mRNA_H-paniculata_contig19322.4882.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19322.4882.1
Unique NamemRNA_H-paniculata_contig19322.4882.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig19322.4882.1 vs. uniprot
Match: A0A6H5L0D3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0D3_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 1.110e-27
Identity = 59/68 (86.76%), Postives = 61/68 (89.71%), Query Frame = 1
Query:    1 FPELSSKPYDLIVLGSGPGGEATAVQAARLGATVGVVEIKKSFGGPTGLTSKAVREAAKQINAAVKNV 204
            FP L  KPYDL+VLGSGPGGEA AVQAARLGA+V VVEIKKSFGGPTGLTSKAVREAAKQIN AV NV
Sbjct:   60 FPPLPDKPYDLVVLGSGPGGEAAAVQAARLGASVAVVEIKKSFGGPTGLTSKAVREAAKQINQAVTNV 127          
BLAST of mRNA_H-paniculata_contig19322.4882.1 vs. uniprot
Match: A0A836CAQ8_9STRA (Pyr_redox_2 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAQ8_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 4.990e-22
Identity = 47/68 (69.12%), Postives = 54/68 (79.41%), Query Frame = 1
Query:    1 FPELSSKPYDLIVLGSGPGGEATAVQAARLGATVGVVEIKKSFGGPTGLTSKAVREAAKQINAAVKNV 204
            FP++    YDL+VLGSGPGGEA A +AA+L A V VVEIK++FGGPTGLTSKAVREA KQI  AV  V
Sbjct:   12 FPDVPEDGYDLVVLGSGPGGEAIATRAAQLSARVAVVEIKRAFGGPTGLTSKAVREATKQIVQAVDQV 79          
BLAST of mRNA_H-paniculata_contig19322.4882.1 vs. uniprot
Match: W7T4Z3_9STRA (Soluble pyridine nucleotide transhydrogenase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T4Z3_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.620e-18
Identity = 47/74 (63.51%), Postives = 55/74 (74.32%), Query Frame = 1
Query:    1 FPELSSK-PYDLIVLGSGPGGEATAVQAARLGATVGVVEIKKSFGGPTGLTSKAVREAAKQINAAVKNVSEGGG 219
            FPE     PYDLIVLGSGP GE    +AA+LG  V ++EIKK+FGGPTGLTSKAVREAAK+I   +K V + GG
Sbjct:   92 FPEKEDDTPYDLIVLGSGPAGETAGCKAAQLGQKVAIIEIKKAFGGPTGLTSKAVREAAKRI---LKTVDQVGG 162          
BLAST of mRNA_H-paniculata_contig19322.4882.1 vs. uniprot
Match: A0A7S1NVB4_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NVB4_9EUGL)

HSP 1 Score: 85.5 bits (210), Expect = 3.470e-18
Identity = 42/63 (66.67%), Postives = 54/63 (85.71%), Query Frame = 1
Query:    1 FPELSSKPYDLIVLGSGPGGEATAVQAARLGATVGVVEIKKSFGGPTGLTSKAVREAAKQINA 189
            FP+   + YDL+V+G+GPGGEATAV A+R GA V ++E +++FGGPTGLTSKAVREAAKQI+A
Sbjct:  180 FPKAEGE-YDLVVVGAGPGGEATAVAASRFGARVAIIESRRAFGGPTGLTSKAVREAAKQISA 241          
BLAST of mRNA_H-paniculata_contig19322.4882.1 vs. uniprot
Match: A0A7S2Y1R6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1R6_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 8.900e-18
Identity = 45/68 (66.18%), Postives = 54/68 (79.41%), Query Frame = 1
Query:    1 FPELSSKPYDLIVLGSGPGGEATAVQAARLGATVGVVEIKKSFGGPTGLTSKAVREAAKQINAAVKNV 204
            FPE   +PYDL+V+G GPGGEA AV AA+LGA+V ++E K SFGGPTGLTSKAVREA K+I  A+  V
Sbjct:   52 FPERY-EPYDLLVIGCGPGGEAAAVNAAKLGASVALIEKKSSFGGPTGLTSKAVREATKRICKAIDQV 118          
BLAST of mRNA_H-paniculata_contig19322.4882.1 vs. uniprot
Match: A0A6U8N6N8_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A6U8N6N8_9EUGL)

