mRNA_H-paniculata_contig19604.4980.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19604.4980.1
Unique NamemRNA_H-paniculata_contig19604.4980.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig19604.4980.1 vs. uniprot
Match: D8LIA7_ECTSI (Lissencephaly type-1-like homology (LisH) motif-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIA7_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 9.960e-21
Identity = 39/51 (76.47%), Postives = 45/51 (88.24%), Query Frame = 1 
Query:    1 QSGMSVLKTPLCLEDKNRVAHCPTCSVEGRALGEGLPCAHHGQSFLICRQA 153
            QSG+SV+KTP C +D  R++HCPTCS EGRAL EGLPCAHHGQSFLICRQ+
Sbjct:  320 QSGVSVVKTPQCSQDSFRLSHCPTCSSEGRALAEGLPCAHHGQSFLICRQS 370
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19604.4980.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LIA7_ECTSI9.960e-2176.47Lissencephaly type-1-like homology (LisH) motif-co... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19604contigH-paniculata_contig19604:4311..4463 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score83.6
Seed ortholog evalue2.8e-14
Seed eggNOG ortholog2880.D8LIA7
Preferred nameMAEA
KEGG koko:K03245,ko:K14399,ko:K18624
KEGG Pathwayko03013,ko03015,map03013,map03015
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0002262,GO:0002376,GO:0002520,GO:0003674,GO:0003779,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005819,GO:0005826,GO:0005829,GO:0005856,GO:0005886,GO:0005887,GO:0005938,GO:0006109,GO:0006111,GO:0006508,GO:0006511,GO:0006807,GO:0006996,GO:0007010,GO:0007155,GO:0007275,GO:0007346,GO:0008092,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010498,GO:0010675,GO:0010677,GO:0010906,GO:0010941,GO:0015629,GO:0015630,GO:0016020,GO:0016021,GO:0016043,GO:0016363,GO:0019222,GO:0019538,GO:0019941,GO:0022610,GO:0030097,GO:0030099,GO:0030154,GO:0030163,GO:0030218,GO:0030863,GO:0030864,GO:0031224,GO:0031226,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032153,GO:0032155,GO:0032501,GO:0032502,GO:0032991,GO:0033032,GO:0033033,GO:0034101,GO:0034399,GO:0034657,GO:0042592,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043255,GO:0043353,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044459,GO:0044464,GO:0045721,GO:0045912,GO:0048468,GO:0048513,GO:0048519,GO:0048523,GO:0048534,GO:0048731,GO:0048821,GO:0048822,GO:0048856,GO:0048869,GO:0048872,GO:0050789,GO:0050794,GO:0051603,GO:0051726,GO:0060548,GO:0061515,GO:0062012,GO:0062014,GO:0065007,GO:0065008,GO:0070013,GO:0070938,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0099568,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.negative regulation of gluconeogenesis
EggNOG OGsKOG0396@1,KOG0396@2759
EC2.7.1.78
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009,ko03012,ko03019,ko04812
Exons1
Model size153
Cds size144
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929486.856294-UTR-H-paniculata_contig19604:4310..43191622929486.856294-UTR-H-paniculata_contig19604:4310..4319Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19604 4311..4319 +
1691480882.7058113-UTR-H-paniculata_contig19604:4310..43191691480882.7058113-UTR-H-paniculata_contig19604:4310..4319Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19604 4311..4319 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929486.9098392-CDS-H-paniculata_contig19604:4319..44631622929486.9098392-CDS-H-paniculata_contig19604:4319..4463Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19604 4320..4463 +
1691480882.7181778-CDS-H-paniculata_contig19604:4319..44631691480882.7181778-CDS-H-paniculata_contig19604:4319..4463Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19604 4320..4463 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19604.4980.1prot_H-paniculata_contig19604.4980.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19604 4320..4463 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19604.4980.1

>prot_H-paniculata_contig19604.4980.1 ID=prot_H-paniculata_contig19604.4980.1|Name=mRNA_H-paniculata_contig19604.4980.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=48bp
MSVLKTPLCLEDKNRVAHCPTCSVEGRALGEGLPCAHHGQSFLICRQA
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mRNA from alignment at H-paniculata_contig19604:4311..4463+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19604.4980.1 ID=mRNA_H-paniculata_contig19604.4980.1|Name=mRNA_H-paniculata_contig19604.4980.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=153bp|location=Sequence derived from alignment at H-paniculata_contig19604:4311..4463+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGAGCGGCATGTCCGTGCTGAAAACTCCTCTATGCTTGGAGGACAAGAA
TCGAGTGGCTCACTGTCCCACTTGCAGCGTGGAGGGGCGTGCGCTGGGGG
AAGGATTACCCTGCGCGCACCATGGACAATCGTTCCTCATCTGCAGACAG
GCA
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Coding sequence (CDS) from alignment at H-paniculata_contig19604:4311..4463+

>mRNA_H-paniculata_contig19604.4980.1 ID=mRNA_H-paniculata_contig19604.4980.1|Name=mRNA_H-paniculata_contig19604.4980.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=288bp|location=Sequence derived from alignment at H-paniculata_contig19604:4311..4463+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCCGTGCTGAAAACTCCTCTATGCTTGGAGGACAAGAATCGAGTGGC
TCACTGTCCCACTTGCAGCGTGGAGGGGCGTGCGCTGGGGGAAGGATTAC
CCTGCGCGCACCATGGACAATCGTTCCTCATCTGCAGACAGGCAATGTCC
GTGCTGAAAACTCCTCTATGCTTGGAGGACAAGAATCGAGTGGCTCACTG
TCCCACTTGCAGCGTGGAGGGGCGTGCGCTGGGGGAAGGATTACCCTGCG
CGCACCATGGACAATCGTTCCTCATCTGCAGACAGGCA
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