mRNA_H-canaliculatus_F_contig1004.74.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Homology

BLAST of mRNA_H-canaliculatus_F_contig1004.74.1 vs. uniprot
Match: A0A6H5JUU1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUU1_9PHAE)

HSP 1 Score: 170 bits (430), Expect = 1.640e-45
Identity = 81/116 (69.83%), Postives = 94/116 (81.03%), Query Frame = 2

Query:  266 QGFSERQNIMAAYV*DQFAKVYFTPQNLGGGCNLACPAAHLALTRLIDKHDDSSRLTGRPIIQHAHWQVDICVSKNKNNLFVGYAGSLVVANAIGVVEINFMQVGHTHTKIDQVFS 613
            +G+SERQ IMA ++  QF +VYFTPQ LGGGCNLAC AAHLA+TR+IDK+ DS       IIQHAHWQVD CVS+NKNN F+GYAG LV A+ + VVEI+FM VGHTHTKIDQVFS
Sbjct:  156 RGYSERQKIMAVHIEGQFVEVYFTPQYLGGGCNLACTAAHLAITRIIDKYHDSPPHPSGCIIQHAHWQVDNCVSENKNNFFLGYAGLLVAADVVRVVEIHFMMVGHTHTKIDQVFS 271

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BLAST of mRNA_H-canaliculatus_F_contig1004.74.1 vs. uniprot
Match: A0A6H5KA02_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA02_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 2.740e-22
Identity = 56/115 (48.70%), Postives = 67/115 (58.26%), Query Frame = 2

Query:  269 GFSERQNIMAAYV*DQFAKVYFTPQNLGGGCNLACPAAHLALTRLIDKHDDSSRLTGRPIIQHAHWQVDICVSKNKNNLFVGYAGSLVVANAIGVVEINFMQVGHTHTKIDQVFS 613
            GFSERQ +MA      F  V+F PQ  GGG NL C A  LAL RL        +   R  I+  H Q+D CV +NKNN+ + + G LV A  IG  E+ F+ VGHTH KIDQVFS
Sbjct:   93 GFSERQKVMAVQAEGAFVDVHFVPQTTGGGSNLVCTALWLALKRLSAMGTKPGQ---RFYIKRLHLQLDNCVGENKNNIVLAFIGGLVAAGVIGSAEVCFLIVGHTHIKIDQVFS 204

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BLAST of mRNA_H-canaliculatus_F_contig1004.74.1 vs. uniprot
Match: A0A6H5JCW3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCW3_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 7.260e-20
Identity = 45/67 (67.16%), Postives = 51/67 (76.12%), Query Frame = 2

Query:  413 HDDSSRLTGRPIIQHAHWQVDICVSKNKNNLFVGYAGSLVVANAIGVVEINFMQVGHTHTKIDQVFS 613
            HD  SR     +IQHAHWQVD C S+NKNN F+G+AG LV A+ I VVEINFM VGHTH KIDQ+FS
Sbjct:    2 HDKGSRHPSGYLIQHAHWQVDNCASENKNNFFLGFAGLLVAASVIRVVEINFMMVGHTHMKIDQIFS 68

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BLAST of mRNA_H-canaliculatus_F_contig1004.74.1 vs. uniprot
Match: A0A6H5KUA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUA0_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 2.530e-14
Identity = 36/58 (62.07%), Postives = 41/58 (70.69%), Query Frame = 2

Query:  440 RPIIQHAHWQVDICVSKNKNNLFVGYAGSLVVANAIGVVEINFMQVGHTHTKIDQVFS 613
            RP I     QVD CVS+NKN++ +GY GSLV    IG VE+ FM VGHTH KIDQVFS
Sbjct:    8 RPYIYRFTIQVDNCVSENKNHIVIGYLGSLVAQGIIGEVEVQFMPVGHTHIKIDQVFS 65

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BLAST of mRNA_H-canaliculatus_F_contig1004.74.1 vs. uniprot
Match: A0A6H5KN27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN27_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 1.290e-12
Identity = 41/86 (47.67%), Postives = 50/86 (58.14%), Query Frame = 2

