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Homology
BLAST of mRNA_H-paniculata_contig1927.4861.1 vs. uniprot
Match: D7FW96_ECTSI (Ankyrin, TRAF-type zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW96_ECTSI) HSP 1 Score: 107 bits (268), Expect = 3.760e-22 Identity = 64/132 (48.48%), Postives = 74/132 (56.06%), Query Frame = 1
Query: 559 FPARASEIHMKYDCIFRRIKCAGCGDAISAEDMDQHKAETCRRRSVSCANKACFLQLPEXXXXXXXXXXXXXXXXWCLQGCGETMLAKARRCHHVQXXXXXXXXXXXXXPKKVRASECDDHVDIYCVRRHLA 954
FPARA E+HM Y C R +KCA CGD ++A+D+D HK +TCRRR ++C N CFLQLP WCLQGCGE M XXXXXXXXXXXXX D CVRRH+A
Sbjct: 1912 FPARALEVHMMYGCALRLVKCAACGDEVTAKDLDSHKKDTCRRRLIACGNDGCFLQLPSEDMVAHREKECSRRRVWCLQGCGEEMRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDFLCVRRHMA 2043
BLAST of mRNA_H-paniculata_contig1927.4861.1 vs. uniprot
Match: A0A6H5L3D7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3D7_9PHAE) HSP 1 Score: 65.5 bits (158), Expect = 2.530e-8 Identity = 24/42 (57.14%), Postives = 32/42 (76.19%), Query Frame = 1
Query: 559 FPARASEIHMKYDCIFRRIKCAGCGDAISAEDMDQHKAETCR 684
FPARA E+H+ Y C R +KCA CGD ++A+D+D HK +TCR
Sbjct: 318 FPARALEVHLMYGCALRLVKCAACGDEVTAKDLDSHKKDTCR 359
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 105.1 |
| Seed ortholog evalue | 5.9e-20 |
| Seed eggNOG ortholog | 2880.D7FW96 |
| KEGG ko | ko:K08873 |
| KEGG Pathway | ko03015,map03015 |
| Hectar predicted targeting category | other localisation |
| EggNOG free text desc. | TNF receptor-associated factor |
| EggNOG OGs | COG0666@1,KOG0297@1,KOG0297@2759,KOG4177@2759 |
| EC | 2.7.11.1 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko01000,ko01001,ko03019 |
| Exons | 7 |
| Model size | 957 |
| Cds size | 942 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1927.4861.1 >prot_H-paniculata_contig1927.4861.1 ID=prot_H-paniculata_contig1927.4861.1|Name=mRNA_H-paniculata_contig1927.4861.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=314bp
MRPVRCPGCHNKVVASVLSRHEEETCPKRLVICEQGCGEKVPASGMRRHL
AEACPLMMVVCRLGCGITMWLKMRAEHESLLCSERILSCKWGCEERIKAK
HLSEHEERECVHSKVPCGNRCGQTVPSGRMKVHYAEECAHRFVTCGVGCG
YKIRAKDLSVHEANECQARVILCPRGCGEGPFPARASEIHMKYDCIFRRI
KCAGCGDAISAEDMDQHKAETCRRRSVSCANKACFLQLPEEDMKVHEATE
CSHRIVWCLQGCGETMLAKARRCHHVQACSMRYLSCPLGCPKKVRASECD
DHVDIYCVRRHLA* back to topmRNA from alignment at H-paniculata_contig1927:12860..16274+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig1927.4861.1 ID=mRNA_H-paniculata_contig1927.4861.1|Name=mRNA_H-paniculata_contig1927.4861.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3415bp|location=Sequence derived from alignment at H-paniculata_contig1927:12860..16274+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAACTGCATGCACGATGCGACCTGTGCGTTGTCCTGGGTGCCACAACAA
GGTGGTGGCGTCAGTACTAAGCAGACACGAAGAGGAAACGTGCCCAAAGA
