mRNA_H-paniculata_contig19336.4886.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19336.4886.1
Unique NamemRNA_H-paniculata_contig19336.4886.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig19336.4886.1 vs. uniprot
Match: A0A6H5JQ37_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JQ37_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 3.360e-26
Identity = 53/95 (55.79%), Postives = 68/95 (71.58%), Query Frame = 1
Query:    1 GMATAIDTLCSQAHGAKQYRVVGATFARGTLVTAFTTFPVVGTLWYYMQDILVVVGQDPNIAKGAGNFSRGYMWGMAAYAIFENLKRCLQVHTLL 285
            GM T I+ LC+QA GAK  R+VG  FARGTL+TAF   PV   LW+YM++I++  GQ  NIA   G F+R YM GMA YA++ENLKRCLQ  +++
Sbjct:   98 GMGTGIELLCAQAFGAKNNRLVGVAFARGTLLTAFLFIPV-AFLWFYMENIMLAFGQQENIAHVTGTFTRAYMLGMAPYAVYENLKRCLQAQSVV 191          
BLAST of mRNA_H-paniculata_contig19336.4886.1 vs. uniprot
Match: A0A368R9E7_SETIT (Protein DETOXIFICATION n=3 Tax=Setaria TaxID=4554 RepID=A0A368R9E7_SETIT)

HSP 1 Score: 79.7 bits (195), Expect = 2.390e-15
Identity = 41/95 (43.16%), Postives = 60/95 (63.16%), Query Frame = 1
Query:    1 GMATAIDTLCSQAHGAKQYRVVGATFARGTLVTAFTTFPVVGTLWYYMQDILVVVGQDPNIAKGAGNFSRGYMWGMAAYAIFENLKRCLQVHTLL 285
            GMA+A++TLC QA+GAKQYR VGA   R  +   F   P+   LW +M  ILV++GQDP I+ GAG +    + G+ A A+ + + + LQ  +L+
Sbjct:  103 GMASALETLCGQAYGAKQYRKVGADTYRAVVTLLFVCIPL-SLLWVFMDKILVLIGQDPMISHGAGRYLIWLIPGLFASAVIQPVTKFLQSQSLI 196          
BLAST of mRNA_H-paniculata_contig19336.4886.1 vs. uniprot
Match: A0A830AYT1_9LAMI (Protein DETOXIFICATION n=1 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830AYT1_9LAMI)

HSP 1 Score: 79.3 bits (194), Expect = 3.320e-15
Identity = 36/95 (37.89%), Postives = 60/95 (63.16%), Query Frame = 1
Query:    1 GMATAIDTLCSQAHGAKQYRVVGATFARGTLVTAFTTFPVVGTLWYYMQDILVVVGQDPNIAKGAGNFSRGYMWGMAAYAIFENLKRCLQVHTLL 285
            G++ A++TLC Q HGAK YR++G       ++T F T  +V  +W+Y   IL+++ QDP IAK AG + +  + G+ AY + +N+ R LQ  +++
Sbjct:   95 GLSGALETLCGQGHGAKMYRMLGIYLQASCIITIFFTI-IVSVIWWYSDIILILLHQDPRIAKAAGLYLKYLIPGLVAYGVLQNILRFLQTQSVV 188          
BLAST of mRNA_H-paniculata_contig19336.4886.1 vs. uniprot
Match: A0A482EW65_REHGL (Protein DETOXIFICATION n=2 Tax=Rehmannia glutinosa TaxID=99300 RepID=A0A482EW65_REHGL)

HSP 1 Score: 78.6 bits (192), Expect = 6.010e-15
Identity = 41/95 (43.16%), Postives = 62/95 (65.26%), Query Frame = 1
Query:    1 GMATAIDTLCSQAHGAKQYRVVGATFARGTLVTAFTTFPVVGTLWYYMQDILVVVGQDPNIAKGAGNFSRGYMWGMAAYAIFENLKRCLQVHTLL 285
            GM++A++TLC QA+GAKQY+ VG TFA G ++  F     V  LW Y + IL+ +GQDP+I+  AG ++   +  +  YAI ++L R LQ  +L+
Sbjct:   85 GMSSALETLCGQAYGAKQYQRVG-TFAYGAILCLFLVCIPVSLLWIYTEKILIFMGQDPSISAAAGKYAILLIPTLFPYAILQSLVRYLQTQSLI 178          
BLAST of mRNA_H-paniculata_contig19336.4886.1 vs. uniprot
Match: A0A2R6P9T7_ACTCC (Protein DETOXIFICATION n=2 Tax=Actinidia TaxID=3624 RepID=A0A2R6P9T7_ACTCC)

