mRNA_H-paniculata_contig19387.4900.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19387.4900.1
Unique NamemRNA_H-paniculata_contig19387.4900.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig19387.4900.1 vs. uniprot
Match: D7FMU7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMU7_ECTSI)

HSP 1 Score: 127 bits (320), Expect = 1.300e-29
Identity = 121/364 (33.24%), Postives = 148/364 (40.66%), Query Frame = 1 
Query:   61 MCRYNRLVRYYEALGFRQPKGSRVHYLHNNDQLFRKVPMRRPLAPTLPPRARRSNGLAVRGGSFLLVRLQAKTGGFVRSTADGNVSAAXXXXXXXXXXXXXXXXXXXPSAVAPALKSGAE-----SGRSSLGSLRKDTNPGGDSSGGGAAM------------GEFSVGVG----GGGVCGRHGXXXXXXXXXXXXXXXSADHWILMQEGDLVRDEDTQAVQPTGGRGTEPAL-------------------------------------------------------------------------EGKCTLCTAFRYIPGRGIVCFESAAYGKYLCVEPDGKVIADRSWDNSWEQFRLERFSD 870
            M +YN LVRYYE LGF+Q +GS+VHY H+ DQ++RK+PM R ++    PR+RRS  L   GG FL+VRLQ K G FVRSTADG+V +                     +A A A     E     +G   +G  R  +  G +S+ G  A             GE + G G    G G     G                 + W    EGD  R     +   +GG GT                                                                              G   L T   +   RGIVCFESA YGKYLCVEPDGKV+ADRSWDNSWEQFRLERF+D
Sbjct:    1 MGKYNHLVRYYEDLGFKQLEGSKVHYEHHCDQVYRKIPMIRQVSARAQPRSRRSPRLVDNGGWFLVVRLQTKAGSFVRSTADGDVVSPGALNNASATAST--------TAAAHAADVDTEEDCENAGDCCMGHARSSSGSGAESTCGALAAAXXXXXRASLATGEAATGWGSCGGGDGCAAPAGRGLAATAAAPTIAGGVVEEWSA-GEGD--RKCGGSSSGGSGGFGTNSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRRGRGTDHLWTLMVH-EVRGIVCFESA-YGKYLCVEPDGKVVADRSWDNSWEQFRLERFAD 351
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BLAST of mRNA_H-paniculata_contig19387.4900.1 vs. uniprot
Match: A0A835Z6V2_9STRA (Inositol oxygenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6V2_9STRA)

HSP 1 Score: 108 bits (269), Expect = 1.150e-22
Identity = 104/287 (36.24%), Postives = 134/287 (46.69%), Query Frame = 1 
Query:    1 VFATLGRLSVPEIRLEAEEDMCRYNRLVRYYEALGFRQPKGSRV-HYLHNNDQLFRKVPMRRPLAPTLPPRARRSNGLAVRGGSFLLVRLQAKTGGFVRSTADGNVSAAXXXXXXXXXXXXXXXXXXXPSAVAPALKSGAESGRSSLGSLRKDTNPGGDSSGGGAAMGEFSVGVGGGGVCGRHGXXXXXXXXXXXXXXXSADHWILMQEGDLVRDEDTQAVQPTGGRGTEPALEGKCTLCTAFRYIPGRGIVCFESAAYGKYLCVEPDGKVIADRSWDNSWEQFRLE 858
            +FA + RL VP+IRLEAEED  R+NRLVR+YE LGF    G+ V H  H ++  +R VPM R L          ++     G +FLLVR++A+ G FVR+ ADG+++                      +A A A  + AE                       A  GE      G G      XXXXXXXXXXXXXXX    WIL+QE                                        G+VCFES+ YG++LC EPDGKV+ADR WD++WE F +E
