Homology
BLAST of mRNA_H-canaliculatus_F_contig10099.124.1 vs. uniprot
Match: D7FIE4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIE4_ECTSI) HSP 1 Score: 143 bits (360), Expect = 4.230e-34 Identity = 89/161 (55.28%), Postives = 100/161 (62.11%), Query Frame = 1 Query: 1 ARLVFVVSDADLVAYRRKLWLASLAMATALAAVLSVLVVECFVDRAWEARAGVVGGGXXXXXXXXXXXAFLSGAEGEGMAAATGAAVRGGGEEWARWLGDGGIAGGVSFRRHDCDTEWCYSRSLLGLWEWLLLFLEAGFCIALRHDLAPATGGIGVESFVL 483
ARLVFVVSD DLVAY+RKLWLAS A A AVLSVL+VEC W + GG AF+ G + + V G +E A VS R DCDTEWCYSRSLLGLWE+LLL +EAGFC+ALRHDLAPATGG+GVESFVL
Sbjct: 190 ARLVFVVSDGDLVAYKRKLWLASTAAIVAAVAVLSVLIVECVEGGTWNMGWSIRGGAG----------AFVGGG-------GSSSGVGGFDDETAAVGDQDRWEDNVSSSR-DCDTEWCYSRSLLGLWEYLLLAVEAGFCMALRHDLAPATGGVGVESFVL 332
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | signal peptide |
| Exons | 1 |
| Model size | 2053 |
| Cds size | 411 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928637.4901893-UTR-H-canaliculatus_F_contig10099:181..256 | 1622928637.4901893-UTR-H-canaliculatus_F_contig10099:181..256 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10099 182..256 + |
| 1696845506.895321-UTR-H-canaliculatus_F_contig10099:181..256 | 1696845506.895321-UTR-H-canaliculatus_F_contig10099:181..256 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10099 182..256 + |
| 1622928637.523397-UTR-H-canaliculatus_F_contig10099:667..2234 | 1622928637.523397-UTR-H-canaliculatus_F_contig10099:667..2234 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10099 668..2234 + |
| 1696845506.9131725-UTR-H-canaliculatus_F_contig10099:667..2234 | 1696845506.9131725-UTR-H-canaliculatus_F_contig10099:667..2234 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10099 668..2234 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928637.506688-CDS-H-canaliculatus_F_contig10099:256..667 | 1622928637.506688-CDS-H-canaliculatus_F_contig10099:256..667 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10099 257..667 + |
| 1696845506.9035733-CDS-H-canaliculatus_F_contig10099:256..667 | 1696845506.9035733-CDS-H-canaliculatus_F_contig10099:256..667 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10099 257..667 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig10099.124.1 >prot_H-canaliculatus_F_contig10099.124.1 ID=prot_H-canaliculatus_F_contig10099.124.1|Name=mRNA_H-canaliculatus_F_contig10099.124.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=137bp
MATALAAVLSVLVVECFVDRAWEARAGVVGGGSGSGSGSLSASAFLSGAE
GEGMAAATGAAVRGGGEEWARWLGDGGIAGGVSFRRHDCDTEWCYSRSLL
GLWEWLLLFLEAGFCIALRHDLAPATGGIGVESFVL* back to topmRNA from alignment at H-canaliculatus_F_contig10099:182..2234+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-canaliculatus_F_contig10099.124.1 ID=mRNA_H-canaliculatus_F_contig10099.124.1|Name=mRNA_H-canaliculatus_F_contig10099.124.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2053bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10099:182..2234+ (Hapterophycus canaliculatus Oshoro5f female)
GCAAGGTTGGTTTTCGTTGTGTCCGATGCCGATCTCGTCGCCTACCGTCG
AAAGTTGTGGTTGGCGTCGCTGGCGATGGCCACGGCCTTGGCGGCCGTTC
TGTCGGTGCTCGTCGTGGAGTGCTTCGTGGACCGCGCGTGGGAAGCGAGA
GCGGGGGTCGTCGGCGGTGGTAGCGGGAGCGGGAGCGGAAGCTTGTCGGC
