mRNA_H-canaliculatus_F_contig1004.74.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1004.74.1 vs. uniprot
Match: A0A6H5JUU1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUU1_9PHAE) HSP 1 Score: 170 bits (430), Expect = 1.640e-45 Identity = 81/116 (69.83%), Postives = 94/116 (81.03%), Query Frame = 2 Query: 266 QGFSERQNIMAAYV*DQFAKVYFTPQNLGGGCNLACPAAHLALTRLIDKHDDSSRLTGRPIIQHAHWQVDICVSKNKNNLFVGYAGSLVVANAIGVVEINFMQVGHTHTKIDQVFS 613
+G+SERQ IMA ++ QF +VYFTPQ LGGGCNLAC AAHLA+TR+IDK+ DS IIQHAHWQVD CVS+NKNN F+GYAG LV A+ + VVEI+FM VGHTHTKIDQVFS
Sbjct: 156 RGYSERQKIMAVHIEGQFVEVYFTPQYLGGGCNLACTAAHLAITRIIDKYHDSPPHPSGCIIQHAHWQVDNCVSENKNNFFLGYAGLLVAADVVRVVEIHFMMVGHTHTKIDQVFS 271
BLAST of mRNA_H-canaliculatus_F_contig1004.74.1 vs. uniprot
Match: A0A6H5KA02_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA02_9PHAE) HSP 1 Score: 103 bits (258), Expect = 2.740e-22 Identity = 56/115 (48.70%), Postives = 67/115 (58.26%), Query Frame = 2 Query: 269 GFSERQNIMAAYV*DQFAKVYFTPQNLGGGCNLACPAAHLALTRLIDKHDDSSRLTGRPIIQHAHWQVDICVSKNKNNLFVGYAGSLVVANAIGVVEINFMQVGHTHTKIDQVFS 613
GFSERQ +MA F V+F PQ GGG NL C A LAL RL + R I+ H Q+D CV +NKNN+ + + G LV A IG E+ F+ VGHTH KIDQVFS
Sbjct: 93 GFSERQKVMAVQAEGAFVDVHFVPQTTGGGSNLVCTALWLALKRLSAMGTKPGQ---RFYIKRLHLQLDNCVGENKNNIVLAFIGGLVAAGVIGSAEVCFLIVGHTHIKIDQVFS 204
BLAST of mRNA_H-canaliculatus_F_contig1004.74.1 vs. uniprot
Match: A0A6H5JCW3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCW3_9PHAE) HSP 1 Score: 97.1 bits (240), Expect = 7.260e-20 Identity = 45/67 (67.16%), Postives = 51/67 (76.12%), Query Frame = 2 Query: 413 HDDSSRLTGRPIIQHAHWQVDICVSKNKNNLFVGYAGSLVVANAIGVVEINFMQVGHTHTKIDQVFS 613
HD SR +IQHAHWQVD C S+NKNN F+G+AG LV A+ I VVEINFM VGHTH KIDQ+FS
Sbjct: 2 HDKGSRHPSGYLIQHAHWQVDNCASENKNNFFLGFAGLLVAASVIRVVEINFMMVGHTHMKIDQIFS 68
BLAST of mRNA_H-canaliculatus_F_contig1004.74.1 vs. uniprot
Match: A0A6H5KUA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUA0_9PHAE) HSP 1 Score: 74.3 bits (181), Expect = 2.530e-14 Identity = 36/58 (62.07%), Postives = 41/58 (70.69%), Query Frame = 2 Query: 440 RPIIQHAHWQVDICVSKNKNNLFVGYAGSLVVANAIGVVEINFMQVGHTHTKIDQVFS 613
RP I QVD CVS+NKN++ +GY GSLV IG VE+ FM VGHTH KIDQVFS
Sbjct: 8 RPYIYRFTIQVDNCVSENKNHIVIGYLGSLVAQGIIGEVEVQFMPVGHTHIKIDQVFS 65
BLAST of mRNA_H-canaliculatus_F_contig1004.74.1 vs. uniprot
Match: A0A6H5KN27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN27_9PHAE) HSP 1 Score: 74.3 bits (181), Expect = 1.290e-12 Identity = 41/86 (47.67%), Postives = 50/86 (58.14%), Query Frame = 2 Query: 356 GCNLACPAAHLALTRLIDKHDDSSRLTGRPIIQHAHWQVDICVSKNKNNLFVGYAGSLVVANAIGVVEINFMQVGHTHTKIDQVFS 613
G NL C A LAL RL + R I+ H Q+D CV +NKNN+ + + G LV A IG E+ F+ VGHTH KIDQVFS
