mRNA_H-paniculata_contig19384.4898.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19384.4898.1
Unique NamemRNA_H-paniculata_contig19384.4898.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig19384.4898.1 vs. uniprot
Match: D8LCB5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCB5_ECTSI)

HSP 1 Score: 389 bits (999), Expect = 3.460e-133
Identity = 183/221 (82.81%), Postives = 205/221 (92.76%), Query Frame = 1
Query:    1 GPRPAVTTFQQLNAPPVVPEGFEGWNEVMDTWGNKMIGALEVVARLCAIGLGLEADAITSLMHEGPHLLAPTGSDFNKYDSLGTVLAGFHYDLNLLTIHGKSRFPGLSVWLRDGRRRQVSVPDGCLLVQAGKQLERLTGGHVLAGFHEVAVSEATVETIGKRRQEGASLWRISSTCFGHVASDKVLRPLGSFATEEALANYPPISAGDMVQEELRAINLAA 663
            GPRPAVT +QQLN PPVVPEGFE W+ +MD WGNKMIGALE V+RLCAIGLGL+ +AI++LMHEGPHLLAPTGS+F+K+DS GTVLAG+HYD NLLTIHGKSR+PGLSVWLRDGR+  VSVPDGCLLVQAGKQLERLTGGHVLAGFHEVAVS+AT+ET+ KR+QEG SLWRISSTCFGHVASD+VLRPLG FATEEALA YP I+AGDM+QEEL+AINLAA
Sbjct:  123 GPRPAVTKYQQLNPPPVVPEGFENWSTIMDAWGNKMIGALETVSRLCAIGLGLDEEAISTLMHEGPHLLAPTGSNFDKFDSAGTVLAGYHYDFNLLTIHGKSRYPGLSVWLRDGRKMPVSVPDGCLLVQAGKQLERLTGGHVLAGFHEVAVSQATIETMRKRKQEGQSLWRISSTCFGHVASDQVLRPLGKFATEEALAQYPSITAGDMMQEELKAINLAA 343          
BLAST of mRNA_H-paniculata_contig19384.4898.1 vs. uniprot
Match: A0A1Y1HUE2_KLENI (2OG-FeII_Oxy domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HUE2_KLENI)

HSP 1 Score: 303 bits (776), Expect = 7.300e-99
Identity = 145/219 (66.21%), Postives = 171/219 (78.08%), Query Frame = 1
Query:    1 GPRPAVTTFQQLNAPPVVPEGFEGWNEVMDTWGNKMIGALEVVARLCAIGLGLEADAITSLMHEGPHLLAPTGSDFNKYDSLGTVLAGFHYDLNLLTIHGKSRFPGLSVWLRDGRRRQVSVPDGCLLVQAGKQLERLTGGHVLAGFHEVAVSEATVETIGKRRQEGASLWRISSTCFGHVASDKVLRPLGSFATEEALANYPPISAGDMVQEELRAINL 657
            GPRP  T FQ+LNA PV+P GF  W +VM+TWG KMI A+EVVA + AIG GLE DAIT+LMH+GPHLLAPTGSD ++Y   GTV AG+HYDLN++TIHGKSRFPGL +WLRDG R  V VPDGCLL+QAGKQLE LTGG   AG HEVAVSE T++ + + R+EG SLWR+SST FGH+ASD  L+PLG FA       YPPI+AG+ V+ EL AINL
Sbjct:  138 GPRPGKTRFQELNAEPVIPPGFPEWADVMNTWGRKMIAAVEVVAEMLAIGFGLERDAITNLMHQGPHLLAPTGSDLSRYGK-GTVFAGYHYDLNVMTIHGKSRFPGLFIWLRDGTRVPVKVPDGCLLLQAGKQLEWLTGGECKAGMHEVAVSEQTLQAVERARREGRSLWRVSSTVFGHIASDANLQPLGHFADSPTAHLYPPIAAGEFVEAELSAINL 355          
BLAST of mRNA_H-paniculata_contig19384.4898.1 vs. uniprot
Match: A0A0A9IS10_ARUDO (Uncharacterized protein n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9IS10_ARUDO)

HSP 1 Score: 292 bits (748), Expect = 2.290e-96
Identity = 135/219 (61.64%), Postives = 167/219 (76.26%), Query Frame = 1
Query:    1 GPRPAVTTFQQLNAPPVVPEGFEGWNEVMDTWGNKMIGALEVVARLCAIGLGLEADAITSLMHEGPHLLAPTGSDFNKYDSLGTVLAGFHYDLNLLTIHGKSRFPGLSVWLRDGRRRQVSVPDGCLLVQAGKQLERLTGGHVLAGFHEVAVSEATVETIGKRRQEGASLWRISSTCFGHVASDKVLRPLGSFATEEALANYPPISAGDMVQEELRAINL 657
