mRNA_H-paniculata_contig1943.4912.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1943.4912.1
Unique NamemRNA_H-paniculata_contig1943.4912.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig1943.4912.1 vs. uniprot
Match: A0A6H5JUI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUI6_9PHAE)

HSP 1 Score: 141 bits (355), Expect = 1.160e-33
Identity = 76/149 (51.01%), Postives = 101/149 (67.79%), Query Frame = 3 
Query:  510 VDANFAGDKDGGYSTSAAIVVYLAGAPFARKSQMQVIVTLSTVEAEYVALSRAC*MVLYFRHLLSTANLKQEHSTRIVEDNMGTGKLSRSVNVNDRTKHIDIKFHDVRSLVKDNVVNVQNVSTKLQTADVLTQRWDAVKVLRSRMMLMG 956
            VD++FAGD D GYST+  +V+Y AG      S  Q +V  S+VEAE+VALS+ C ++ YFRHLL T N   E +T + EDN G  KL+RS  +  RTKHID+KFH VRSLV D VV+V+ +ST LQ AD+ T+  +  + LR+  ML+G
Sbjct:  131 VDSDFAGDLDKGYSTTG-VVLYFAGGLVEWTSSKQTVVATSSVEAEFVALSKGCNIIKYFRHLLDTINQTHEEATVVWEDNSGALKLTRSFRITPRTKHIDVKFHHVRSLVTDGVVDVKQISTSLQKADIFTKGLNPSEFLRASGMLLG 278
[Close]
BLAST of mRNA_H-paniculata_contig1943.4912.1 vs. uniprot
Match: A0A6H5L217_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L217_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 3.860e-33
Identity = 79/149 (53.02%), Postives = 104/149 (69.80%), Query Frame = 3 
Query:  510 VDANFAGDKDGGYSTSAAIVVYLAGAPFARKSQMQVIVTLSTVEAEYVALSRAC*MVLYFRHLLSTANLKQEHSTRIVEDNMGTGKLSRSVNVNDRTKHIDIKFHDVRSLVKDNVVNVQNVSTKLQTADVLTQRWDAVKVLRSRMMLMG 956
            VD++FAGD D GYST+  +V+Y AG P    S  Q +V  S+VEAE+VALS+ C ++ YFRHLL T N  QE +T + EDN G  KL+RS  +  RTKHID+KFH VRSLV D VV+V+ +ST LQ AD+ T+  +  + LR+R ML+G
Sbjct:  683 VDSDFAGDLDKGYSTTG-VVLYFAGGPVEWTSSKQTVVATSSVEAEFVALSKGCNIIKYFRHLLDTINQTQEEATVVWEDNSGALKLTRSFRITPRTKHIDVKFHHVRSLVTDGVVDVKQISTSLQKADIFTKWLNPSEFLRARGMLLG 830
[Close]
BLAST of mRNA_H-paniculata_contig1943.4912.1 vs. uniprot
Match: A0A6H5KMI7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMI7_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 1.060e-30
Identity = 74/149 (49.66%), Postives = 106/149 (71.14%), Query Frame = 3 
Query:  510 VDANFAGDKDGGYSTSAAIVVYLAGAPFARKSQMQVIVTLSTVEAEYVALSRAC*MVLYFRHLLSTANLKQEHSTRIVEDNMGTGKLSRSVNVNDRTKHIDIKFHDVRSLVKDNVVNVQNVSTKLQTADVLTQRWDAVKVLRSRMMLMG 956
            VD++FAGD+D GYST+ A V+YLAGAP    S+ Q ++ +ST EAE VALS+AC +V++FR+LL + N+KQE  T + EDN G   L+    +  RTKHID+K+H VR L +  +V+V  + T LQ AD+LT+   AVK L++R++L+G
Sbjct:  606 VDSDFAGDQDKGYSTTGA-VLYLAGAPVDWISKKQTVLAISTFEAEAVALSKACTIVIHFRNLLKSLNMKQEQPTVVFEDNTGAIALAMGAKLTPRTKHIDVKYHHVRYLEEKKIVDVNYIETNLQKADILTKSQGAVKFLQNRLLLLG 753
[Close]
BLAST of mRNA_H-paniculata_contig1943.4912.1 vs. uniprot