Sbjct:  165 LFAAVARLGVPQIRLEAEEDTRRHNRLVRFYEGLGFAVRDGASVLHLAHGDETTYRSVPMYRVLRGDAFDAYAAAHTPLAEGAAFLLVRMRARGGAFVRAAADGSLAV---------------------TAAAAAQAATAE-----------------------ARTGERCCEGEGEGXX----XXXXXXXXXXXXXXXXXXRWILLQEA--------------------------------------AGMVCFESS-YGRFLCAEPDGKVVADRRWDDAWEHFSVE 364
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BLAST of mRNA_H-paniculata_contig19387.4900.1 vs. uniprot
Match: A0A6H5KR05_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR05_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 1.590e-15
Identity = 38/43 (88.37%), Postives = 41/43 (95.35%), Query Frame = 1 
Query:  742 RGIVCFESAAYGKYLCVEPDGKVIADRSWDNSWEQFRLERFSD 870
            RGIVCFESA YGKYLCVEPDGKV+ADR WDNSWEQF+LERF+D
Sbjct:  319 RGIVCFESA-YGKYLCVEPDGKVVADRPWDNSWEQFKLERFAD 360
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BLAST of mRNA_H-paniculata_contig19387.4900.1 vs. uniprot
Match: A0A7S1B568_9STRA (Inositol oxygenase n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B568_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 2.950e-5
Identity = 27/52 (51.92%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:   37 IRLEAEEDMCRYNRLVRYYEALGFRQPKGSRVHYLHNND-QLFRKVPMRRPL 189
            + L+AEEDM RYNRLVR+Y+ LG +    +R+ Y++NND + +RK+PM R L
Sbjct:   75 VLLDAEEDMSRYNRLVRFYKQLGCQVKPNTRIQYINNNDGETYRKIPMYRGL 126
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19387.4900.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FMU7_ECTSI1.300e-2933.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z6V2_9STRA1.150e-2236.24Inositol oxygenase n=1 Tax=Tribonema minus TaxID=3... [more]
A0A6H5KR05_9PHAE1.590e-1588.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1B568_9STRA2.950e-551.92Inositol oxygenase n=1 Tax=Corethron hystrix TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19387contigH-paniculata_contig19387:1098..4413 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.8
Seed ortholog evalue3.1e-07
Seed eggNOG ortholog65071.PYU1_T013032
KEGG rclassRC00465
KEGG koko:K00469,ko:K15688
KEGG ReactionR01184
KEGG Pathwayko00053,ko00562,map00053,map00562
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Inositol oxygenase. Source PGD
EggNOG OGs1MFQ8@121069,KOG1573@1,KOG1573@2759
EC1.13.99.1,2.3.2.27
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Exons4
Model size870
Cds size870
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19387.4900.1prot_H-paniculata_contig19387.4900.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19387 1098..4413 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929475.525756-CDS-H-paniculata_contig19387:1097..12651622929475.525756-CDS-H-paniculata_contig19387:1097..1265Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19387 1098..1265 +