Query:  356 GCNLACPAAHLALTRLIDKHDDSSRLTGRPIIQHAHWQVDICVSKNKNNLFVGYAGSLVVANAIGVVEINFMQVGHTHTKIDQVFS 613
            G NL C A  LAL RL        +   R  I+  H Q+D CV +NKNN+ + + G LV A  IG  E+ F+ VGHTH KIDQVFS
Sbjct:   10 GSNLVCTALWLALKRLSAMWTKPGQ---RFYIKRLHLQLDNCVGENKNNIVLAFIGGLVAAGVIGSAEVCFLIVGHTHIKIDQVFS 92

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BLAST of mRNA_H-canaliculatus_F_contig1004.74.1 vs. uniprot
Match: A0A6H5KAY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAY2_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 4.870e-12
Identity = 41/86 (47.67%), Postives = 50/86 (58.14%), Query Frame = 2

Query:  356 GCNLACPAAHLALTRLIDKHDDSSRLTGRPIIQHAHWQVDICVSKNKNNLFVGYAGSLVVANAIGVVEINFMQVGHTHTKIDQVFS 613
            G NL C A  LAL RL        +   R  I+  H Q+D CV +NKNN+ + + G LV A  IG  E+ F+ VGHTH KIDQVFS
Sbjct:   10 GSNLVCTALWLALKRLSAMWTKPGQ---RFYIKRLHLQLDNCVGENKNNIVLAFIGGLVAAGVIGSAEVCFLIVGHTHIKIDQVFS 92

[Close]

BLAST of mRNA_H-canaliculatus_F_contig1004.74.1 vs. uniprot
Match: A0A6H5JAR9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAR9_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 1.030e-10
Identity = 40/90 (44.44%), Postives = 51/90 (56.67%), Query Frame = 2

Query:  356 GCNLACPAAHLALTRLIDKHDDSSRLTGRP----IIQHAHWQVDICVSKNKNNLFVGYAGSLVVANAIGVVEINFMQVGHTHTKIDQVFS 613
            G NL C    LAL RL       S +  +P     I+  H Q+D CV +NKNN+ + + G LV A  IG  E+ F+ +GHTH KIDQVFS
Sbjct:   10 GSNLECTTLWLALKRL-------SAMWTKPGERFHIKRRHLQLDNCVGENKNNIVMAFIGGLVAAGVIGFAEVCFLILGHTHIKIDQVFS 92

[Close]

BLAST of mRNA_H-canaliculatus_F_contig1004.74.1 vs. uniprot
Match: A0A6H5JXN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXN7_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 2.950e-7
Identity = 28/56 (50.00%), Postives = 36/56 (64.29%), Query Frame = 2

Query:  446 IIQHAHWQVDICVSKNKNNLFVGYAGSLVVANAIGVVEINFMQVGHTHTKIDQVFS 613
            ++  A    D CV +NKNN+ + + G LV A  IG  E+ F+ VGHTH KIDQVFS
Sbjct:  204 VLHQASPPSDNCVGENKNNIVLAFIGGLVAAGVIGSAEVCFLIVGHTHIKIDQVFS 259

The following BLAST results are available for this feature:

BLAST of mRNA_H-canaliculatus_F_contig1004.74.1 vs. uniprot

BLAST of mRNA_H-canaliculatus_F_contig1004.74.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 8

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description
A0A6H5JUU1_9PHAE	1.640e-45	69.83	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KA02_9PHAE	2.740e-22	48.70	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JCW3_9PHAE	7.260e-20	67.16	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KUA0_9PHAE	2.530e-14	62.07	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KN27_9PHAE	1.290e-12	47.67	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KAY2_9PHAE	4.870e-12	47.67	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JAR9_9PHAE	1.030e-10	44.44	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JXN7_9PHAE	2.950e-7	50.00	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-canaliculatus_F_contig1004	contig	H-canaliculatus_F_contig1004:28969..31220 +

