prot_H-paniculata_contig19572.4960.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig19572.4960.1
Unique Nameprot_H-paniculata_contig19572.4960.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length91
Homology
BLAST of mRNA_H-paniculata_contig19572.4960.1 vs. uniprot
Match: UPI000539A888 (uncharacterized protein LOC104733287 n=1 Tax=Camelina sativa TaxID=90675 RepID=UPI000539A888)

HSP 1 Score: 52.8 bits (125), Expect = 3.590e-6
Identity = 30/91 (32.97%), Postives = 48/91 (52.75%), Query Frame = 0
Query:    3 WVCDNGATKHMTHGPDFLCHYQECRG--RVRLADGSYLPIEEVGILFIHFRFDSKAVLMKLTQVAHVPPLTHHLLSLGRFADSDQRDTRLY 91
            W+CD+GAT H+T     L  +Q   G   V +ADGS LPI   G   +     + ++ + LT V +VP +  +L+S+ R  +++Q     Y
Sbjct:  129 WICDSGATHHITSDLANLSLHQPYTGGEEVTIADGSGLPITHTGSALL----PTPSLSLALTDVLYVPNIAKNLISVYRLCNANQVSVHFY 215          
BLAST of mRNA_H-paniculata_contig19572.4960.1 vs. uniprot
Match: A0A2P6R9W2_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6R9W2_ROSCH)

HSP 1 Score: 53.1 bits (126), Expect = 4.370e-6
Identity = 30/87 (34.48%), Postives = 46/87 (52.87%), Query Frame = 0
Query:    1 EIWVCDNGATKHMTHGPDFLCHYQECRGRVRLA--DGSYLPIEEVGILFIHFRFDSKAVLMKLTQVAHVPPLTHHLLSLGRFA-DSD 84
              W+ D+GA++H+T     L       G  +L   +G+ L I  +G   +H    + +   KLT V HVP +TH+LLS+ RF  D+D
Sbjct:  379 STWLADSGASQHVTPDLSHLSEVTPYTGNAKLTVGNGNNLQIAHIGSSLMH----TPSASFKLTNVLHVPEITHNLLSVNRFVTDND 461          
BLAST of mRNA_H-paniculata_contig19572.4960.1 vs. uniprot
Match: UPI00063AF487 (uncharacterized protein LOC105789013 isoform X1 n=3 Tax=Gossypium raimondii TaxID=29730 RepID=UPI00063AF487)

HSP 1 Score: 49.7 bits (117), Expect = 7.070e-5
Identity = 30/93 (32.26%), Postives = 48/93 (51.61%), Query Frame = 0
Query:    1 EIWVCDNGATKHMTHGPDFLCHYQECRGR--VRLADGSYLPIEEVGILFIHFRFDSKAVLMKLTQVAHVPPLTHHLLSLGRFADSDQRDTRLY 91
             IW  D+GAT H+T     L       G+  V + +G  +PI  +G   +     ++A L++L  V HVP +  +L+S+G+FA    RD  +Y
Sbjct:  333 SIWYPDSGATNHITPEVSNLAAPSSYTGKSCVTMGNGDSVPIAHIGSTTL----STRAQLLRLQNVLHVPAVCKNLMSVGQFA----RDNNVY 417          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19572.4960.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
UPI000539A8883.590e-632.97uncharacterized protein LOC104733287 n=1 Tax=Camel... [more]
A0A2P6R9W2_ROSCH4.370e-634.48Putative RNA-directed DNA polymerase n=1 Tax=Rosa ... [more]
UPI00063AF4877.070e-532.26uncharacterized protein LOC105789013 isoform X1 n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19572contigH-paniculata_contig19572:4464..4736 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19572.4960.1mRNA_H-paniculata_contig19572.4960.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig19572 4464..4736 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig19572.4960.1 ID=prot_H-paniculata_contig19572.4960.1|Name=mRNA_H-paniculata_contig19572.4960.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=91bp
EIWVCDNGATKHMTHGPDFLCHYQECRGRVRLADGSYLPIEEVGILFIHF
RFDSKAVLMKLTQVAHVPPLTHHLLSLGRFADSDQRDTRLY
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