Match: A0A6H5KTF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTF4_9PHAE)

HSP 1 Score: 138 bits (347), Expect = 1.280e-30
Identity = 73/149 (48.99%), Postives = 106/149 (71.14%), Query Frame = 3 
Query:  510 VDANFAGDKDGGYSTSAAIVVYLAGAPFARKSQMQVIVTLSTVEAEYVALSRAC*MVLYFRHLLSTANLKQEHSTRIVEDNMGTGKLSRSVNVNDRTKHIDIKFHDVRSLVKDNVVNVQNVSTKLQTADVLTQRWDAVKVLRSRMMLMG 956
            VD++FAGD+D GYST+ A V+YLAGAP    S+ Q ++ +ST EAE VALS+AC +V++FR+LL + N+KQE  T + EDN GT   ++   +  RTKHID+K+H V  L +  +V+V+   T LQ AD+LT+   AVK L++R++L+G
Sbjct:  375 VDSDFAGDQDKGYSTTGA-VLYLAGAPVDWISKKQTVLAISTFEAEAVALSKACTIVIHFRNLLKSLNMKQEQPTVVFEDNAGTIAFAKGAKLTPRTKHIDLKYHHVWYLEEKKIVDVKYTETNLQKADILTKSQGAVKFLQNRLLLLG 522
[Close]
BLAST of mRNA_H-paniculata_contig1943.4912.1 vs. uniprot
Match: A0A6H5K4G1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4G1_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 2.090e-30
Identity = 75/148 (50.68%), Postives = 100/148 (67.57%), Query Frame = 3 
Query:  513 DANFAGDKDGGYSTSAAIVVYLAGAPFARKSQMQVIVTLSTVEAEYVALSRAC*MVLYFRHLLSTANLKQEHSTRIVEDNMGTGKLSRSVNVNDRTKHIDIKFHDVRSLVKDNVVNVQNVSTKLQTADVLTQRWDAVKVLRSRMMLMG 956
            D++FAGD D GYST+  +V+Y AG P    S  Q ++  S+VEAE+VALS+ C ++ YFRHLL T N  QE +T + EDN G  KL RS  +  RTKHID+K H VRSLV D VV+V+ +ST LQ AD+ T+  +  + LR+R M +G
Sbjct:  730 DSDFAGDLDKGYSTTG-VVLYFAGGPVEWTSSKQTVMATSSVEAEFVALSKECNIIKYFRHLLDTINQTQEEATVVWEDNSGALKLPRSFRITPRTKHIDVKLHHVRSLVADGVVDVKKISTSLQKADIFTKGLNPSEFLRARGMPLG 876
[Close]
BLAST of mRNA_H-paniculata_contig1943.4912.1 vs. uniprot
Match: A0A6H5JRQ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRQ5_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 3.340e-30
Identity = 73/149 (48.99%), Postives = 107/149 (71.81%), Query Frame = 3 
Query:  510 VDANFAGDKDGGYSTSAAIVVYLAGAPFARKSQMQVIVTLSTVEAEYVALSRAC*MVLYFRHLLSTANLKQEHSTRIVEDNMGTGKLSRSVNVNDRTKHIDIKFHDVRSLVKDNVVNVQNVSTKLQTADVLTQRWDAVKVLRSRMMLMG 956
            VD++FAGD+D GYST+ A V+YLAGAP    S+ Q ++ +ST EAE VALS+AC +V++FR+LL + N+ QE  T + EDN G    ++S  +  RTKHID+K+H VR L +  +V+V+ + T LQ AD+LT+   AVK L++R++L+G
Sbjct: 1090 VDSDFAGDQDKGYSTTGA-VLYLAGAPVDWISKKQTVLAISTFEAEAVALSKACTIVIHFRNLLKSLNMNQEQPTVVFEDNTGAIAFAKSAKLTPRTKHIDVKYHHVRYLEEKKIVDVKYIETNLQKADILTKSQGAVKFLQNRLLLLG 1237
[Close]
BLAST of mRNA_H-paniculata_contig1943.4912.1 vs. uniprot
Match: A0A6H5KM24_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM24_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 3.690e-30
Identity = 72/149 (48.32%), Postives = 107/149 (71.81%), Query Frame = 3 