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-canaliculatus_F_contig1004.74.1	prot_H-canaliculatus_F_contig1004.74.1	Hapterophycus canaliculatus Oshoro5f female	polypeptide	H-canaliculatus_F_contig1004 28969..31100 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622928632.2192595-CDS-H-canaliculatus_F_contig1004:28968..29236	1622928632.2192595-CDS-H-canaliculatus_F_contig1004:28968..29236	Hapterophycus canaliculatus Oshoro5f female	CDS	H-canaliculatus_F_contig1004 28969..29236 +
1696845503.8802114-CDS-H-canaliculatus_F_contig1004:28968..29236	1696845503.8802114-CDS-H-canaliculatus_F_contig1004:28968..29236	Hapterophycus canaliculatus Oshoro5f female	CDS	H-canaliculatus_F_contig1004 28969..29236 +
1622928632.2308013-CDS-H-canaliculatus_F_contig1004:30204..30292	1622928632.2308013-CDS-H-canaliculatus_F_contig1004:30204..30292	Hapterophycus canaliculatus Oshoro5f female	CDS	H-canaliculatus_F_contig1004 30205..30292 +
1696845503.8939116-CDS-H-canaliculatus_F_contig1004:30204..30292	1696845503.8939116-CDS-H-canaliculatus_F_contig1004:30204..30292	Hapterophycus canaliculatus Oshoro5f female	CDS	H-canaliculatus_F_contig1004 30205..30292 +
1622928632.2593966-CDS-H-canaliculatus_F_contig1004:30708..30821	1622928632.2593966-CDS-H-canaliculatus_F_contig1004:30708..30821	Hapterophycus canaliculatus Oshoro5f female	CDS	H-canaliculatus_F_contig1004 30709..30821 +
1696845503.9081702-CDS-H-canaliculatus_F_contig1004:30708..30821	1696845503.9081702-CDS-H-canaliculatus_F_contig1004:30708..30821	Hapterophycus canaliculatus Oshoro5f female	CDS	H-canaliculatus_F_contig1004 30709..30821 +
1622928632.273082-CDS-H-canaliculatus_F_contig1004:31074..31100	1622928632.273082-CDS-H-canaliculatus_F_contig1004:31074..31100	Hapterophycus canaliculatus Oshoro5f female	CDS	H-canaliculatus_F_contig1004 31075..31100 +
1696845503.9229944-CDS-H-canaliculatus_F_contig1004:31074..31100	1696845503.9229944-CDS-H-canaliculatus_F_contig1004:31074..31100	Hapterophycus canaliculatus Oshoro5f female	CDS	H-canaliculatus_F_contig1004 31075..31100 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622928632.2848039-UTR-H-canaliculatus_F_contig1004:31100..31220	1622928632.2848039-UTR-H-canaliculatus_F_contig1004:31100..31220	Hapterophycus canaliculatus Oshoro5f female	UTR	H-canaliculatus_F_contig1004 31101..31220 +
1696845503.9312067-UTR-H-canaliculatus_F_contig1004:31100..31220	1696845503.9312067-UTR-H-canaliculatus_F_contig1004:31100..31220	Hapterophycus canaliculatus Oshoro5f female	UTR	H-canaliculatus_F_contig1004 31101..31220 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-canaliculatus_F_contig1004:28969..31220+
coding sequence from alignment at H-canaliculatus_F_contig1004:28969..31220+

protein sequence of mRNA_H-canaliculatus_F_contig1004.74.1

>prot_H-canaliculatus_F_contig1004.74.1 ID=prot_H-canaliculatus_F_contig1004.74.1|Name=mRNA_H-canaliculatus_F_contig1004.74.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=165bp
LVTPEEHGRNSLPFCGADLHEQGGIKHLGVCSWNVPNLIASFRSYTYTVL
HSTRTSSRRLFRVYPSEPSKRVSKTLFLQNAERAEASHPGLLRTPEHHGR
IRLRPVRESVLHSTESRRRLQPCLPSGPPCPHAAHRQARRQFPSYRASDN
PARALAGRHLRVQE*