            GPRP  T F++LN+ PV+PEG   W E MD+WG+KMI A+EVVA + A+G GL  DA TSLM EGPHLLAPTGSD  ++ S GTV AGFHYDLN LTIHG+SRFPGL++WLR+G++ +V VP GCLL+Q+GKQLE LTGG  LAG HEV V++ T+E I   +++  SLWR+SST F H+ASD VL+PLG FA      +YPPI AGD V++EL  INL
Sbjct:   31 GPRPVNTRFKELNSEPVIPEGLPEWKETMDSWGSKMISAIEVVAEMAAVGFGLPKDAFTSLMKEGPHLLAPTGSDLQRHGSEGTVFAGFHYDLNFLTIHGRSRFPGLNIWLRNGKKMEVKVPVGCLLIQSGKQLEWLTGGECLAGMHEVVVTKRTLEAIALGKEQNRSLWRVSSTLFAHIASDAVLKPLGHFAETPNAHSYPPICAGDYVEQELSVINL 249          
BLAST of mRNA_H-paniculata_contig19384.4898.1 vs. uniprot
Match: A0A804JJZ2_MUSAM ((wild Malaysian banana) hypothetical protein n=1 Tax=Musa acuminata subsp. malaccensis TaxID=214687 RepID=A0A804JJZ2_MUSAM)

HSP 1 Score: 295 bits (756), Expect = 4.980e-96
Identity = 135/219 (61.64%), Postives = 167/219 (76.26%), Query Frame = 1
Query:    1 GPRPAVTTFQQLNAPPVVPEGFEGWNEVMDTWGNKMIGALEVVARLCAIGLGLEADAITSLMHEGPHLLAPTGSDFNKYDSLGTVLAGFHYDLNLLTIHGKSRFPGLSVWLRDGRRRQVSVPDGCLLVQAGKQLERLTGGHVLAGFHEVAVSEATVETIGKRRQEGASLWRISSTCFGHVASDKVLRPLGSFATEEALANYPPISAGDMVQEELRAINL 657
            GPRPA T FQ+LN+ PV+PEGF  W E MD+WG+KMI A+EVVA + AIG GL+ DA TSLM +GPHLLAPTGSD  ++ SLGTV AG+HYDLN LTIHG+SRFPGLS+WLR+G++ +V VP GCLL+Q G Q+E LTGG  LAG HEV V+  T+E I   +Q+  S+WR+SST F H+ASD +L+PLG FA     + YPP+ AGD V+ EL  INL
Sbjct:  139 GPRPANTRFQELNSEPVIPEGFPEWKETMDSWGSKMIAAIEVVAEMAAIGFGLDKDAFTSLMKQGPHLLAPTGSDLQRHGSLGTVFAGYHYDLNFLTIHGRSRFPGLSIWLRNGQKMEVKVPVGCLLIQTGMQIEWLTGGKCLAGMHEVTVTNRTLEAIELAKQQNLSIWRVSSTLFAHIASDAILKPLGHFAETPVASKYPPMCAGDFVERELGVINL 357          
BLAST of mRNA_H-paniculata_contig19384.4898.1 vs. uniprot
Match: W2XKW3_PHYPR (2OG-FeII_Oxy domain-containing protein n=1 Tax=Phytophthora parasitica CJ01A1 TaxID=1317063 RepID=W2XKW3_PHYPR)

HSP 1 Score: 291 bits (744), Expect = 5.970e-96
Identity = 138/219 (63.01%), Postives = 168/219 (76.71%), Query Frame = 1
Query:    1 GPRPAVTTFQQLNAPPVVPEGFEGWNEVMDTWGNKMIGALEVVARLCAIGLGLEADAITSLMHEGPHLLAPTGSDFNKYDSLGTVLAGFHYDLNLLTIHGKSRFPGLSVWLRDGRRRQVSVPDGCLLVQAGKQLERLTGGHVLAGFHEVAVSEATVETIGKRRQEGASLWRISSTCFGHVASDKVLRPLGSFATEEALANYPPISAGDMVQEELRAINL 657
            G RPA T F++LNA PVVP+ F  W  VM+ WG KM+ A+  +  + A+GLGLE DA+   +  GPHLLAPTGS+FN ++ L  VLA +HYDLNLLTIHGKSRFPGL +WLRDG R  V +PDGCLLVQAGKQ+E LTGG+V AGFHEV V+E+T++TI +R++EG SLWR+SST F H ASDK L PLG FAT +ALA YPPI AG+ V EEL  I+L
Sbjct:   15 GERPADTKFEELNAEPVVPKKFPEWESVMNMWGGKMLDAITDLVEIVALGLGLEKDALVDRIKYGPHLLAPTGSNFNVFNQLNDVLAAYHYDLNLLTIHGKSRFPGLYIWLRDGTRTAVKIPDGCLLVQAGKQMEYLTGGYVQAGFHEVVVAESTLDTIAQRKKEGKSLWRVSSTLFSHTASDKTLVPLGPFATPDALAKYPPILAGNQVLEELSQIDL 233          
BLAST of mRNA_H-paniculata_contig19384.4898.1 vs. uniprot
Match: A0A2G5DYF8_AQUCA (Uncharacterized protein n=2 Tax=Thalictroideae TaxID=1463137 RepID=A0A2G5DYF8_AQUCA)

HSP 1 Score: 295 bits (755), Expect = 6.830e-96
Identity = 134/219 (61.19%), Postives = 166/219 (75.80%), Query Frame = 1