Query:  510 VDANFAGDKDGGYSTSAAIVVYLAGAPFARKSQMQVIVTLSTVEAEYVALSRAC*MVLYFRHLLSTANLKQEHSTRIVEDNMGTGKLSRSVNVNDRTKHIDIKFHDVRSLVKDNVVNVQNVSTKLQTADVLTQRWDAVKVLRSRMMLMG 956
            VD++FAGD+D GYST+ A V+YLAGAP    S+ Q ++ +ST EAE VALS+AC +V++FR+LL + N+KQE  T + EDN G    ++   +  RTKHID+K+H VR L +  +++V+ + T LQ AD+LT+   AVK L++R++L+G
Sbjct: 1252 VDSDFAGDQDKGYSTTGA-VLYLAGAPVDWISKKQTVLAISTFEAEAVALSKACTIVIHFRNLLKSLNMKQEQPTVVFEDNTGAIAFAKGAKLTPRTKHIDVKYHHVRYLEEKKIIDVKYIETNLQKADILTKSQGAVKFLQNRLLLLG 1399
[Close]
BLAST of mRNA_H-paniculata_contig1943.4912.1 vs. uniprot
Match: A0A6H5K502_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K502_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 4.400e-29
Identity = 77/151 (50.99%), Postives = 109/151 (72.19%), Query Frame = 3 
Query:  510 VDANFAGDKDGGYSTSAAIVVYLAGAPFARKSQMQVIVTLSTVEAEYVALSRAC*MVLYFRHLLSTANLKQEHSTRIVEDNMGTGKLSRSVN--VNDRTKHIDIKFHDVRSLVKDNVVNVQNVSTKLQTADVLTQRWDAVKVLRSRMMLMG 956
            VD++FAGD D   ST+  +V++LAG P   +S  Q++V LS+VEAEYVA+S+AC M++++RHLLS  N  QE +TR+ EDN  T  +S SVN  +  RTKHI IK+H VRSL++D VV V+ + +  Q AD+LT+   AVK LR+R++L+G
Sbjct:  417 VDSDFAGDGDDRRSTTG-VVLFLAGGPVDWRSVKQMVVALSSVEAEYVAMSKACTMIIHYRHLLSI-NQTQEEATRMFEDN--TAAISTSVNNKLTPRTKHIGIKYHHVRSLIEDKVVAVEYIESDAQKADILTKSLGAVKFLRNRLLLLG 563
[Close]
BLAST of mRNA_H-paniculata_contig1943.4912.1 vs. uniprot
Match: A0A6H5KGY1_9PHAE (Integrase catalytic domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGY1_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 1.970e-28
Identity = 70/148 (47.30%), Postives = 103/148 (69.59%), Query Frame = 3 
Query:  513 DANFAGDKDGGYSTSAAIVVYLAGAPFARKSQMQVIVTLSTVEAEYVALSRAC*MVLYFRHLLSTANLKQEHSTRIVEDNMGTGKLSRSVNVNDRTKHIDIKFHDVRSLVKDNVVNVQNVSTKLQTADVLTQRWDAVKVLRSRMMLMG 956
            D++FAGD+D GYST+  +V+YLAG P    ++ Q ++ +ST EAE VALS+AC MV++FR+LL +  +KQ+ +T + EDN G    ++   +  RTKHID+KFH VR L   NVV+V  + T  Q AD+LT+   AVK L++R++L+G
Sbjct: 1573 DSDFAGDQDKGYSTTG-VVLYLAGGPVIWIAKNQTVLAISTFEAEVVALSKACLMVIHFRNLLESLKMKQKQATVLYEDNAGAVAFAKGSKITPRTKHIDVKFHHVRHLEDQNVVDVTYIDTNRQRADILTKSSGAVKFLQNRLILLG 1719
[Close]
BLAST of mRNA_H-paniculata_contig1943.4912.1 vs. uniprot
Match: A0A6H5KBY7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBY7_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 2.010e-28
Identity = 70/148 (47.30%), Postives = 103/148 (69.59%), Query Frame = 3 
Query:  513 DANFAGDKDGGYSTSAAIVVYLAGAPFARKSQMQVIVTLSTVEAEYVALSRAC*MVLYFRHLLSTANLKQEHSTRIVEDNMGTGKLSRSVNVNDRTKHIDIKFHDVRSLVKDNVVNVQNVSTKLQTADVLTQRWDAVKVLRSRMMLMG 956