Sbjct: 10 GSNLVCTALWLALKRLSAMWTKPGQ---RFYIKRLHLQLDNCVGENKNNIVLAFIGGLVAAGVIGSAEVCFLIVGHTHIKIDQVFS 92
BLAST of mRNA_H-canaliculatus_F_contig1004.74.1 vs. uniprot
Match: A0A6H5KAY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAY2_9PHAE) HSP 1 Score: 74.3 bits (181), Expect = 4.870e-12 Identity = 41/86 (47.67%), Postives = 50/86 (58.14%), Query Frame = 2 Query: 356 GCNLACPAAHLALTRLIDKHDDSSRLTGRPIIQHAHWQVDICVSKNKNNLFVGYAGSLVVANAIGVVEINFMQVGHTHTKIDQVFS 613
G NL C A LAL RL + R I+ H Q+D CV +NKNN+ + + G LV A IG E+ F+ VGHTH KIDQVFS
Sbjct: 10 GSNLVCTALWLALKRLSAMWTKPGQ---RFYIKRLHLQLDNCVGENKNNIVLAFIGGLVAAGVIGSAEVCFLIVGHTHIKIDQVFS 92
BLAST of mRNA_H-canaliculatus_F_contig1004.74.1 vs. uniprot
Match: A0A6H5JAR9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAR9_9PHAE) HSP 1 Score: 70.5 bits (171), Expect = 1.030e-10 Identity = 40/90 (44.44%), Postives = 51/90 (56.67%), Query Frame = 2 Query: 356 GCNLACPAAHLALTRLIDKHDDSSRLTGRP----IIQHAHWQVDICVSKNKNNLFVGYAGSLVVANAIGVVEINFMQVGHTHTKIDQVFS 613
G NL C LAL RL S + +P I+ H Q+D CV +NKNN+ + + G LV A IG E+ F+ +GHTH KIDQVFS
Sbjct: 10 GSNLECTTLWLALKRL-------SAMWTKPGERFHIKRRHLQLDNCVGENKNNIVMAFIGGLVAAGVIGFAEVCFLILGHTHIKIDQVFS 92
BLAST of mRNA_H-canaliculatus_F_contig1004.74.1 vs. uniprot
Match: A0A6H5JXN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXN7_9PHAE) HSP 1 Score: 60.5 bits (145), Expect = 2.950e-7 Identity = 28/56 (50.00%), Postives = 36/56 (64.29%), Query Frame = 2 Query: 446 IIQHAHWQVDICVSKNKNNLFVGYAGSLVVANAIGVVEINFMQVGHTHTKIDQVFS 613
++ A D CV +NKNN+ + + G LV A IG E+ F+ VGHTH KIDQVFS
Sbjct: 204 VLHQASPPSDNCVGENKNNIVLAFIGGLVAAGVIGSAEVCFLIVGHTHIKIDQVFS 259 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1004.74.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 8 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1004.74.1 >prot_H-canaliculatus_F_contig1004.74.1 ID=prot_H-canaliculatus_F_contig1004.74.1|Name=mRNA_H-canaliculatus_F_contig1004.74.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=165bp LVTPEEHGRNSLPFCGADLHEQGGIKHLGVCSWNVPNLIASFRSYTYTVLback to top mRNA from alignment at H-canaliculatus_F_contig1004:28969..31220+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1004.74.1 ID=mRNA_H-canaliculatus_F_contig1004.74.1|Name=mRNA_H-canaliculatus_F_contig1004.74.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2252bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1004:28969..31220+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1004:28969..31220+ >mRNA_H-canaliculatus_F_contig1004.74.1 ID=mRNA_H-canaliculatus_F_contig1004.74.1|Name=mRNA_H-canaliculatus_F_contig1004.74.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=990bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1004:28969..31220+ (Hapterophycus canaliculatus Oshoro5f female)back to top |