Query:    1 GPRPAVTTFQQLNAPPVVPEGFEGWNEVMDTWGNKMIGALEVVARLCAIGLGLEADAITSLMHEGPHLLAPTGSDFNKYDSLGTVLAGFHYDLNLLTIHGKSRFPGLSVWLRDGRRRQVSVPDGCLLVQAGKQLERLTGGHVLAGFHEVAVSEATVETIGKRRQEGASLWRISSTCFGHVASDKVLRPLGSFATEEALANYPPISAGDMVQEELRAINL 657
            GPRP+ T FQ+LN+ PVVPEGF  W E MD+WG KM+ A+E VA + AIG GLE DA TSLM +GPHLLAPTGS+  +Y  LGTV AG+HYDLN LTIHG+SRFPGL++WLR+G++ +V VP GCLL+Q GKQLE LT G  LAG HEV V+  T++ I   +Q+  SLWR+SST F H+ASD +L+PLG FA     ANYPP+ AG+ V++EL  INL
Sbjct:  140 GPRPSNTRFQELNSEPVVPEGFPEWKETMDSWGYKMVSAIEAVAEMAAIGFGLERDAFTSLMQKGPHLLAPTGSNLQRYGQLGTVFAGYHYDLNFLTIHGRSRFPGLNIWLRNGQKVEVKVPVGCLLIQTGKQLEWLTAGECLAGMHEVVVTNRTIDAIESAKQQSRSLWRVSSTLFAHIASDSILKPLGHFAESPLAANYPPMCAGEFVEQELAVINL 358          
BLAST of mRNA_H-paniculata_contig19384.4898.1 vs. uniprot
Match: A0A833QX35_9POAL (Uncharacterized protein n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833QX35_9POAL)

HSP 1 Score: 296 bits (759), Expect = 8.770e-96
Identity = 141/240 (58.75%), Postives = 174/240 (72.50%), Query Frame = 1
Query:    1 GPRPAVTTFQQLNAPPVVPEGFEGWNEVMDTWGNKMIGALEVVARLCAIGLGLEADAITSLMHEGPHLLAPTGSDFNKYDSLGTVLAGFHYDLNLLTIHGKSRFPGLSVWLRDGRRRQVSVPDGCLLVQAGKQLERLTGGHVLAGFHEVAVSEATVETIGKRRQEGASLWRISSTCFGHVASDKVLRPLGSFATEEALANYPPISAGDMVQEELRAINLAAS*PSGMHLIPPEADISSRP 720
            GPRP+ T F++LNA PV+P+GF  W E MD WG+KMI A+EVVA + AIG GL  DA TSLM+ GPHLLAPTGSD  K+ S GTV AGFHYDLN LTIHG+SRFPGL++W+R+G++ +V VP GCLL+Q GKQLE LTGG  LAG HEV V+  T+E I + RQE  SLWR+SST FGH+ASD +L+PLG F      +NYPPI  G+ V++EL  INL      G+ L+    D+   P
Sbjct:  135 GPRPSTTRFKELNAEPVIPDGFPEWKETMDFWGSKMISAIEVVAEMAAIGFGLPKDAFTSLMNLGPHLLAPTGSDLKKHGSEGTVFAGFHYDLNFLTIHGRSRFPGLNIWVRNGQKMEVKVPLGCLLIQTGKQLEWLTGGECLAGMHEVVVTNRTLEVIERARQENRSLWRVSSTLFGHIASDAMLKPLGQFTEAPLASNYPPIYTGEYVEQELSLINL-----KGVQLLSNFGDLIGEP 369          
BLAST of mRNA_H-paniculata_contig19384.4898.1 vs. uniprot
Match: A0A1B6Q2Z9_SORBI (Uncharacterized protein n=3 Tax=Sorghum bicolor TaxID=4558 RepID=A0A1B6Q2Z9_SORBI)

HSP 1 Score: 294 bits (753), Expect = 1.170e-95
Identity = 136/219 (62.10%), Postives = 168/219 (76.71%), Query Frame = 1
Query:    1 GPRPAVTTFQQLNAPPVVPEGFEGWNEVMDTWGNKMIGALEVVARLCAIGLGLEADAITSLMHEGPHLLAPTGSDFNKYDSLGTVLAGFHYDLNLLTIHGKSRFPGLSVWLRDGRRRQVSVPDGCLLVQAGKQLERLTGGHVLAGFHEVAVSEATVETIGKRRQEGASLWRISSTCFGHVASDKVLRPLGSFATEEALANYPPISAGDMVQEELRAINL 657
            GPRPA T F++LN+ PV+PEG   W E MD+WG+KMI A+EVVA + AIG GL  DA TSLM EGPHLLAPTGSD  ++ S GTV AGFHYDLN LTIHG+SRFPGL++WLR+G++ +V VP GCLL+Q+GKQLE LTGG  LAG HEV VS+ T++ I   +++  SLWR+SST F H+ASD +L+PLG FA      +YPPI AGD V++EL  INL
Sbjct:  134 GPRPANTRFKELNSEPVIPEGLPEWKETMDSWGSKMISAIEVVAEMAAIGFGLSKDAFTSLMKEGPHLLAPTGSDLQRHGSEGTVFAGFHYDLNFLTIHGRSRFPGLNIWLRNGKKMEVKVPVGCLLIQSGKQLEWLTGGDCLAGMHEVVVSKRTLDAIALAKEQNRSLWRVSSTLFAHIASDAILKPLGHFAEAPDAHSYPPICAGDYVEQELSVINL 352          