            D++FAGD+D GYST+  +V+YLAG P    ++ Q ++ +ST EAE VALS+AC MV++FR+LL +  +KQ+ +T + EDN G    ++   +  RTKHID+KFH VR L   NVV+V  + T  Q AD+LT+   AVK L++R++L+G
Sbjct: 1644 DSDFAGDQDKGYSTTG-VVLYLAGGPVIWIAKNQTVLAISTFEAEVVALSKACLMVIHFRNLLESLKMKQKQATVLYEDNAGAVAFAKGSKITPRTKHIDVKFHHVRHLEDQNVVDVTYIDTNRQRADILTKSSGAVKFLQNRLILLG 1790
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1943.4912.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JUI6_9PHAE1.160e-3351.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L217_9PHAE3.860e-3353.02Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KMI7_9PHAE1.060e-3049.66Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KTF4_9PHAE1.280e-3048.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4G1_9PHAE2.090e-3050.68Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JRQ5_9PHAE3.340e-3048.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KM24_9PHAE3.690e-3048.32Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5K502_9PHAE4.400e-2950.99Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KGY1_9PHAE1.970e-2847.30Integrase catalytic domain-containing protein n=7 ... [more]
A0A6H5KBY7_9PHAE2.010e-2847.30Integrase catalytic domain-containing protein n=1 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1943contigH-paniculata_contig1943:3397..6108 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.5
Seed ortholog evalue5.1e-07
Seed eggNOG ortholog67593.Physo137439
Hectar predicted targeting categoryother localisation
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs3QHHC@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size2712
Cds size288
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1943.4912.1prot_H-paniculata_contig1943.4912.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1943 4071..4358 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929477.5245967-UTR-H-paniculata_contig1943:3396..40701622929477.5245967-UTR-H-paniculata_contig1943:3396..4070Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1943 3397..4070 +
1691480878.8410666-UTR-H-paniculata_contig1943:3396..40701691480878.8410666-UTR-H-paniculata_contig1943:3396..4070Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1943 3397..4070 +
1622929477.5494175-UTR-H-paniculata_contig1943:4358..61081622929477.5494175-UTR-H-paniculata_contig1943:4358..6108Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1943 4359..6108 +
