mRNA_H-canaliculatus_F_contig10.21.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig10.21.1 vs. uniprot
Match: A0A6H5JZN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZN1_9PHAE) HSP 1 Score: 303 bits (775), Expect = 3.270e-88 Identity = 251/414 (60.63%), Postives = 281/414 (67.87%), Query Frame = 3 Query: 1230 LALEGGGLPMSTTLYNFAIXXXXXXXXXXXXXXXXERMKNNPATPPDARTYSCLINACAKDANLEDALAYLTEMRAVGLAPTIFAYVSAMNAAKMANCWRXXXXXXXXXXXXXXXXXXXSFNNVVDAFGKDGQLARSLVQPHVDGDVQGSGNGRQEAAVPSNEVGSHVDPNAWQLEESSQLVKRMENNGIRPDVMSFNVLIDACAR-------------------GGRHWNASXXXXXXXXXXXXXXXXXXXXXXXXCRAATGDEWQIALDXXXXXXXXXXXXXXXXXXXXXGACVKAGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIRADPTLEPNQRTYTAVINCFQQFQGGQAVASLASTLAEFSSREEILLNPMPTSDVYLGSSLYPVEDGD 2414
LA G G+PMSTT+YNF I ERMK+NPATPPDA+TY+ LI+ACAKDANLEDALAYLTEMRAVGLAPT FAY+SAM+A K+A W+ SF NVVDA+GKDGQLAR+LVQ + N + AA NE+ S D NAW+ EE +LVKRMENNG+ DVMSFN+LIDACAR GG HW A+ CR T +EW++ALD XXXXXXXXXXXXXXXXXXXX KAGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXK+RADPTLE NQRTYT+ INCFQQFQGGQ+VASLASTLA SSREE+LL+P+PTSDVYLG S E G+
Sbjct: 77 LAQRGEGVPMSTTMYNFGIDAGVALL---------ERMKSNPATPPDAQTYAYLIDACAKDANLEDALAYLTEMRAVGLAPTFFAYISAMSAIKVAGQWKEALSLLDEMAKGRLISDVFSFYNVVDAYGKDGQLARTLVQTNA--------NPTEIAADSENEMRSDADLNAWRAEEPDELVKRMENNGVELDVMSFNILIDACARYTAHRVPLPLPMSHVPFRKGGSHWAAARLLKKMKSLGLRPNSLSYNPIIHSCRGGTDEEWRLALDLXXXXXXXXXXXXXXXXXXXXXXXAKAGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVRADPTLEANQRTYTSAINCFQQFQGGQSVASLASTLAGQSSREEMLLDPIPTSDVYLGGSSGTPEGGE 473
BLAST of mRNA_H-canaliculatus_F_contig10.21.1 vs. uniprot
Match: D7G0G1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0G1_ECTSI) HSP 1 Score: 292 bits (748), Expect = 2.040e-82 Identity = 484/653 (74.12%), Postives = 521/653 (79.79%), Query Frame = 3 Query: 456 FRKKVRVKKKSKRTMRSLRYNAFIRSAKELGPRGQWREVLRLLDKLAEDGIPLNSYTYNSAMSSIAKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEVLALEGGGLPMSTTLYNFAIXXXXXXXXXXXXXXXXERMKNNPATPPDARTYSCLINACAKDANLEDALAYLTEMRAVGLAPTIFAYVSAMNAAKMANCWRXXXXXXXXXXXXXXXXXXXSFNNVVDAFGKDGQLARSLVQPHVDGDVQGSGNGRQEAAVPSNEVGSHVDPNAWQLEESSQLVKRMENNGIRPDVMSFNVLIDACARGGRHWNASXXXXXXXXXXXXXXXXXXXXXXXXCRAATGDEWQIALDXXXXXXXXXXXXXXXXXXXXXGACVKAGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIRADPTLEPNQRTYTAVINCFQQFQGGQAVASLASTLAEFSSREEILLNPMPTSDVYLGSSLYPVEDGD 2414
FR+K+RV+K SKR R+ R+N+FI +AK G RGQWREVLRLLDK+AEDGIPLNSY YNSA+SSIAK+XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LAL G G+PMSTT+YNF IXXXXXXXXXXXXXXXX RMK+NPATPPDA+T MRAVGLAPT FAY+SAM+A K+A W+ SF NVVDA+GKDGQLAR+LVQ S N + AA NE+ S D NAW+ E+ +LVKRMENNG+ DVMSFN+LIDACARGG HW A+ CR T +EW++ALD XXXXXXXXXXXXXXXXXXXX KAGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXK+RADPTLE NQRTYT+ INCFQQFQGGQ+VASLASTLA SSREE+LLNP+PTSDVYLG S E G+
Sbjct: 4 FRRKIRVRKVSKRIARTTRHNSFISTAKVRGARGQWREVLRLLDKMAEDGIPLNSYAYNSALSSIAKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALALGGEGVPMSTTMYNFGIXXXXXXXXXXXXXXXXXRMKSNPATPPDAQTXXXXXXXXXXXXXXXXXXXXXXXMRAVGLAPTFFAYISAMSAIKVAGQWKEALSLLDEMAKGRLISDVFSFYNVVDAYGKDGQLARTLVQT--------SANPTEIAADSENEMRSDADLNAWRAEDPDELVKRMENNGVELDVMSFNILIDACARGGSHWAAARLLTKMKSLGLRPNSLSYNPIIHSCRGGTDEEWRLALDLXXXXXXXXXXXXXXXXXXXXXXXAKAGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVRADPTLEANQRTYTSAINCFQQFQGGQSVASLASTLAGQSSREEMLLNPIPTSDVYLGGSPGTPEGGE 648 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10.21.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig10.21.1 >prot_H-canaliculatus_F_contig10.21.1 ID=prot_H-canaliculatus_F_contig10.21.1|Name=mRNA_H-canaliculatus_F_contig10.21.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=782bp MSRVSCEPLFMHRLELRAGVMEPSPGPCARGSTSATCLAFASSPHKLRGLback to top mRNA from alignment at H-canaliculatus_F_contig10:82725..91580- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig10.21.1 ID=mRNA_H-canaliculatus_F_contig10.21.1|Name=mRNA_H-canaliculatus_F_contig10.21.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=8856bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10:82725..91580- (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10:82725..91580- >mRNA_H-canaliculatus_F_contig10.21.1 ID=mRNA_H-canaliculatus_F_contig10.21.1|Name=mRNA_H-canaliculatus_F_contig10.21.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=4692bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10:82725..91580- (Hapterophycus canaliculatus Oshoro5f female)back to top |