1691480877.8110244-CDS-H-paniculata_contig19387:1097..12651691480877.8110244-CDS-H-paniculata_contig19387:1097..1265Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19387 1098..1265 +
1622929475.5421662-CDS-H-paniculata_contig19387:1811..22671622929475.5421662-CDS-H-paniculata_contig19387:1811..2267Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19387 1812..2267 +
1691480877.8214355-CDS-H-paniculata_contig19387:1811..22671691480877.8214355-CDS-H-paniculata_contig19387:1811..2267Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19387 1812..2267 +
1622929475.5616727-CDS-H-paniculata_contig19387:3448..35621622929475.5616727-CDS-H-paniculata_contig19387:3448..3562Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19387 3449..3562 +
1691480877.8289835-CDS-H-paniculata_contig19387:3448..35621691480877.8289835-CDS-H-paniculata_contig19387:3448..3562Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19387 3449..3562 +
1622929475.5762944-CDS-H-paniculata_contig19387:4281..44131622929475.5762944-CDS-H-paniculata_contig19387:4281..4413Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19387 4282..4413 +
1691480877.8376987-CDS-H-paniculata_contig19387:4281..44131691480877.8376987-CDS-H-paniculata_contig19387:4281..4413Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19387 4282..4413 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19387.4900.1

>prot_H-paniculata_contig19387.4900.1 ID=prot_H-paniculata_contig19387.4900.1|Name=mRNA_H-paniculata_contig19387.4900.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=290bp
VFATLGRLSVPEIRLEAEEDMCRYNRLVRYYEALGFRQPKGSRVHYLHNN
DQLFRKVPMRRPLAPTLPPRARRSNGLAVRGGSFLLVRLQAKTGGFVRST
ADGNVSAAAAAARAASASPSSSSSSCSPSAVAPALKSGAESGRSSLGSLR
KDTNPGGDSSGGGAAMGEFSVGVGGGGVCGRHGGGAGGKGGVGGGGGGSA
DHWILMQEGDLVRDEDTQAVQPTGGRGTEPALEGKCTLCTAFRYIPGRGI
VCFESAAYGKYLCVEPDGKVIADRSWDNSWEQFRLERFSD
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mRNA from alignment at H-paniculata_contig19387:1098..4413+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19387.4900.1 ID=mRNA_H-paniculata_contig19387.4900.1|Name=mRNA_H-paniculata_contig19387.4900.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3316bp|location=Sequence derived from alignment at H-paniculata_contig19387:1098..4413+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGTTCGCTACCTTGGGAAGGCTTTCTGTGCCGGAGATTAGGCTAGAGGC
AGAGGAGGACATGTGCAGGTACAATCGCCTGGTGCGATACTACGAAGCCC
TGGGATTCCGCCAGCCGAAAGGGTCCCGGGTGCACTACCTGCATAACAAC
GACCAACTGTTTCGCAAGGTATGTGTATGTGTGTGTGTGTGTTGTCCAGC
AGCGTTGATTGCAGCGAGCTCACCCTTGTTTGTTTTTGCGTTCATTCTCG
TGCTCTATTATGTATATTCTTTTGTAGGTTGCCTTCTTACCTTTGTCTGC
AGACAGCCCACCCTGATGGATGATGTGGCCTTCGTTTACGTGTTTTTTCC