HSP 1 Score: 85.5 bits (210), Expect = 8.990e-18
Identity = 42/63 (66.67%), Postives = 54/63 (85.71%), Query Frame = 1
Query:    1 FPELSSKPYDLIVLGSGPGGEATAVQAARLGATVGVVEIKKSFGGPTGLTSKAVREAAKQINA 189
            FP+   + YDL+V+G+GPGGEATAV A+R GA V ++E +++FGGPTGLTSKAVREAAKQI+A
Sbjct:  180 FPKAEGE-YDLVVVGAGPGGEATAVAASRFGARVAIIESRRAFGGPTGLTSKAVREAAKQISA 241          
BLAST of mRNA_H-paniculata_contig19322.4882.1 vs. uniprot
Match: K8YWP5_NANGC (Soluble pyridine nucleotide transhydrogenase (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YWP5_NANGC)

HSP 1 Score: 84.7 bits (208), Expect = 1.260e-17
Identity = 47/74 (63.51%), Postives = 55/74 (74.32%), Query Frame = 1
Query:    1 FPELSSK-PYDLIVLGSGPGGEATAVQAARLGATVGVVEIKKSFGGPTGLTSKAVREAAKQINAAVKNVSEGGG 219
            FPE     PYDLIVLGSGP GE    +AA+LG  V ++EIKK+FGGPTGLTSKAVREAAK+I   +K V + GG
Sbjct:   73 FPEKEDDTPYDLIVLGSGPAGETAGCKAAQLGQKVAIIEIKKAFGGPTGLTSKAVREAAKRI---LKTVDQVGG 143          
BLAST of mRNA_H-paniculata_contig19322.4882.1 vs. uniprot
Match: A0A4D9CSA5_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CSA5_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.670e-17
Identity = 47/74 (63.51%), Postives = 55/74 (74.32%), Query Frame = 1
Query:    1 FPELSSK-PYDLIVLGSGPGGEATAVQAARLGATVGVVEIKKSFGGPTGLTSKAVREAAKQINAAVKNVSEGGG 219
            FPE     PYDLIVLGSGP GE    +AA+LG  V ++EIKK+FGGPTGLTSKAVREAAK+I   +K V + GG
Sbjct:   92 FPEKEDDTPYDLIVLGSGPAGETAGCKAAQLGQKVAIIEIKKAFGGPTGLTSKAVREAAKRI---LKTVDQVGG 162          
BLAST of mRNA_H-paniculata_contig19322.4882.1 vs. uniprot
Match: A0A7R9U251_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U251_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 1.060e-16
Identity = 46/78 (58.97%), Postives = 56/78 (71.79%), Query Frame = 1
Query:    1 FPELSSK----------PYDLIVLGSGPGGEATAVQAARLGATVGVVEIKKSFGGPTGLTSKAVREAAKQINAAVKNV 204
             P+LS K          P+DL+V+GSGPGGEA A +AA LGA V VVE K +FGGPTGLTSKAVREAA++I  AV+ +
Sbjct:   73 LPDLSQKDFPPVPPDDEPFDLVVVGSGPGGEAAAARAAALGAKVAVVERKAAFGGPTGLTSKAVREAAERIAKAVEQL 150          
BLAST of mRNA_H-paniculata_contig19322.4882.1 vs. uniprot
Match: A0A7S1TRI9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TRI9_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 7.030e-8
Identity = 29/54 (53.70%), Postives = 37/54 (68.52%), Query Frame = 1
Query:    1 FPELSSK----------PYDLIVLGSGPGGEATAVQAARLGATVGVVEIKKSFG 132
             P+LS K          PYDL+V+GSGPGGEA A +AA+LGA V VV+ K++FG
Sbjct:   74 LPDLSQKDFPPVPPDDEPYDLVVIGSGPGGEAAATRAAQLGARVAVVDRKRAFG 127          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19322.4882.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L0D3_9PHAE1.110e-2786.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CAQ8_9STRA4.990e-2269.12Pyr_redox_2 domain-containing protein (Fragment) n... [more]
W7T4Z3_9STRA1.620e-1863.51Soluble pyridine nucleotide transhydrogenase n=1 T... [more]
A0A7S1NVB4_9EUGL3.470e-1866.67Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A7S2Y1R6_9STRA8.900e-1866.18Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6U8N6N8_9EUGL8.990e-1866.67Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
K8YWP5_NANGC1.260e-1763.51Soluble pyridine nucleotide transhydrogenase (Frag... [more]
A0A4D9CSA5_9STRA1.670e-1763.51Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7R9U251_9STRA1.060e-1658.97Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7S1TRI9_9STRA7.030e-853.70Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19322contigH-paniculata_contig19322:4606..4824 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size219
Cds size219
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929473.23638-CDS-H-paniculata_contig19322:4605..48241622929473.23638-CDS-H-paniculata_contig19322:4605..4824Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19322 4606..4824 +
1691480876.7547417-CDS-H-paniculata_contig19322:4605..48241691480876.7547417-CDS-H-paniculata_contig19322:4605..4824Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19322 4606..4824 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19322.4882.1prot_H-paniculata_contig19322.4882.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19322 4606..4824 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19322.4882.1