BLAST of mRNA_H-paniculata_contig19384.4898.1 vs. uniprot
Match: UPI001CB8DFF4 (uncharacterized protein LOC122581816 n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB8DFF4)

HSP 1 Score: 294 bits (752), Expect = 1.370e-95
Identity = 136/222 (61.26%), Postives = 166/222 (74.77%), Query Frame = 1
Query:    1 GPRPAVTTFQQLNAPPVVPEGFEGWNEVMDTWGNKMIGALEVVARLCAIGLGLEADAITSLMHEGPHLLAPTGSDFNKYDSLGTVLAGFHYDLNLLTIHGKSRFPGLSVWLRDGRRRQVSVPDGCLLVQAGKQLERLTGGHVLAGFHEVAVSEATVETIGKRRQEGASLWRISSTCFGHVASDKVLRPLGSFATEEALANYPPISAGDMVQEELRAINLAAS 666
            GPRP+ T FQ+LN+ PV+PEGF  W E MDTWG+KMI A+EVVA + AIG GL  DA T LM +GPHLLAPTGS+  ++   GTV AG+HYDLN LTIHG+SRFPGLS+WLR+G++ +V VP GCLL+Q GKQ+E LT G  +AG HEV VS+ T++ I K  QE  SLWR+SST F H+ASD VL+PLG FA       YPPI AG+ V++EL AINL  S
Sbjct:  127 GPRPSTTRFQELNSEPVIPEGFPEWKETMDTWGSKMISAIEVVAEMAAIGFGLSKDAFTGLMKQGPHLLAPTGSNLQRHGKEGTVFAGYHYDLNFLTIHGRSRFPGLSIWLRNGKKVEVKVPVGCLLIQTGKQIEWLTAGDCIAGMHEVVVSKRTIDAINKASQENRSLWRVSSTLFSHIASDAVLKPLGHFAQLPLADKYPPICAGEYVEQELSAINLKGS 348          
BLAST of mRNA_H-paniculata_contig19384.4898.1 vs. uniprot
Match: A0A1S2YWB9_CICAR (uncharacterized protein LOC101510204 n=4 Tax=IRL clade TaxID=2233839 RepID=A0A1S2YWB9_CICAR)

HSP 1 Score: 293 bits (751), Expect = 1.880e-95
Identity = 133/219 (60.73%), Postives = 166/219 (75.80%), Query Frame = 1
Query:    1 GPRPAVTTFQQLNAPPVVPEGFEGWNEVMDTWGNKMIGALEVVARLCAIGLGLEADAITSLMHEGPHLLAPTGSDFNKYDSLGTVLAGFHYDLNLLTIHGKSRFPGLSVWLRDGRRRQVSVPDGCLLVQAGKQLERLTGGHVLAGFHEVAVSEATVETIGKRRQEGASLWRISSTCFGHVASDKVLRPLGSFATEEALANYPPISAGDMVQEELRAINL 657
            GPRP++T FQ+LNA PV+PEGF  W E MD+WG KMI A+EVVA + AIG GL  DA TSLM  GPHLLAPTGSD  KY+  GT+ AG+HYDLN LTIHG+SRFPGL++WL++G++ QV VP GCLL+Q GKQ+E LTGG  +AG HEV  +  T++ I   +++  SLWR+SST F H+ASD VL+PLG FA     + YPPISAG+ V++EL  INL
Sbjct:  129 GPRPSITRFQELNAEPVIPEGFPEWKETMDSWGYKMIAAIEVVAEMAAIGFGLPKDAFTSLMKLGPHLLAPTGSDLEKYNQEGTIFAGYHYDLNFLTIHGRSRFPGLNIWLKNGQKVQVKVPVGCLLIQTGKQIEWLTGGDCIAGMHEVVATNKTIDAINAAKEQKRSLWRVSSTLFAHIASDAVLKPLGQFAESPQASKYPPISAGEYVEQELAVINL 347          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19384.4898.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCB5_ECTSI3.460e-13382.81Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A1Y1HUE2_KLENI7.300e-9966.212OG-FeII_Oxy domain-containing protein n=1 Tax=Kle... [more]
A0A0A9IS10_ARUDO2.290e-9661.64Uncharacterized protein n=1 Tax=Arundo donax TaxID... [more]
A0A804JJZ2_MUSAM4.980e-9661.64(wild Malaysian banana) hypothetical protein n=1 T... [more]
W2XKW3_PHYPR5.970e-9663.012OG-FeII_Oxy domain-containing protein n=1 Tax=Phy... [more]
A0A2G5DYF8_AQUCA6.830e-9661.19Uncharacterized protein n=2 Tax=Thalictroideae Tax... [more]
A0A833QX35_9POAL8.770e-9658.75Uncharacterized protein n=1 Tax=Carex littledalei ... [more]