mRNA from alignment at H-canaliculatus_F_contig1004:28969..31220+

Legend: polypeptideCDSUTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-canaliculatus_F_contig1004.74.1 ID=mRNA_H-canaliculatus_F_contig1004.74.1|Name=mRNA_H-canaliculatus_F_contig1004.74.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2252bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1004:28969..31220+ (Hapterophycus canaliculatus Oshoro5f female)
TTGGTAACACCAGAAGAGCATGGGCGTAACTCTCTTCCTTTCTGTGGTGC
TGATCTTCATGAACAAGGCGGAATCAAGCACCTAGGTGTGTGTTCATGGA
ACGTGCCCAACTTGATTGCCTCATTCAGGAGCTATACCTACACAGTCCTA
CACAGTACGAGGACTTCATCAAGGAGGCTGTTCCGAGTCTACCCTAGCGA
ACCCTCGAAGCGGGTAAGCAAGACCCTTTTTCTCCAGAATGCTGAGAGAG
CAGAGGCCTCGCATCCAGGTGAAAGTTGGAGGAGATTTCATGAAATGCGA
CACATGCGTCGCGTTGAAGCGGTACGGTGCACCTGGTGTCAAACCAACAC
TGGACTTCACGGCCCGCCAGGCCATCGAGAAGGAGCTGTCTGCCCACCGG
AAGGTACTGTAGGCCACGTGCTTCAATACTACTCACGTAGTTACGAGACG
TGGAGCGCAGCCTTCCCCCCCACCCGGCGCGAACCTTTGTAGGTGTTGTG
GTTAAGGGCTTATGACGAGCCGCCATTCGTGACTCGAGTACCTTGTTTGA
AGCTGTTTTTCGGTAGCGCGCAAGATTGGGGCTGTGGGATGAATCGGCTG
TGAGAGGGTTGCTGTGCGATACCCAAAAGCCTTCTTTTTCCTCCAGGGCA
GCATCGCCTAGCGGGCACAAAGGAGAACAGGAAGAAGAGGGTAATGTTTT
CCAATATACATCATAACATCATGTCTAATGTAGGTGTGTGTCATGTTCAG
TCACGTACCTGACAAGTACAGCAATTTTCGTCATCTTTATGAAGGTCTTC
ATTTTTCATGCTCGCCTGGCTTCCTGTGGCGCTCGCACGCTAGATGGTCA
CATTGGGTCGGCTGGTCGTCGCCAACAGCACGAACAATGCCATGCGGGCC
AAGGCCGACGGCAACTAGCTCGACTTTGTGTTCATGTCTGTAGACGCGGC
GAACCAAAGGTCGCACGCCCTCCCAGCCCTCTACCCACCGACTCACGGCT
GTGGCAGGTGAGCACAGGCATGCACAATCTCTCTGTCCCTACCTTCTTCT
CGGACGCGCGCCAAAAACAATCATGGAGTACCCCGTCTCATTCATAGTTA
GGATGCCGAGTCGGAGTAAGAAGCCGCATAGACGCACACAGTCTCGACAC
GTGGCCCGTTCCGTTCACCCTGATGAGGAGCCTACTCCTGAGTCCTCACT
TCACCTCTTTTTTCTCTCGTGCTTTTGTGTTCCAAGGGCTTCTCCGAACG
CCAGAACATCATGGCCGCATACGTCTAAGACCAGTTCGCGAAAGTGTACT
TCACTCCACAGAATCTAGGAGGAGGTATGTGTGTTTGGGGGGGCATTGAT
GCATCAGTCGCAGCACCGGAATACACGCTGTCGAAATGGCGAGTTCGGCC
GCAGTTTAGACGCGGAACTACAGTTGTATACCCGTGCATGATTTGAGTCC
ATACCACACGCAAACGCGATAGATGAGATGGAAGAGTAAACAAGCGTGCA
AAATACGATCCCTCGGCTCAGATTCAATGCAACATGGGGTGTAAACCAAA
CCAAAGATTCTGATAGATATTCGAAGAGGTCTCGTAGGCAAGATTATCAG
CTCCCCCGGTGGGCGCGTGTGCAGCAACGAAAGTGAGGAGAACAACACAT
ATTCATCCCTAGGTAGACGACGCGAACGTAATCACAGCTGCGAGTGGCAT
CCGTCGACTGACGACACAATGTGTCTTTATCCGGGTACAGGTTGCAACCT
TGCCTGCCCAGCGGCCCACCTTGCCCTCACGCGGCTCATCGACAAGCACG
ACGACAGTTCCCGTCTTACCGGGCGTCCGATAATCCAGCACGCGCATTGG
CAGGTTAGAAAATTCATCTTATCGGGGAGCCTTATGGGTTGGTGAGTGCC
GACCAATAGGTACTAAGAGTCTTTGACGCTTCAGGTGTCCTTTGTTGGCT
GACTTCGGTATGTCTGGTGATGGACTCGAGGTATCGGTCTATGACTATAT
GAAACGGATCCTCCTCTCCACGAAACGTCGTGACTGAAGTGAACGGCAAT
TAGTCCTGAACGTTGCTGTACTTCCTTTCTCTTCACTGCCCCCCGAAACA
CCCCAGGTAGACATCTGCGTGTCCAAGAATAAGAACAACTTATTCGTCGG
ATACGCGGGCTCTTTGGTAGTGGCGAATGCCATCGGCGTGGTGGAGATAA
ACTTCATGCAAGTGGGTCACACCCACACGAAAATCGACCAAGTATTTTCG
AG

