prot_H-paniculata_contig19604.4980.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig19604.4980.1
Unique Nameprot_H-paniculata_contig19604.4980.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length48
Homology
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BLAST of mRNA_H-paniculata_contig19604.4980.1 vs. uniprot
Match: D8LIA7_ECTSI (Lissencephaly type-1-like homology (LisH) motif-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIA7_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 1.970e-18
Identity = 36/48 (75.00%), Postives = 42/48 (87.50%), Query Frame = 0 
Query:    1 MSVLKTPLCLEDKNRVAHCPTCSVEGRALGEGLPCAHHGQSFLICRQA 48
            +SV+KTP C +D  R++HCPTCS EGRAL EGLPCAHHGQSFLICRQ+
Sbjct:  323 VSVVKTPQCSQDSFRLSHCPTCSSEGRALAEGLPCAHHGQSFLICRQS 370
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19604.4980.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LIA7_ECTSI1.970e-1875.00Lissencephaly type-1-like homology (LisH) motif-co... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19604contigH-paniculata_contig19604:4320..4463 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19604.4980.1mRNA_H-paniculata_contig19604.4980.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig19604 4311..4463 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig19604.4980.1 ID=prot_H-paniculata_contig19604.4980.1|Name=mRNA_H-paniculata_contig19604.4980.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=48bp
MSVLKTPLCLEDKNRVAHCPTCSVEGRALGEGLPCAHHGQSFLICRQA
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