A0A1B6Q2Z9_SORBI1.170e-9562.10Uncharacterized protein n=3 Tax=Sorghum bicolor Ta... [more]
UPI001CB8DFF41.370e-9561.26uncharacterized protein LOC122581816 n=1 Tax=Erige... [more]
A0A1S2YWB9_CICAR1.880e-9560.73uncharacterized protein LOC101510204 n=4 Tax=IRL c... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19384contigH-paniculata_contig19384:132..4701 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score343.2
Seed ortholog evalue8e-92
Seed eggNOG ortholog2880.D8LCB5
Hectar predicted targeting categoryother localisation
EggNOG free text desc.dioxygenase activity
EggNOG OGs2QR0G@2759,COG3491@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size826
Cds size585
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19384.4898.1prot_H-paniculata_contig19384.4898.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19384 289..4617 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929475.2663178-UTR-H-paniculata_contig19384:131..2881622929475.2663178-UTR-H-paniculata_contig19384:131..288Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19384 132..288 -
1691480877.680662-UTR-H-paniculata_contig19384:131..2881691480877.680662-UTR-H-paniculata_contig19384:131..288Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19384 132..288 -
1622929475.4216273-UTR-H-paniculata_contig19384:4617..47011622929475.4216273-UTR-H-paniculata_contig19384:4617..4701Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19384 4618..4701 -
1691480877.7806816-UTR-H-paniculata_contig19384:4617..47011691480877.7806816-UTR-H-paniculata_contig19384:4617..4701Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19384 4618..4701 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929475.2944436-CDS-H-paniculata_contig19384:288..4051622929475.2944436-CDS-H-paniculata_contig19384:288..405Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19384 289..405 -
1691480877.700943-CDS-H-paniculata_contig19384:288..4051691480877.700943-CDS-H-paniculata_contig19384:288..405Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19384 289..405 -
1622929475.3157058-CDS-H-paniculata_contig19384:1583..16911622929475.3157058-CDS-H-paniculata_contig19384:1583..1691Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19384 1584..1691 -
1691480877.715438-CDS-H-paniculata_contig19384:1583..16911691480877.715438-CDS-H-paniculata_contig19384:1583..1691Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19384 1584..1691 -
1622929475.3286724-CDS-H-paniculata_contig19384:2156..22561622929475.3286724-CDS-H-paniculata_contig19384:2156..2256Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19384 2157..2256 -
1691480877.732855-CDS-H-paniculata_contig19384:2156..22561691480877.732855-CDS-H-paniculata_contig19384:2156..2256Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19384 2157..2256 -