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1004:28969..31220+

>mRNA_H-canaliculatus_F_contig1004.74.1 ID=mRNA_H-canaliculatus_F_contig1004.74.1|Name=mRNA_H-canaliculatus_F_contig1004.74.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=990bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1004:28969..31220+ (Hapterophycus canaliculatus Oshoro5f female)
TTGGTAACACCAGAAGAGCATGGGCGTAACTCTCTTCCTTTCTGTGGTGC
TGATCTTCATGAACAAGGCGGAATCAAGCACCTAGGTGTGTGTTCATGGA
ACGTGCCCAACTTGATTGCCTCATTCAGGAGCTATACCTACACAGTCCTA
CACAGTACGAGGACTTCATCAAGGAGGCTGTTCCGAGTCTACCCTAGCGA
ACCCTCGAAGCGGGTAAGCAAGACCCTTTTTCTCCAGAATGCTGAGAGAG
CAGAGGCCTCGCATCCAGTTGGTAACACCAGAAGAGCATGGGCGTAACTC
TCTTCCTTTCTGTGGTGCTGATCTTCATGAACAAGGCGGAATCAAGCACC
TAGGTGTGTGTTCATGGAACGTGCCCAACTTGATTGCCTCATTCAGGAGC
TATACCTACACAGTCCTACACAGTACGAGGACTTCATCAAGGAGGCTGTT
CCGAGTCTACCCTAGCGAACCCTCGAAGCGGGTAAGCAAGACCCTTTTTC
TCCAGAATGCTGAGAGAGCAGAGGCCTCGCATCCAGGGCTTCTCCGAACG
CCAGAACATCATGGCCGCATACGTCTAAGACCAGTTCGCGAAAGTGTACT
TCACTCCACAGAATCTAGGAGGAGGGCTTCTCCGAACGCCAGAACATCAT
GGCCGCATACGTCTAAGACCAGTTCGCGAAAGTGTACTTCACTCCACAGA
ATCTAGGAGGAGGTTGCAACCTTGCCTGCCCAGCGGCCCACCTTGCCCTC
ACGCGGCTCATCGACAAGCACGACGACAGTTCCCGTCTTACCGGGCGTCC
GATAATCCAGCACGCGCATTGGCAGGTTGCAACCTTGCCTGCCCAGCGGC
CCACCTTGCCCTCACGCGGCTCATCGACAAGCACGACGACAGTTCCCGTC
TTACCGGGCGTCCGATAATCCAGCACGCGCATTGGCAGGTAGACATCTGC
GTGTCCAAGAATAAGTAGACATCTGCGTGTCCAAGAATAA