TTCCGCCTTTTTGTCCGGAGCTGAGGGGGAAGGGATGGCGGCGGCGACGG
GAGCCGCGGTGCGAGGCGGGGGAGAGGAGTGGGCGCGGTGGTTGGGAGAT
GGTGGCATCGCGGGTGGCGTTAGTTTTAGGAGGCACGACTGCGACACCGA
GTGGTGCTACTCGCGCAGCCTGCTGGGGTTGTGGGAGTGGCTGCTGCTCT
TCCTCGAGGCTGGATTTTGCATCGCGCTGAGGCACGACCTGGCTCCGGCT
ACCGGCGGGATCGGGGTGGAGAGCTTCGTGCTCTGACCTTCTCGCCCGCT
TGCCTGCCTGCCTGCCTGCCTGCCTCCTTTCCTCCTCATTTTAGGAGCTT
GATGTGTCTTGTAAGGCAGGTCGTTGTGTACTTGTTCGCCGCCACGCGGC
ATTCTCGGCGTTCGATGGTCGGTGTGGTTCGTTTCTGCACTCAAAATGTT
TTCGTTTTTTTTCTCGTTCAATCTTTTCGTTGTTTCTTGTGATTCGTACC
AGTATGCGTGCGGGCGAAACGAGACGAGGCCCATGGGTGCAGTGCGGTGC
GTCAGAGCAAGTTTTTAGAAGCCGTCCGGTAATTTTGCGTGAGCCAGGAG
ATATCCAACCTTGCGAAGCAGATCTCCGGGATTCATCGTGCACCTGGCGC
TCCTCTGGGAGTCTCCTCGAAGCATAGCAGAAGCCACCCTTGCTCATGAT
TTCCTACTCGTCGCTTGCGACCTCGCTGTCGGGGGTAACGACGTTCTCGA
GGTCGAGAATCACACCCTTGAGTCGCGCCCTTGGTACCACCGCCTTCGTT
TCCCCGGGACAATTAATCCCTTGCTCGTGGGGTAAGCTGAGGCGGACCGG
TTCTGTCATTTTTTTCTAGCGGCTCGTACTGGCCGGATGCTCGGACGAGG
CCGTACCGGTTGTCTCTCGCGCTCCGCGACTCTCCGAGCGCGAGTCGCGA
CACCCCCGATCTGACAACCGGCAAGCGCGGACCTGGGCCCTGCCTTGTCA
CGCCGGCAAACTTTGGGGGGCTGCCGAACGATGTGTACAGATCCGGGGGG
TTCAAATTATCATCTTTTTGCGGTCTCGAGCGCGTTTGCGTCCATGTGTT
TGTGCGGCAAAAAACGACCTGTCTTGGTGTCCGGTGATAACCCGCTGACC
GGCGCAAGAAGAGTTACGCTTTCCATAGCTTTTTTGGCGCGGACGCTTTA
TTGTTTTCCTATTGCTTCTCCGTCGACTTTGGGGCGACGGCAGCAGCAGC
GCTGACGCCAGGAGCATTCTTCCTGTTCGTCCTACTGTAGGTGTAACTTG
CGTGCGTCAGCGGTAGCCCAGACGTTGAGTTTTTTCGAGTCCAAGATGGA
TCGTTTGCGTTGTGTGTCGTGGTGCAGATTCAATCCAGTCTCAGTAGCAT
GACGGGACATTTGTTCGAGGAGAAAGATGCCACGGGGGCTCCGGGTCGAC
AGCAAAAGTATGCAGTCTAGATTGCAGCACGAAATGTTATCTCGAGGACC
CGGTTTCGGGTCAAGGATTCAAAGTTCGAAGCGATTTTCGGGGTCGTGTT
AAGTAGGGTGTGTGCCCTACTCGGGGTAGGTCCAGATTTTAGAAAGCAAA
TACTGTACGACGGGTATTGCGAAAGTTGTGGCCACGTCCTGGAGCAGTGA
AATCCCTGCCGGGTGATTCCCCCGGCTCTCCGGTATAGTCCATCCGTCAG
CCTACCCCAAGCGGGGCATGGTTGCCCCCACCCCCAGGTATTATGTCTGC
CGACTGTCTCCGGGTAGGAAGAAAGGGGGGTTTGACCTGTGGGTCTCTGG
GTTCGATAAACAAAGACACGAAAGATGCAAGCGTTGCAGCCCCCCAGTAA
ACC back to topCoding sequence (CDS) from alignment at H-canaliculatus_F_contig10099:182..2234+ >mRNA_H-canaliculatus_F_contig10099.124.1 ID=mRNA_H-canaliculatus_F_contig10099.124.1|Name=mRNA_H-canaliculatus_F_contig10099.124.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=822bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10099:182..2234+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGCCACGGCCTTGGCGGCCGTTCTGTCGGTGCTCGTCGTGGAGTGCTT
CGTGGACCGCGCGTGGGAAGCGAGAGCGGGGGTCGTCGGCGGTGGTAGCG
GGAGCGGGAGCGGAAGCTTGTCGGCTTCCGCCTTTTTGTCCGGAGCTGAG
GGGGAAGGGATGGCGGCGGCGACGGGAGCCGCGGTGCGAGGCGGGGGAGA
GGAGTGGGCGCGGTGGTTGGGAGATGGTGGCATCGCGGGTGGCGTTAGTT
TTAGGAGGCACGACTGCGACACCGAGTGGTGCTACTCGCGCAGCCTGCTG
GGGTTGTGGGAGTGGCTGCTGCTCTTCCTCGAGGCTGGATTTTGCATCGC
GCTGAGGCACGACCTGGCTCCGGCTACCGGCGGGATCGGGGTGGAGAGCT
TCGTGCTCTGAATGGCCACGGCCTTGGCGGCCGTTCTGTCGGTGCTCGTC
GTGGAGTGCTTCGTGGACCGCGCGTGGGAAGCGAGAGCGGGGGTCGTCGG
CGGTGGTAGCGGGAGCGGGAGCGGAAGCTTGTCGGCTTCCGCCTTTTTGT
CCGGAGCTGAGGGGGAAGGGATGGCGGCGGCGACGGGAGCCGCGGTGCGA
GGCGGGGGAGAGGAGTGGGCGCGGTGGTTGGGAGATGGTGGCATCGCGGG
TGGCGTTAGTTTTAGGAGGCACGACTGCGACACCGAGTGGTGCTACTCGC
GCAGCCTGCTGGGGTTGTGGGAGTGGCTGCTGCTCTTCCTCGAGGCTGGA
TTTTGCATCGCGCTGAGGCACGACCTGGCTCCGGCTACCGGCGGGATCGG
GGTGGAGAGCTTCGTGCTCTGA back to top
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