HSP 1 Score: 78.6 bits (192), Expect = 6.060e-15
Identity = 40/95 (42.11%), Postives = 57/95 (60.00%), Query Frame = 1
Query:    1 GMATAIDTLCSQAHGAKQYRVVGATFARGTLVTAFTTFPVVGTLWYYMQDILVVVGQDPNIAKGAGNFSRGYMWGMAAYAIFENLKRCLQVHTLL 285
            GM +A++TLC QA+GAKQY ++G    R  L    TT P+   LW+Y   IL   GQ+P I+  AGNF+R  +  + AYA+ + L R LQ   ++
Sbjct:   94 GMGSALETLCGQAYGAKQYHMLGIHTQRAMLTLLATTVPL-SLLWFYTTTILTAFGQNPEISTQAGNFNRWMIPSLFAYALLQCLNRFLQTQNIV 187          
BLAST of mRNA_H-paniculata_contig19336.4886.1 vs. uniprot
Match: A0A6P6V9G9_COFAR (Protein DETOXIFICATION n=6 Tax=Coffea TaxID=13442 RepID=A0A6P6V9G9_COFAR)

HSP 1 Score: 78.2 bits (191), Expect = 8.260e-15
Identity = 38/95 (40.00%), Postives = 60/95 (63.16%), Query Frame = 1
Query:    1 GMATAIDTLCSQAHGAKQYRVVGATFARGTLVTAFTTFPVVGTLWYYMQDILVVVGQDPNIAKGAGNFSRGYMWGMAAYAIFENLKRCLQVHTLL 285
            GM +A++TLC QA+GAKQYR++G    RG +V    +   +  +W+Y   IL+V+GQD  I+  AG F+R  + G+ AYA+ + + R LQ   ++
Sbjct:   96 GMGSALETLCGQAYGAKQYRMLGIYTQRGMIVLLVLSI-FLALIWFYTDHILIVLGQDQEISIEAGKFNRSMIPGLFAYALLQCINRFLQTQNIV 189          
BLAST of mRNA_H-paniculata_contig19336.4886.1 vs. uniprot
Match: UPI0005CA5825 (MATE efflux family protein DTX1-like n=1 Tax=Fragaria vesca subsp. vesca TaxID=101020 RepID=UPI0005CA5825)

HSP 1 Score: 78.2 bits (191), Expect = 8.380e-15
Identity = 38/90 (42.22%), Postives = 57/90 (63.33%), Query Frame = 1
Query:    1 GMATAIDTLCSQAHGAKQYRVVGATFARGTLVTAFTTFPVVGTLWYYMQDILVVVGQDPNIAKGAGNFSRGYMWGMAAYAIFENLKRCLQ 270
            GMA+A++TLC QA+GAKQY ++G    RG L     + P+   +W+Y   IL+ +GQD  I+K AG F+R  +  + AY++ + L R LQ
Sbjct:  127 GMASALETLCGQAYGAKQYHMLGVHMQRGMLTLVVVSMPL-ALIWFYTGTILIALGQDHEISKEAGTFNRWMIPSLFAYSLLQCLNRFLQ 215          
BLAST of mRNA_H-paniculata_contig19336.4886.1 vs. uniprot
Match: A0A7N0UX74_KALFE (Protein DETOXIFICATION n=2 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0UX74_KALFE)

HSP 1 Score: 77.8 bits (190), Expect = 1.130e-14
Identity = 38/95 (40.00%), Postives = 60/95 (63.16%), Query Frame = 1
Query:    1 GMATAIDTLCSQAHGAKQYRVVGATFARGTLVTAFTTFPVVGTLWYYMQDILVVVGQDPNIAKGAGNFSRGYMWGMAAYAIFENLKRCLQVHTLL 285
            GMA+A+DTLC Q++GAKQY ++G    +  L+      P+ G +W   + ILV+VGQDP I+K AG++ +  + G+ AY + + L R LQ   ++
Sbjct:  101 GMASALDTLCGQSYGAKQYHMLGIQMQKAMLILTVVGVPIAG-MWAKTEQILVLVGQDPQISKVAGHYIQFLIPGLFAYGLLQCLVRFLQTQNIV 194          
BLAST of mRNA_H-paniculata_contig19336.4886.1 vs. uniprot
Match: M1ANX6_SOLTU (TRANSPARENT TESTA 12 protein n=1 Tax=Solanum tuberosum TaxID=4113 RepID=M1ANX6_SOLTU)

