mRNA_H-canaliculatus_F_contig10129.154.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig10129.154.1 vs. uniprot
Match: A0A6H5K5R8_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5R8_9PHAE) HSP 1 Score: 101 bits (251), Expect = 1.140e-22 Identity = 52/118 (44.07%), Postives = 76/118 (64.41%), Query Frame = 2 Query: 26 SSLPYCIRAVRLVVVYNRDYRTKYMRFVKRKPMMYTSAAISAAIAVRASLFYGNKPSYYSSFSGGHQCFYWNDVLLSVSLLGVLGVPLVLLGAQLVQVNDAFKVGEEIVQVAVGCTLC 379
++ PY IRAVRLVV YNR YR KY RFVKR + A + +RA +F+G P++YSS +CFYW+D++L ++L G P+ L ++ +V+DAFK+ EE+ V +GC+ C
Sbjct: 3 ATTPYVIRAVRLVVAYNRKYRLKYARFVKRNYALGFWAVGCIGLTIRAGIFFGTDPAHYSSDM--RECFYWDDIMLMGAVLLFGGAPMSCLAIRISRVHDAFKLREELCFVFIGCSCC 118
BLAST of mRNA_H-canaliculatus_F_contig10129.154.1 vs. uniprot
Match: D8LQY9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQY9_ECTSI) HSP 1 Score: 95.1 bits (235), Expect = 1.830e-21 Identity = 50/110 (45.45%), Postives = 72/110 (65.45%), Query Frame = 2 Query: 44 IRAVRLVVVYNRDYRTKYMRFVKRKPMMYTSAAISAAIAVRASLFYGNKPSYYSSFSGGHQCFYWNDVLLSVSLLGVLGVPLVLLGAQLVQVNDAFKVGEEIVQVAVGCT 373
IRA+RLV+ YNR YR KY +FVKRK + A IS + VRA LF+G P++YSS +CFYW+D+ + L G P+ LL ++ +VNDAF++ EE+ + +GC+
Sbjct: 2 IRAIRLVIAYNRKYRLKYAKFVKRKRALGFWAVISIGLTVRAGLFFGTDPAHYSSDM--RECFYWDDIFVVGIGLIFGGAPVSLLVIRISRVNDAFQLREELCRTIMGCS 109
BLAST of mRNA_H-canaliculatus_F_contig10129.154.1 vs. uniprot
Match: D8LQX1_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQX1_ECTSI) HSP 1 Score: 63.9 bits (154), Expect = 3.100e-9 Identity = 30/59 (50.85%), Postives = 39/59 (66.10%), Query Frame = 2 Query: 32 LPYCIRAVRLVVVYNRDYRTKYMRFVKRKPMMYTSAAISAAIAVRASLFYGNKPSYYSS 208
+PY IRAVRLV+ YNR YR KY +FVKRK + +RA LF+G+ P++YSS
Sbjct: 1 MPYFIRAVRLVIAYNRKYRLKYAKFVKRKHATGVLVLTFIVLTIRAGLFFGDDPAHYSS 59
BLAST of mRNA_H-canaliculatus_F_contig10129.154.1 vs. uniprot
Match: A0A6H5KE83_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE83_9PHAE) HSP 1 Score: 60.8 bits (146), Expect = 6.670e-8 Identity = 29/60 (48.33%), Postives = 38/60 (63.33%), Query Frame = 2 Query: 26 SSLPYCIRAVRLVVVYNRDYRTKYMRFVKRKPMMYTSAAISAAIAVRASLFYGNKPSYYS 205
++ PY IRAVRLVV YNR R KY RFVKR + A + +RA +F+G P++YS
Sbjct: 3 ATTPYVIRAVRLVVAYNRKCRLKYARFVKRNHALGFGAVACIGLTIRAGIFFGTDPAHYS 62 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10129.154.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 4 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig10129.154.1 >prot_H-canaliculatus_F_contig10129.154.1 ID=prot_H-canaliculatus_F_contig10129.154.1|Name=mRNA_H-canaliculatus_F_contig10129.154.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=102bp MRFVKRKPMMYTSAAISAAIAVRASLFYGNKPSYYSSFSGGHQCFYWNDVback to top mRNA from alignment at H-canaliculatus_F_contig10129:2729..4768+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig10129.154.1 ID=mRNA_H-canaliculatus_F_contig10129.154.1|Name=mRNA_H-canaliculatus_F_contig10129.154.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2040bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10129:2729..4768+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10129:2729..4768+ >mRNA_H-canaliculatus_F_contig10129.154.1 ID=mRNA_H-canaliculatus_F_contig10129.154.1|Name=mRNA_H-canaliculatus_F_contig10129.154.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=612bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10129:2729..4768+ (Hapterophycus canaliculatus Oshoro5f female)back to top |