TTTGTCTTGGTTTTACTGTTTCTGCTCTCGTTTTATCTTTTGTGCAATAT
TTTTCGTGATTTTGTTTCCCTGTTTTTAGGTATCTGTTACGGTTTATTGC
CGTAGTTTAGTTACGGTATAGTTTCGCGATTCCCTTCGTTCGCTATTTAC
CCTGCGCCCACGGGTCTGAGGGATCGGATGAATATGTAAATAATAGGAAT
AATAATAATAATAATATAATTTTTTTCGAATGCTTCGCGTCCCCCCTTCC
CTTGACGTGCTCCGTATTCTCGAGGACGCGTGACCTATGGTATTACAGAT
ACAGCTTGCAGAACATGACTTGTTCCCTTTTCTCCCCCTACCCTTCCCTC
GCTGAAAAAATCAGGTACCCATGCGGCGACCGCTAGCACCGACACTACCT
CCGAGAGCCCGCCGATCGAATGGCCTGGCGGTCCGCGGCGGTTCGTTCCT
CCTCGTCCGCCTGCAGGCCAAGACCGGGGGCTTTGTGCGTTCCACCGCCG
ACGGCAATGTCTCGGCGGCGGCCGCCGCGGCACGTGCCGCCTCCGCATCC
CCCTCCTCCTCCTCCTCCTCCTGCTCCCCCTCCGCCGTCGCCCCCGCCTT
AAAATCCGGCGCGGAATCTGGAAGATCGTCATTGGGTTCTCTTCGTAAGG
ATACTAATCCGGGCGGCGATAGCAGCGGCGGCGGGGCTGCGATGGGAGAG
TTCAGCGTGGGGGTGGGAGGTGGGGGGGTATGTGGACGGCATGGGGGGGG
TGCAGGGGGAAAGGGCGGGGTGGGTGGGGGGGGCGGGGGTAGCGCTGATC
ACTGGATATTGATGCAAGAGGTGAGGGAGCGTTGACAGAGGAGGAGATGA
CATGAGAGGGAAAACTGTTGTTAGTGCCTAGAGTTTGTTTTTTTTTGTGT
ATGTTGGGGGCTGGGTCTCTTTTCGTTTGTTTTGTGATATGCTTGATTCA
TATATGAAGTGGAGTCCGCCGTACGATAAGGGGTCCTACTTTCCTCCCGT
ATCCATGTCGTACCTACAGGCAATGCTATACGTAGTATGACAGTGCATGG
CTCGTTGCCATGTCCAAACCAGATCTTCTTGCGGTGGGATGTCTTCTTGC
CTCTCTGCCCTCCCCCCCCCTCAATTGTTCAAAATTTGCTGGTAGTAAGG
GCACGCAGCTGTCGCTTTTACTTGGGCTATACTTACTCAGCATGAAAACA
ACCAAGTCACTCTGGTGGCCTTCATACCAACGTGAGCACGAAAACGGGTC
GACGTGTGAGTTGAGGGTTTTGTAGGAAGCCAAGTAGGTATTGTTGTCAA
GTGCTTATTTCTAGGTTATCTCGTGCCTCATGCCTGTATACAGTACACAA
TATATCAACTGATACATTCATAGAATAGTCATAGTTCACATGCTGCTCCC
GTTTCAAATAGTGTTAGAAATCCTGGTACTTTATCATGAATACCACTTCA
GCCCTCGGAAAAGTGAGAATGGAGCATTCGCAATTACTAAAGTAAGACAC
ATTATGGTGTCCCCTTTTCTCGCGAAATGCTGCGCTTTCGCCCCCCCCCC
CCCTCCAAAATGCGCCATTTCGGGCCCTTGTTGGGCGGTTCTTTGGCCAT
AACAGTCCATGAAATGATTTGTATACGCAAAAGTAGGTATCTCCGGAGAG
CCTGAAATCTGGCGCTTTGAACCGTACAGAAGATATTCAATTCTGACGTG
TTTTTCAAAAAGTTACAATGGTCAAAGCTGCCATCAGCCCTCACAAAACG
GTATTTCCATTCGAGCTCTGATCATTTTGTGCCGCTGCGCGCGCGGCTAC
GAGAGTAATCGGAGAGACGCACTTGAGACCTGGCGCGTCGATTCAAAGAG
AGGTTTTGGGAGATTCGCCCTGTAGAGCCCATTCTGTATGCGGTTGTAAC
AAGGCAGTTCACAACGTTTAAAAAAAAAAAAATTGCGCCAAATCGTGTAT
TAAAACACCCACACACTCATACAAGAAAACTATGCACCAAAACTTGTATA
GGGAGATTTGGTAAGAGATGAAGACACACAAGCGGTCCAGCCCACAGGCG
GTCGAGGGACGGAACCAGCGTTGGAGGGGAAATGCACATTATGTACGGCT
TTTCGTTATATTCCAGTCAAAATCAGTTTTCTCTATAATATCCGCCAATT
CAACATCTTTTTACTTTTTTTTTATTATGATATTTCCATTGGTCGTTCTG
AGACATTCACAGAGCGATTTTTTGTTCTTTCTAATTAGCCGAGATATAGG
CAAAAAACCGGATTTTCCTATGGGAAAACGTATTTTTCACGGAAAATCAC
CATTTCCCACAGGAAAACCCGTATTCTTCGCGATATCTCGTTGGCAGTTG
ACTTTATTCCGGAACACCTATGATGTCGATTAAAAAAAAGCAAAAACGCC
TTAAAACGTTCCTCTTGTCGATGATATTTCGAGGGACACCATGATGTGTC
GTATCGTAGTATATCTTAAACTATCATTGTTTGTTTTGGGCAAACACATA
TTTATTTATATATTTCCAAGTCTATGAATGGTTACTGCACATATCTACAG
ATGCTCGCCAGGTGATCGTATACCAGTCAAACATTCACATATACAAGTCC