HSP 1 Score: 75.9 bits (185), Expect = 1.730e-14
Identity = 38/95 (40.00%), Postives = 61/95 (64.21%), Query Frame = 1
Query:    1 GMATAIDTLCSQAHGAKQYRVVGATFARGTLVTAFTTFPVVGTLWYYMQDILVVVGQDPNIAKGAGNFSRGYMWGMAAYAIFENLKRCLQVHTLL 285
            GM++A++TLC QA+GA+QYR VG TF+   ++  F     V  LW +   +L+++GQDP+IA  AG ++   +  +  YAI ++L R LQ  +L+
Sbjct:   83 GMSSALETLCGQAYGARQYRKVG-TFSYSAIICLFLVCIPVSVLWIFTDKLLILMGQDPSIATEAGKYAIWLIPTLFPYAILQSLVRYLQAQSLI 176          
BLAST of mRNA_H-paniculata_contig19336.4886.1 vs. uniprot
Match: A0A7I4AMZ3_PHYPA (Uncharacterized protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A7I4AMZ3_PHYPA)

HSP 1 Score: 77.0 bits (188), Expect = 1.760e-14
Identity = 38/95 (40.00%), Postives = 59/95 (62.11%), Query Frame = 1
Query:    1 GMATAIDTLCSQAHGAKQYRVVGATFARGTLVTAFTTFPVVGTLWYYMQDILVVVGQDPNIAKGAGNFSRGYMWGMAAYAIFENLKRCLQVHTLL 285
            GM  A++TLC Q+ GAK Y++VG    RG +V   T  PV   +W+ M +IL+ +GQDP IA+ +G ++R  +  + AYA  + L + LQ  +L+
Sbjct:  112 GMGCALETLCGQSFGAKNYQMVGIYLQRGIIVLFLTAIPV-AAIWWNMTNILIALGQDPEIAEKSGEYARFLIPSLFAYAAIQPLVKFLQAQSLV 205          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19336.4886.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JQ37_9PHAE3.360e-2655.79Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A368R9E7_SETIT2.390e-1543.16Protein DETOXIFICATION n=3 Tax=Setaria TaxID=4554 ... [more]
A0A830AYT1_9LAMI3.320e-1537.89Protein DETOXIFICATION n=1 Tax=Phtheirospermum jap... [more]
A0A482EW65_REHGL6.010e-1543.16Protein DETOXIFICATION n=2 Tax=Rehmannia glutinosa... [more]
A0A2R6P9T7_ACTCC6.060e-1542.11Protein DETOXIFICATION n=2 Tax=Actinidia TaxID=362... [more]
A0A6P6V9G9_COFAR8.260e-1540.00Protein DETOXIFICATION n=6 Tax=Coffea TaxID=13442 ... [more]
UPI0005CA58258.380e-1542.22MATE efflux family protein DTX1-like n=1 Tax=Fraga... [more]
A0A7N0UX74_KALFE1.130e-1440.00Protein DETOXIFICATION n=2 Tax=Kalanchoe fedtschen... [more]
M1ANX6_SOLTU1.730e-1440.00TRANSPARENT TESTA 12 protein n=1 Tax=Solanum tuber... [more]
A0A7I4AMZ3_PHYPA1.760e-1440.00Uncharacterized protein n=2 Tax=Physcomitrium pate... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19336contigH-paniculata_contig19336:3988..4712 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score106.7
Seed ortholog evalue6.2e-21
Seed eggNOG ortholog2880.D7FMM8
KEGG koko:K03327
KEGG TC2.A.66.1
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004601,GO:0005575,GO:0005618,GO:0005623,GO:0005911,GO:0008150,GO:0008152,GO:0009505,GO:0009506,GO:0009636,GO:0009664,GO:0009987,GO:0016043,GO:0016209,GO:0016491,GO:0016684,GO:0030054,GO:0030312,GO:0042221,GO:0044464,GO:0045229,GO:0050896,GO:0051716,GO:0055044,GO:0055114,GO:0070887,GO:0071554,GO:0071555,GO:0071669,GO:0071840,GO:0071944,GO:0097237,GO:0098754,GO:0098869,GO:1990748
EggNOG free text desc.antiporter activity
EggNOG OGsCOG0534@1,KOG1347@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Exons2
Model size291
Cds size288
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19336.4886.1prot_H-paniculata_contig19336.4886.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19336 3988..4709 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929473.6123054-CDS-H-paniculata_contig19336:3987..41121622929473.6123054-CDS-H-paniculata_contig19336:3987..4112Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19336 3988..4112 -
1691480876.9020853-CDS-H-paniculata_contig19336:3987..41121691480876.9020853-CDS-H-paniculata_contig19336:3987..4112Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19336 3988..4112 -
1622929473.6312273-CDS-H-paniculata_contig19336:4546..47091622929473.6312273-CDS-H-paniculata_contig19336:4546..4709Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19336 4547..4709 -
1691480876.9286327-CDS-H-paniculata_contig19336:4546..47091691480876.9286327-CDS-H-paniculata_contig19336:4546..4709Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19336 4547..4709 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929473.6798012-UTR-H-paniculata_contig19336:4709..47121622929473.6798012-UTR-H-paniculata_contig19336:4709..4712Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19336 4710..4712 -
1691480876.937368-UTR-H-paniculata_contig19336:4709..47121691480876.937368-UTR-H-paniculata_contig19336:4709..4712Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19336 4710..4712 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19336.4886.1