1622929475.3410943-CDS-H-paniculata_contig19384:2665..27921622929475.3410943-CDS-H-paniculata_contig19384:2665..2792Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19384 2666..2792 -
1691480877.7474358-CDS-H-paniculata_contig19384:2665..27921691480877.7474358-CDS-H-paniculata_contig19384:2665..2792Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19384 2666..2792 -
1622929475.3700309-CDS-H-paniculata_contig19384:3747..38591622929475.3700309-CDS-H-paniculata_contig19384:3747..3859Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19384 3748..3859 -
1691480877.7593818-CDS-H-paniculata_contig19384:3747..38591691480877.7593818-CDS-H-paniculata_contig19384:3747..3859Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19384 3748..3859 -
1622929475.3988664-CDS-H-paniculata_contig19384:4596..46171622929475.3988664-CDS-H-paniculata_contig19384:4596..4617Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19384 4597..4617 -
1691480877.7704978-CDS-H-paniculata_contig19384:4596..46171691480877.7704978-CDS-H-paniculata_contig19384:4596..4617Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19384 4597..4617 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19384.4898.1

>prot_H-paniculata_contig19384.4898.1 ID=prot_H-paniculata_contig19384.4898.1|Name=mRNA_H-paniculata_contig19384.4898.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=195bp
MDTWGNKMIGALEVVARLCAIGLGLEADAITSLMHEGPHLLAPTGSDFNK
YDSLGTVLAGFHYDLNLLTIHGKSRFPGLSVWLRDGRRRQVSVPDGCLLV
QAGKQLERLTGGHVLAGFHEVAVSEATVETIGKRRQEGASLWRISSTCFG
HVASDKVLRPLGSFATEEALANYPPISAGDMVQEELRAINLAAS*
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mRNA from alignment at H-paniculata_contig19384:132..4701-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19384.4898.1 ID=mRNA_H-paniculata_contig19384.4898.1|Name=mRNA_H-paniculata_contig19384.4898.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4570bp|location=Sequence derived from alignment at H-paniculata_contig19384:132..4701- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTCCGCGACCGGCTGTGACCACGTTCCAGCAGCTAAACGCACCCCCGGT CGTGCCGGAAGGGTTCGAAGGTTGGAATGAAGTCATGGACACCTGGGGAA ACAAGGTACAGTGCAAAACGCCAGAAATAATATTGCTCGTACGCCGTATA TGTTCAATCCTGTTCTTTACGGAGGGTTCGTCGTCAAGAAACAAGTGGAG TATAGGGATGGACCTCTCGACGTACGGTAGTTTTCGCAGGACTACAGGTG GCGTGTTAAAAAACAAAACAAAACAATGTGTGTTCCTGTTTTATCTCTCG TATAGAGAGACAAAGAACAGTGTGACCGAAGGAAAGGTGGACTTGCGAAA GGACTCTCGTTTGTTGTGTGTGGTGATGATACTGCTGCCGACCGGCGTTG GCTTTGGGGAAAGCAGCTAGGAAGGGCTGCTTCAAAACGGTGGTGTTCTA AAATTGTAGGAATTTCTCGTGGGTCGAGGCAAAAACGCACTTCAACTCGC AGGACGCCGAACAGTTTCCGTCATGCCGTTCACATACCGTCTGGTATTTC GCACGGGAAAGTACTAGTTATTCTATTTTTTGATGCACGCTTTTACACGT TGTATTATTGCCCAGGTCAAGTGCCTTTTTGACTGCCCTGAGCATGCCGC GGACGTAACAATATTGTCTCTGGTTATCTTTGTAACCTTGTTTTTTGCTC GACGGCCGGCGAGCCAGGTCCGTCATGCACACGTATGCGACGGATCAGTG