>prot_H-paniculata_contig19322.4882.1 ID=prot_H-paniculata_contig19322.4882.1|Name=mRNA_H-paniculata_contig19322.4882.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=73bp
FPELSSKPYDLIVLGSGPGGEATAVQAARLGATVGVVEIKKSFGGPTGLT
SKAVREAAKQINAAVKNVSEGGG
back to top

mRNA from alignment at H-paniculata_contig19322:4606..4824+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19322.4882.1 ID=mRNA_H-paniculata_contig19322.4882.1|Name=mRNA_H-paniculata_contig19322.4882.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=219bp|location=Sequence derived from alignment at H-paniculata_contig19322:4606..4824+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTCCTGAGCTTTCGTCAAAGCCATATGACTTGATCGTTCTCGGATCAGG TCCGGGGGGGGAGGCGACTGCGGTGCAGGCCGCGAGGCTAGGAGCCACGG TAGGTGTTGTAGAGATCAAGAAGAGTTTTGGGGGACCTACCGGCCTGACG TCGAAGGCCGTGCGGGAAGCGGCGAAACAAATCAACGCGGCCGTCAAGAA TGTGAGTGAGGGAGGGGGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig19322:4606..4824+

>mRNA_H-paniculata_contig19322.4882.1 ID=mRNA_H-paniculata_contig19322.4882.1|Name=mRNA_H-paniculata_contig19322.4882.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=438bp|location=Sequence derived from alignment at H-paniculata_contig19322:4606..4824+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTCCTGAGCTTTCGTCAAAGCCATATGACTTGATCGTTCTCGGATCAGG
TCCGGGGGGGGAGGCGACTGCGGTGCAGGCCGCGAGGCTAGGAGCCACGG
TAGGTGTTGTAGAGATCAAGAAGAGTTTTGGGGGACCTACCGGCCTGACG
TCGAAGGCCGTGCGGGAAGCGGCGAAACAAATCAACGCGGCCGTCAAGAA
TGTGAGTGAGGGAGGGGGGTTTCCTGAGCTTTCGTCAAAGCCATATGACT
TGATCGTTCTCGGATCAGGTCCGGGGGGGGAGGCGACTGCGGTGCAGGCC
GCGAGGCTAGGAGCCACGGTAGGTGTTGTAGAGATCAAGAAGAGTTTTGG
GGGACCTACCGGCCTGACGTCGAAGGCCGTGCGGGAAGCGGCGAAACAAA
TCAACGCGGCCGTCAAGAATGTGAGTGAGGGAGGGGGG
back to top