>prot_H-paniculata_contig19336.4886.1 ID=prot_H-paniculata_contig19336.4886.1|Name=mRNA_H-paniculata_contig19336.4886.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=96bp
MATAIDTLCSQAHGAKQYRVVGATFARGTLVTAFTTFPVVGTLWYYMQDI
LVVVGQDPNIAKGAGNFSRGYMWGMAAYAIFENLKRCLQVHTLLS*
back to top

mRNA from alignment at H-paniculata_contig19336:3988..4712-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19336.4886.1 ID=mRNA_H-paniculata_contig19336.4886.1|Name=mRNA_H-paniculata_contig19336.4886.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=725bp|location=Sequence derived from alignment at H-paniculata_contig19336:3988..4712- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGATGGCGACAGCGATTGACACGCTCTGCTCCCAAGCGCACGGCGCAAA ACAGTATCGAGTCGTCGGCGCTACGTTTGCGAGAGGGACCCTTGTGACAG CCTTCACCACATTTCCAGTGGTCGGCACGCTGTGGTACTACATGCAGGAC ATCTTAGTTGTCGTGGGTGAGTTATGTAGGCAGGCCCCTATTAATCAAGG GTCAGAGAAACAGAGTGAAGCTGAGTTCAAAATTAAGTATCATGGAAGGA TAAGATTTGACGGGACAGACAGAACGCGCAAATAAGAATCATACACAGCC CAGACAGAACAGAACAGGTTTTGTGTGTTCTAGAATTGACCATGTTCTGC AATGAAATTTACTTTCAATGGATGTTCTGATAACGCTTTGGGCAAGTCAT CGTCTTTCGAAATCAAGCAATTAATAGTCTCAAAGCGGCAATGTTTTGAT CGCCCGTTGTTGTTTTTTTATGCATATGTTGTCACACCGTTTGGGTAAGG CTGTCCTGACAGCGTGGCACAACAGGTCTAGCAAGTCATTGAAATTCACC TCTCACTGTTTGTCGCTCCTTCGTCCGTTGTCTGGCGCGTTGATGGCCAG GGCAAGACCCAAACATAGCGAAGGGAGCAGGAAATTTTTCCCGGGGTTAT ATGTGGGGCATGGCAGCATACGCGATTTTCGAGAACCTCAAGCGATGCCT CCAGGTACATACACTACTGTCGTAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig19336:3988..4712-

>mRNA_H-paniculata_contig19336.4886.1 ID=mRNA_H-paniculata_contig19336.4886.1|Name=mRNA_H-paniculata_contig19336.4886.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=576bp|location=Sequence derived from alignment at H-paniculata_contig19336:3988..4712- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGACAGCGATTGACACGCTCTGCTCCCAAGCGCACGGCGCAAAACA
GTATCGAGTCGTCGGCGCTACGTTTGCGAGAGGGACCCTTGTGACAGCCT
TCACCACATTTCCAGTGGTCGGCACGCTGTGGTACTACATGCAGGACATC
TTAGTTGTCGTGGATGGCGACAGCGATTGACACGCTCTGCTCCCAAGCGC
ACGGCGCAAAACAGTATCGAGTCGTCGGCGCTACGTTTGCGAGAGGGACC
CTTGTGACAGCCTTCACCACATTTCCAGTGGTCGGCACGCTGTGGTACTA
CATGCAGGACATCTTAGTTGTCGTGGGGCAAGACCCAAACATAGCGAAGG
GAGCAGGAAATTTTTCCCGGGGTTATATGTGGGGCATGGCAGCATACGCG
ATTTTCGAGAACCTCAAGCGATGCCTCCAGGTACATACACTACTGTCGTA
GGGCAAGACCCAAACATAGCGAAGGGAGCAGGAAATTTTTCCCGGGGTTA
TATGTGGGGCATGGCAGCATACGCGATTTTCGAGAACCTCAAGCGATGCC
TCCAGGTACATACACTACTGTCGTAG
back to top