1691480878.8683677-UTR-H-paniculata_contig1943:4358..61081691480878.8683677-UTR-H-paniculata_contig1943:4358..6108Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1943 4359..6108 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929477.5373528-CDS-H-paniculata_contig1943:4070..43581622929477.5373528-CDS-H-paniculata_contig1943:4070..4358Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1943 4071..4358 +
1691480878.8580801-CDS-H-paniculata_contig1943:4070..43581691480878.8580801-CDS-H-paniculata_contig1943:4070..4358Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1943 4071..4358 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1943.4912.1

>prot_H-paniculata_contig1943.4912.1 ID=prot_H-paniculata_contig1943.4912.1|Name=mRNA_H-paniculata_contig1943.4912.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=96bp
MVLYFRHLLSTANLKQEHSTRIVEDNMGTGKLSRSVNVNDRTKHIDIKFH
DVRSLVKDNVVNVQNVSTKLQTADVLTQRWDAVKVLRSRMMLMGN*
back to top

mRNA from alignment at H-paniculata_contig1943:3397..6108+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1943.4912.1 ID=mRNA_H-paniculata_contig1943.4912.1|Name=mRNA_H-paniculata_contig1943.4912.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2712bp|location=Sequence derived from alignment at H-paniculata_contig1943:3397..6108+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCAATGACTATATTTCAGGGAGCTCGTCTGACCCAACAAGAGTCTCGGC
GGAACCGCATAGGTCAGGGCTTTCATTCGCACCGCCGTATAAGGTCCAAC
ACTTTAACTTCACGGTGATGTGCGAGTTTCACGTAACTTTATCGCCAAAC
TATGTGTGAATCTCAGCAATAATATTCTCAAGTTCGTGCCCATAACGACC
CAGAGACATAATTCACTGACAAGCTTTTGGTATCAAATCGGTCATGGAAT
CGATTCCCTCCATTTGTATCCCTTCGGTTCGTCGCCTTCATGCCCACAAC
GACCTAGAGACATAATCTACTGAAAAGCTTTCGGCATCAAATCAGTCACG
GAGTCAATTCCCTCAATCTTTCTCACTTTGGTCTGAGTTGGTGTCGTCCA
AAAACGATTGCGCTCGATAATCGAACGATCCCTACGATACGTCGTTTAAT
ACTACTTTGCACTCTGAATGTGAAGTTACACTCTGAATCTCACCAATATA
CGGTTATAAGTTGACGCTAACTTTGCAGGAGACAAAGATGGAGGATACTC
CACGTCTGCAGCGATTGTTGTTTACCTGGCGGGAGCACCATTTGCCAGGA
AATCTCAGATGCAAGTAATTGTAACACTGTCAACGGTCGAGGCGGAGTAT
GTTGCGCTGTCAAGAGCTTGCTAGATGGTTTTGTACTTCCGCCACTTACT
CAGTACGGCGAACCTAAAGCAAGAACACTCGACACGTATTGTAGAGGACA
ACATGGGGACGGGTAAACTAAGCCGTAGTGTTAACGTCAACGACCGAACA
AAACATATCGACATCAAGTTCCACGACGTAAGGTCGTTAGTTAAGGATAA
CGTAGTGAACGTACAAAACGTTTCAACGAAGCTGCAGACGGCAGACGTCC
TTACGCAGAGGTGGGATGCGGTCAAAGTCTTAAGAAGCCGAATGATGCTG
ATGGGGAACTAAATGGAATGGTTGTGTGTGATGAAGGATCAATGTGGATT
GAGATTAAGAAATGATTTCTTGAAAAACAAATTACTAGCAGTTCGAGAGG
GCAGTTATTAGAGTTATTGACCAAGTGATCGATTGCATTAATATGATTGA
TTGATTTAAATATACAAATTTAGTTTTTGAATAAAGAACTTTGCAATTCT
TGAGAGGACATGTTGGAGTAAATCTTAGTGGCAAGAACAGCTTACTCAAA
