCTTCACCTG
ATAACCCACAACATGTAGGCCGCCGAACCGCCGACCGAGCAATTAAGTGC
AAGTCTTCCGAAGGAAGCACGAATCCGCTGTCTAAGCTTCTGGTCACATG
TTCGTTTGAGGACTGACGCGGAACCACAGCAAACCCGCGTCACCGATTGC
AACTCGGACCCTCGACCCCGCCGCCCGCTTCGATCGTTAGTTTCAGCGGC
GGACACCAGTGCTTCTATTGGAACGACGTTCTTCTTTCAGTATCTCTGCT
TGGGGTTTTGGGGGTGCCCCTCGTTTTACTCGGCGCCCAACTGGTCCAAG
TTAACGACGCCTTCAAAGTTGGCGAAGAGATCGTGCAAGTGGCCGTCGGC
TGTACCCTTTGTCAATGTGAGTAGGAGTAAACGACGGCCAGCACCCAAAC
CACGCGGGTGGGATTTGAAGATTGTAGAGATCTCGCACGTTTCGCTTTTA
AATTCGTTCCCCTTTTCTTGGCATCTTAAGAGCCAGCGCCAGGCGTACAA
CGGAAAGGCGAAGGGAACGGAACATCCTTCGAGGACACAAGTCGCGTTGC
TTTCCTCGTGTGACACGGCCACGTTGCTTAGGCCCTAGATCGCTCTTTTT
GCCACGAATTGTAGAAACGTTTCCCATATGCTCGTTCTCCAACTTTGGAG
AGCTGCACTGACGGCAGTTTCCCCGCTGTATCGTCGTCGTCCGTGACGGC
TGTTCTTCGGCACGTATTTCATCCTGCCCTGTCTACCCTTGGTTGTCACG
ACCCTCGATTATTTGTCATCCAGGGATCATCACAGCTATTCAGATACTCG
TGATTTTCAAGCTCTTACCAGACTCACGCCTAGTTCATGTCGTGGGCGAG
ATTTTGGTGCTCCTGTGGGGGATGATTGCCGGGATATCGGGGTGAGGCTA
GCTGATTTCAGGTCTCAGATATAGCCTGAAATCCGTGGGCGCATTCAGGC
TGTGTGGTATCACACGTCGTTCATTCCCGCGTGTCCACTTCCTCTCTCAC
GTCCTATCTTGGTCGAGAAGAACGCTAGGAGGGTCAGTGAAATTTCTTCA
AATCACAAAATTTTAGAGGTTCGTCGGTCCAAGCACAGTCCTGATTGCGT
CGCCATAGTGTTTGTTGGTTTCAGGCGCCGCGGCGGGTTGCTTGCTTGTA
TCGTCCGGCCTCCACGCCGTCCTGTGTAGAGCGCTTGCGTATAACACAAA
TGGCTTCACTCCGGACCTCACCCGTCCACGGTAGAACTGAAGCCTAGTTA
TTGTAGACGAGAGTATTATTTCACCTGCCTGTCAGTACAACGTCAAACAG
CTCCTGGGTTTCTATCCTGTTACCTGCGTATGAAATCGGATCACGCGTCG
CAGGTTGTTGGTCCCGCTGGTAAGAATACACCGCCAAAACCATTGGAGTT
GGTTTGCGTACGCCGTCTCTCCCGCCGAACACGATGACCC back to topCoding sequence (CDS) from alignment at H-canaliculatus_F_contig10129:2729..4768+ >mRNA_H-canaliculatus_F_contig10129.154.1 ID=mRNA_H-canaliculatus_F_contig10129.154.1|Name=mRNA_H-canaliculatus_F_contig10129.154.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=612bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10129:2729..4768+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCGTTTCGTCAAGCGAAAGCCCATGATGTACACTTCGGCGGCGATATC
TGCAGCGATTGCCGTTCGCGCGTCTCTGTTCTACGGTAACAAGCCCTCCT
ACTATTCAAGATGCGTTTCGTCAAGCGAAAGCCCATGATGTACACTTCGG
CGGCGATATCTGCAGCGATTGCCGTTCGCGCGTCTCTGTTCTACGGTAAC
AAGCCCTCCTACTATTCAAGTTTCAGCGGCGGACACCAGTGCTTCTATTG
GAACGACGTTCTTCTTTCAGTATCTCTGCTTGGGGTTTTGGGGGTGCCCC
TCGTTTTACTCGGCGCCCAACTGGTCCAAGTTAACGACGCCTTCAAAGTT
GGCGAAGAGATCGTGCAAGTGGCCGTCGGCTGTACCCTTTGTCAATTTTC
AGCGGCGGACACCAGTGCTTCTATTGGAACGACGTTCTTCTTTCAGTATC
TCTGCTTGGGGTTTTGGGGGTGCCCCTCGTTTTACTCGGCGCCCAACTGG
TCCAAGTTAACGACGCCTTCAAAGTTGGCGAAGAGATCGTGCAAGTGGCC
GTCGGCTGTACCCTTTGTCAATGTTGTTGGTCCCGCTGGTAAGTTGTTGG
TCCCGCTGGTAA back to top
|