ATGCAGCAAAACCACCGAGCAAAACCGTCAACATGTTCTGATGCGGTGCT CTTGCTCTGCCTCGCCATGCTGGTCCGGTGACGATTTATAAGATGATAGG AGCCTTGGAGGTGGTGGCCCGCTTGTGCGCTATTGGTCTAGGTCTCGAGG CAGACGCAATTACGTCCCTAATGCACGAGGGTCCCCACCTGCTGGCACCG ACAGGTGAGAAGGAAAGGCGCAAAAGTCCTTCAACCCCGGAGTCAGGGCG GGAGGGAGATAAAGAGATAATATATACATAGACACACGTTGGTAGGTGGT TTCCTCCAATTTTTTGTAGTATCAGTCTTTTCCTGATGCTGCCGAAGCCT CGATGAGTGGCGTCGGTTTATTTTTTCCTTCCTGTATTTTTCAGGTTGTC TACAGGGTGGTGATGAAGGTCCAATGGGATTTGCGTGGGAGACTAAGAAT CTTCCCCGCAAAGTGCTACTGTCGGTAGGTCTAAAGGACCGAACAGTATC CATATCTTCGTATTGTGCATCTGTGACGTTCGATCTACGACGGTATAGAA ACATGGTTTTCACGTACATGGGGCACCAATATGCTGACCGTTGCTATTTT TTTGGTGAAACGACGAAACAACGTATACGTGGGGTCCATGTTTCTGGCGA GATGGTGGTAGCTGTCGAGATGTGCTGCCGGAAGATCGCTGTGCGTCGGT CAGTCCGTCCTTGGTTGCCGATTCGCTTCGTGGCTGTGCCCGCTTCTGCT GTGGAAAAGTGGAACACGGATTTTTCACAGTCTAGTTATTGAGAGAACGA GCGAGCGCGCGAGAGAAAGAGTAGCGAGTCGCTCTTTTCTTCTTTTTTTT TTCCATGGGCGGGAACTCGCTCCCTTCGTATTTTGTATGGTTTTCTAGGT GTGTGTAATGCAAAGGTGTTGCTAATGTGGGTATGTACGTTTCTTGCGCA AGCGCAAAGGTGTACAGAGGCAATCGGCTGACGGGTGCAGAATAACAGCG CCCAGAGCTTTTGCTAAAGTCTTTCTTACACACCATGTACTCCGCGAGTG TATCTATATCCGTGTTACGCGTTCAAATTCGAACGTACGGGTTGGGCAAT CCGCTTGTGTTCCACTCCTCTGTATCTTGCTGGCGTTTCTATGTATTCAT ACGCACCAGGGTCCGACTTCAATAAGTACGACTCCTTGGGAACGGTACTT GCCGGATTTCACTATGATTTGAATCTTCTCACCATCCACGGGAAAAGTCG ATTTCCAGGGCTGTCCGTGTGGCTTCGAGACGGCAGGTGGGTCACTAGCG TGCCTCTTCGTCGTTCAGTTTATTTCGTGTCAACGTACATGTACTCCAAT CTCGTAAATAGTCATGCTTCCGTTGTTGTTGTTGTTGTTACTACTATTGG TGCTTTAGCTACTGCTGCTGCTGCTGCTGCACCTCTAAAACGGTATGTTG CGCATATCGGCACGACGAAATGTGCCAGTAGAAACTACAGTACCGCTCCA ACAATAATCATGGCGTGTTTCTTACCGAAACCAAAATATATCTATGGCGT TTGCAGTTTAACCCAGGGGTGTTGTGGTGGTGTCACCGTGATAATCCCGG CGCCTCCTTCAACCACGAAGGCGTAAGTGTTGGTAAGCACATGCGTGGGT TGTTCGCTGCTGCGGTCGTCTCTTTGCTGCTGTGCATGTATGCAGGCGGC GACAAGTCTCGGTGCCGGACGGGTGCCTTCTGGTGCAGGCGGGAAAGCAG CTGGAACGACTTACCGGAGGGCACGTGCTCGCGGGCTTTCACGAGGTATA CGTGCCCGTTGTACGAGATGGTTGTGTTCGCCTCGTTTTGTTCTTCTCTG CCTCTCACAATGCGCGACGGAAACATCCGTACCATCGTCACCCTGCAACA GAGTATACCACGTGGTAGTGCTCATATAGTCAAGAGACACGTGCGCACCT TCTCTCGAAAGAGCAATGAATGAAAGATAGTACACCTCGATACTTGAAAC AGCTTGCCGTATAGATGAATGTGCCAATGTCGATACACCGTAGCCTCACC CCCCTCCTGAAGAAGCTCCGTCCTCCCAATGATGCGTTGTCAACGGTTCG ACAATTACGGCATGCGAAACATGAGTGAGTACCTCCCCCCCCCCCTTTAA ACAAAAACGCAACCTGAACTAAATAGAACACACTCGTGCGAAAACTGTAT TTTGCGAGGTACGTTGAATTCACCTACATACATGAATATTTTAACGTAAA ATTGGAGCAGGTGGCCGTATCGGAGGCCACTGTCGAGACGATAGGGAAAA GGCGGCAAGAGGGGGCGTCTCTGTGGAGGATTTCATCTACTTGCTTCGGG CACGTGGCGTCTGACAAGGTTTGTTTCGTTGTTCGCCTTGCACCCATGTT TCCATAGCGCTCACTTTTGTGTCTCCCATAATCACTCCCGCCCTACACTG TTTCATGTGACGCAATAGTAACATGACAAGTTTGCGGTGGGCTCGTAAAA ACTAAATCATGGCAGTACTTGAAACGAATATATCATTTTGCGTCATCTTC TCTCAATTTTTCTGTCGTTAGATTTGATAGGAAAGTAGCAGTAGGGCGTA CGTTCGAAAGCCTCTCCCTGACTCGAACGGATTTTGCAATTGATGTGGTG AATCCGCCACAAGTTCAAGTTTTCAACGAGTCCTGTGTTTTTACGAAAAA CAAATTGCGAAAATGGTGTTCTATTTACTGTGATCGTGAGTGACTTCTAT