TATGTAGTGTTGGTATAGTTGTGTTGACAGGTGTGTCTACCACGAAACCG
ATGTATAGGCGACACTAGGGCGAGGCCCGCACTAATTCACTCTGAGGTTG
GATTCAACTCCTGCGCAGAGTACTGTAGGAAAAGAGGAGAGCTACTGCTA
GTCTTTACTGCATGATCTACTGATAAAGCAGTCCTGTTTAATACTGCCGT
ATAGGGACACATGGCTAGTAGTGGCTGTTTTGGATACAGAAACCAGGCTG
TAGTAACATCAATTCTGCCGGAAGCATAAATATACACCAGGCGCACAGCA
CAAGAACACTGCGCAACAGTGTCATAATACCCATCTTCGAGTACGAGCTA
CCTCAAACAATCCAAGTCTACAACCAAGCTTTAGCCCGAGTCAACCAATG
TTATATAACGTGTCAGCGTAATCTTTAGGCAAAGACAACAATCGGCAGTT
TTACGTGAGCAAAGGGCTAATCTCGCAACGCGATATGGCGATTCATCAAT
CGGAAAAAAACGAGCAGATAGCACCGGATCATGTGAACGGAGTATGGAGC
ATTGACGGAGAATGAGATTTGCGGATGGCTGCCGGCTGAAGCTGCAGAAA
TGCTTCACCTCTGAAACATTCTAGGCACTTCGGATGTGAAGAAAATACAA
GAGCAAGAAGCTCACAGGCAACGTGCGAGTCGATCCTCTGCAAGTTGGAG
GCTGACAACGCGTCGCCCAACGTGCAGAGGCCTGATCTCAAGGACACAAT
GAATACCTACCACACATGACGCAAGTGCAGAAGAGTTCTTGCTTCGAGGA
TGACGAGCAAAACATCATTTTTCATCGCAAACTCAGATTTGTTACCCTAT
TATAAAATCTTGGCATATTGTGGGTACCAACTCTTGAATTATTATAAATA
GGTAACATATAATATCAAATGTATTTCTTTTGTTATTCCCTTCTGACAAT
AGTAGACTCAGAGCTGGCTGTTGGAAATCTTCAAAGGTAAGCTGACAAAG
TAGGGAAAATGAACGGCTGACGAAACGAGGAAACGTCAAACCTACTAATA
ACCACGCATTGTACTCGAATACTCGACCTACAGAAAACCCTCTTGGACCA
AAAACTGTTGTCCCTCTTTGAGCACTATAAATATGTAACTTACGCTTACC
AGATCAAAACATCCCGTATAGTGAAATCCCCCGCTATCTAACAGAACAAC
ATATGCAAAATCGAAACAGGATGAAACGCTGTCATCGAACACTACGACGC
CGCTAAACTCCACCCCCACGCTCGAGGATTGAGGGCCCCTTCTGCTGCTT
CTTGCCTTACCCGCAGAGCTAGTCTGTACATCTGCACCCGTCTCGAGATT
GCCACCTGTGTAGTCACCGAAATGATCTGACTCCTTTCTGCAAAACCTCG
TCGCCCTCCTGTTCTCCCACCACGCTGGATGCCACCTGCTCAAGCAGCTC
CTCTCCGCACTTTCCCAGACGCCTAAAGCTTTCCACCGCGAGGGTGATAA
GTTTGAAAGAAC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig1943:3397..6108+

>mRNA_H-paniculata_contig1943.4912.1 ID=mRNA_H-paniculata_contig1943.4912.1|Name=mRNA_H-paniculata_contig1943.4912.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=576bp|location=Sequence derived from alignment at H-paniculata_contig1943:3397..6108+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTTTTGTACTTCCGCCACTTACTCAGTACGGCGAACCTAAAGCAAGA
ACACTCGACACGTATTGTAGAGGACAACATGGGGACGGGTAAACTAAGCC
GTAGTGTTAACGTCAACGACCGAACAAAACATATCGACATCAAGTTCCAC
GACGTAAGGTCGTTAGTTAAGGATAACGTAGTGAACGTACAAAACGTTTC
AACGAAGCTGCAGACGGCAGACGTCCTTACGCAGAGGTGGGATGCGGTCA
AAGTCTTAAGAAGCCGAATGATGCTGATGGGGAACTAAATGGTTTTGTAC
TTCCGCCACTTACTCAGTACGGCGAACCTAAAGCAAGAACACTCGACACG
TATTGTAGAGGACAACATGGGGACGGGTAAACTAAGCCGTAGTGTTAACG
TCAACGACCGAACAAAACATATCGACATCAAGTTCCACGACGTAAGGTCG
TTAGTTAAGGATAACGTAGTGAACGTACAAAACGTTTCAACGAAGCTGCA
GACGGCAGACGTCCTTACGCAGAGGTGGGATGCGGTCAAAGTCTTAAGAA
GCCGAATGATGCTGATGGGGAACTAA
back to top