TGTTTATTTTCCGGATAGTACTGTACAGATTGAATATCTCTATTTGTCCG
AGCTTTTTTGATACTCTGTGGTATATCGAGTACACTGCATATTATTCCCG
CGGTCACATAGACATTTTCCCCAACTCAAACAGATACAGTGTTCATTTTA
GATTTTTCGTATCTATTCGTGTCTATTATTCGTATTTTTCCGGGAGGTGC
ATCACTTACCTTCCCCCCCTCCAAATACGCGCAGGGGCGTGGAATCGTGT
GCTTCGAAAGCGCAGCCTACGGCAAGTATCTATGCGTGGAGCCCGACGGA
AAAGTGATCGCGGACCGTTCGTGGGATAATTCGTGGGAACAGTTTCGACT
AGAGCGCTTCTCAGAC
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Coding sequence (CDS) from alignment at H-paniculata_contig19387:1098..4413+

>mRNA_H-paniculata_contig19387.4900.1 ID=mRNA_H-paniculata_contig19387.4900.1|Name=mRNA_H-paniculata_contig19387.4900.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1740bp|location=Sequence derived from alignment at H-paniculata_contig19387:1098..4413+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGTTCGCTACCTTGGGAAGGCTTTCTGTGCCGGAGATTAGGCTAGAGGC
AGAGGAGGACATGTGCAGGTACAATCGCCTGGTGCGATACTACGAAGCCC
TGGGATTCCGCCAGCCGAAAGGGTCCCGGGTGCACTACCTGCATAACAAC
GACCAACTGTTTCGCAAGGTGTTCGCTACCTTGGGAAGGCTTTCTGTGCC
GGAGATTAGGCTAGAGGCAGAGGAGGACATGTGCAGGTACAATCGCCTGG
TGCGATACTACGAAGCCCTGGGATTCCGCCAGCCGAAAGGGTCCCGGGTG
CACTACCTGCATAACAACGACCAACTGTTTCGCAAGGTACCCATGCGGCG
ACCGCTAGCACCGACACTACCTCCGAGAGCCCGCCGATCGAATGGCCTGG
CGGTCCGCGGCGGTTCGTTCCTCCTCGTCCGCCTGCAGGCCAAGACCGGG
GGCTTTGTGCGTTCCACCGCCGACGGCAATGTCTCGGCGGCGGCCGCCGC
GGCACGTGCCGCCTCCGCATCCCCCTCCTCCTCCTCCTCCTCCTGCTCCC
CCTCCGCCGTCGCCCCCGCCTTAAAATCCGGCGCGGAATCTGGAAGATCG
TCATTGGGTTCTCTTCGTAAGGATACTAATCCGGGCGGCGATAGCAGCGG
CGGCGGGGCTGCGATGGGAGAGTTCAGCGTGGGGGTGGGAGGTGGGGGGG
TATGTGGACGGCATGGGGGGGGTGCAGGGGGAAAGGGCGGGGTGGGTGGG
GGGGGCGGGGGTAGCGCTGATCACTGGATATTGATGCAAGAGGTACCCAT
GCGGCGACCGCTAGCACCGACACTACCTCCGAGAGCCCGCCGATCGAATG
GCCTGGCGGTCCGCGGCGGTTCGTTCCTCCTCGTCCGCCTGCAGGCCAAG
ACCGGGGGCTTTGTGCGTTCCACCGCCGACGGCAATGTCTCGGCGGCGGC
CGCCGCGGCACGTGCCGCCTCCGCATCCCCCTCCTCCTCCTCCTCCTCCT
GCTCCCCCTCCGCCGTCGCCCCCGCCTTAAAATCCGGCGCGGAATCTGGA
AGATCGTCATTGGGTTCTCTTCGTAAGGATACTAATCCGGGCGGCGATAG
CAGCGGCGGCGGGGCTGCGATGGGAGAGTTCAGCGTGGGGGTGGGAGGTG
GGGGGGTATGTGGACGGCATGGGGGGGGTGCAGGGGGAAAGGGCGGGGTG
GGTGGGGGGGGCGGGGGTAGCGCTGATCACTGGATATTGATGCAAGAGGG
AGATTTGGTAAGAGATGAAGACACACAAGCGGTCCAGCCCACAGGCGGTC
GAGGGACGGAACCAGCGTTGGAGGGGAAATGCACATTATGTACGGCTTTT
CGTTATATTCCAGGAGATTTGGTAAGAGATGAAGACACACAAGCGGTCCA
GCCCACAGGCGGTCGAGGGACGGAACCAGCGTTGGAGGGGAAATGCACAT
TATGTACGGCTTTTCGTTATATTCCAGGGCGTGGAATCGTGTGCTTCGAA
AGCGCAGCCTACGGCAAGTATCTATGCGTGGAGCCCGACGGAAAAGTGAT
CGCGGACCGTTCGTGGGATAATTCGTGGGAACAGTTTCGACTAGAGCGCT
TCTCAGACGGGCGTGGAATCGTGTGCTTCGAAAGCGCAGCCTACGGCAAG
TATCTATGCGTGGAGCCCGACGGAAAAGTGATCGCGGACCGTTCGTGGGA
TAATTCGTGGGAACAGTTTCGACTAGAGCGCTTCTCAGAC
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