TTGAAGAATGCAAGCAGTTCCCCCGCTTTTTTTTTTTTGCTGGTAAAATT AGATGAAGATGGTTGTGTTGATGTATAGCATGGAACCACGTACTGTTGTC AAGAAGCACAGAGTGCAGCACAGGTGGACGAAGGAACAGGTGAATGCGAG ATGTCTGCTGTAATAAAGCCAATGCTGGAAAAAAACCCTCGACACAGGAA GGCGACGGTGCCAGAAGGTATAGAGGCGTCTCTCTCGGCCGCCCAGTCGT TTCGTTTCATCACAAGTATGACAGGCTAGCTTCTCGCAGAAAGAGGGCGC GTCCACACCGAAATCGACGCGGGTCGAGAGTTCAAGAGACTCCCACCCTG GGAACTACATGTCTTTCATCTTAGGGAGCAAGTTGCAAACAAAATGATGC TCCATTGTGCGTGGGGGTGCCGGAGAAAATGCTGACATACGTGCGGCAAG TAGGTTCTGCAGAAATGCACGCGTCCCACAGCACAACCGTGTTATAGGTT TCTAAAGAAGTGTTTTTGTACGTTCCTTTTTATTATCTCTTTTAAAATTT TTATAATTGAGCAAATCTTACACGATGATGCTCGATTATGTTACCCACCA TTCTTAGAAGTATCCCGTCCAACCCATGTACATAGTTATCAACGCTGTAT ACGTACGTGTTTTTTCGTCAATCGACGGATAATCGTTCAAAAAGTCGTTC CGTCCGAGGGGTTCGAAAATGAGTACATACGTGTCATCCAAGCTGGGTCC GTTCGCTGCCTTTGCAACGTTTTTCTAATACACAAAAAATCGGCAGGTGC TCCGCCCGCTGGGATCGTTCGCGACGGAGGAGGCTCTGGCAAATTACCCG CCGATATCAGCGGGGGATATGGTACAGGAGGAGCTGCGGGCTATTAATCT TGCCGCCAGCTGACCCTCGGGAATGCACCTCATCCCGCCCGAAGCAGATA TTTCGAGCAGACCTACTGATGATGCGATAATGGCAATAATACAGGCTACG GCGAGAGAGTAGTCCGTGTTGTAGATATCTCGCCGATCGAACGGTGGTAT GATATAGCTACAGCCAGGCT
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Coding sequence (CDS) from alignment at H-paniculata_contig19384:132..4701-

>mRNA_H-paniculata_contig19384.4898.1 ID=mRNA_H-paniculata_contig19384.4898.1|Name=mRNA_H-paniculata_contig19384.4898.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1170bp|location=Sequence derived from alignment at H-paniculata_contig19384:132..4701- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACACCTGGGGAAACAAGATGGACACCTGGGGAAACAAGATGATAGG
AGCCTTGGAGGTGGTGGCCCGCTTGTGCGCTATTGGTCTAGGTCTCGAGG
CAGACGCAATTACGTCCCTAATGCACGAGGGTCCCCACCTGCTGGCACCG
ACAGATGATAGGAGCCTTGGAGGTGGTGGCCCGCTTGTGCGCTATTGGTC
TAGGTCTCGAGGCAGACGCAATTACGTCCCTAATGCACGAGGGTCCCCAC
CTGCTGGCACCGACAGGGTCCGACTTCAATAAGTACGACTCCTTGGGAAC
GGTACTTGCCGGATTTCACTATGATTTGAATCTTCTCACCATCCACGGGA
AAAGTCGATTTCCAGGGCTGTCCGTGTGGCTTCGAGACGGCAGGGTCCGA
CTTCAATAAGTACGACTCCTTGGGAACGGTACTTGCCGGATTTCACTATG
ATTTGAATCTTCTCACCATCCACGGGAAAAGTCGATTTCCAGGGCTGTCC
GTGTGGCTTCGAGACGGCAGGCGGCGACAAGTCTCGGTGCCGGACGGGTG
CCTTCTGGTGCAGGCGGGAAAGCAGCTGGAACGACTTACCGGAGGGCACG
TGCTCGCGGGCTTTCACGAGGCGGCGACAAGTCTCGGTGCCGGACGGGTG
CCTTCTGGTGCAGGCGGGAAAGCAGCTGGAACGACTTACCGGAGGGCACG
TGCTCGCGGGCTTTCACGAGGTGGCCGTATCGGAGGCCACTGTCGAGACG
ATAGGGAAAAGGCGGCAAGAGGGGGCGTCTCTGTGGAGGATTTCATCTAC
TTGCTTCGGGCACGTGGCGTCTGACAAGGTGGCCGTATCGGAGGCCACTG
TCGAGACGATAGGGAAAAGGCGGCAAGAGGGGGCGTCTCTGTGGAGGATT
TCATCTACTTGCTTCGGGCACGTGGCGTCTGACAAGGTGCTCCGCCCGCT
GGGATCGTTCGCGACGGAGGAGGCTCTGGCAAATTACCCGCCGATATCAG
CGGGGGATATGGTACAGGAGGAGCTGCGGGCTATTAATCTTGCCGCCAGC
TGAGTGCTCCGCCCGCTGGGATCGTTCGCGACGGAGGAGGCTCTGGCAAA
TTACCCGCCGATATCAGCGGGGGATATGGTACAGGAGGAGCTGCGGGCTA
TTAATCTTGCCGCCAGCTGA
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