GGCTGGTGATCTGTGAGCAGGGATGCGGAGAGAAAGTTCCAGCGTCGGGT
ATGCGTCGACACTTAGCTGAGGTATTGTTTTCCCACTCAATACAATTGCT
TTGGAGAAGCATGGCTGAGGAGGAGCAAGACGGGGGAAGTCAAATGGCGC
CAACATTGGACTGCATTTGTCTCAGATTGAGTAACCCGTACTGGCAACGT
TCTGCGCCGTAGGCGAGGAACCGCTGATGGACAAGATTAAGGGAGGGTCA
ATCTTGAAAAACAGAAGTTGCTGCCTATATATTTCATACCGACCTCTAAT
ATCGTCCTCTACTACCTATGTCGTCTCTGGCATGTCTTGACTGAGCAGGC
ATGTCCGTTGATGATGGTAGTTTGCCGCCTAGGCTGCGGCATAACGATGT
GGCTCAAGATGAGGGCAGAACACGAGAGCTTGCTGTGCAGCGAGCGGATA
CTATCTTGCAAATGGGGATGTGAGGAGAGAATAAAGGTGAGGTACACTGC
CACACACGTGCGAGTTGTCGGAACAGTGCCATGTCTATTCAAGTACATTG
ACGTGGTAAAACACTTGATCACCTTCAAACGCGTCATACACGACTCCACT
GGTGATCGCTGAGCCCCTAAAAAAACGCAGATGAGTATGGGATTCGGCTT
TTTGTCGAGATCACTTTTGGTGTATTGCAGCGCACACGCGTCTCTCCTCT
CGCTGTCTTGTTCAGGCTAAGCATCTCTCCGAGCACGAAGAACGGGAGTG
CGTTCACTCGAAGGTTCCCTGTGGAAATCGTTGCGGACAAACGGTGCCTT
CTGGCAGGATGAAAGTACACTACGCCGAAGAGTGTGCGCATCGTTTCGTT
ACCTGCGGGGTCGGCTGTGGGTACAAAATCCGCGCGAAGGTAGGAAACCT
CTCACAGCCTTTGCCCGACCTTGCTGCGTGCGCTTTGAAGGATAATACAT
GTAGCTTCGTGTTTTGTCGAGGACTACCACAAGTTCAATATTTCATCGGT
CATTGTGTACCGCCCGGTAGACCATGCGCCTATCTCCAGTAATCCCCACG
ACATCCGTAAGTAATGACTCATTATACGTGGATCTTGAATTGAGCTTTTG
TGCGGTTCGGCTGTCTGACTCACGTTTAAGGGTGGATAAAAGCCACCCTA
ATTACCCCCGGCATTACATTATTTCGGGCGTGGAATAGTAGGGTGTTGAG
TACGAAGTACGACAGTAATTACCGTCAAACGGAATACTTCGCCAAAAACC
TTGACTGCGGATGTCCTCGGGTATCTTGAAAATCGAACCCATCCTCGCAG
GATTTGTCCGTTCATGAGGCCAACGAGTGCCAGGCTCGAGTGATTTTGTG
CCCCCGCGGGTGCGGCGAAGGGCCGTTCCCAGCTCGCGCTTCGGAAATAC
ACATGAAATACGACTGCATATTTAGGAGAATCAAGTGCGCCGGGTGCGGC
GACGCCATTTCGGCAGAGGACATGGATCAGCATAAGGCGGAAACATGTCG
GTATATAGAAGTAACAAGACGACGGGGAAGGGCACATGAGTCGAAGTCGG
CAAGGCTGTGGTCACGGGTAGTTGAATTCATTTACAAGATGCTTGTATTG
TGTGGATGATTTCGTTTCCAACACGCTCTAGTTTCACCCGAGTAAGTGTG
GGGCTTTGTTATTGGCTGGCTTTTTTCGGAATAACCGCAGGCTAATCTGG
ACTCTGTTTCGTGAATTATCGGTTGTTTCATTAGGCGACGGTCAGTTTCG
TGTGCCAACAAGGCCTGTTTTTTACAGCTTCCTGAGGAGGACATGAAAGT
GCACGAAGCCACGGAATGCTCTCACCGGATCGTTTGGTGTCTCCAGGTGA
AGCCAATACCCCGAGGAGAAGTTCCGACTATGGATTCCTTTTTGAGTGGC
CGGCCGCCTAACGACCACCAACCACCACAAGTGGGGAAATATACTTAGCA
CATGTACATGGAGCAACAAGAGTGATGTTGACAAAATATGAGCAAAGGCG
AACAACAAGTAAGTGTCTACAGTCAGTATCTTGCAAATAATCGAGATGAC
ATTGGTGTGCTGGCTACGAGCCATTCATGACGAGTAATTTATGAGCAGAA
ACGTTTTCTGGAAAGTAACAGCAAAACAACCTCACTATGGGAGGCAAAAA
ATAGCTCACTTTCACGCTCGACTCCAAATTTCATTCCTCGTATACCGGCA
GCATATTTGAGCGTAGCTTGAAGGAATAGAGAGGGGCAACGCAGCAATAG
TGGCGTACGGCTGTTATGTTGTCATCACAAAAATTTCACTGGCATCTAAA
GTGTAATTGGCGGGGCATACGATCGCTGCGTTATATATGGGCTGTAAAAG
ACGCCGTCAGCGAGCCTCTGTTATCCCTTAAATGCACCGCAGACACACTC
CGAGCAGCCCCTGTACTGGTCGAATAATTTCATAACGTCGTCCGACTTGT
TCTTTGCTGCTTTTCTTTGTCCTTGGAACTGGAAAGGGATGTGGAGAGAC
AATGCTGGCAAAAGCCAGACGGTGCCATCACGTACAAGCCTGCTCTATGC
GGTACCTGTCGTGCCCTTTGGGGTGCCCAAAAAAGGTGAGACGGAAGTAG
CACTTTTCCGCAGCTTCACGATAGCGCGTAAATAATCGGTAGTATATTTA
ACGAGCTAGACGTTGGATGTAATCGAGAGTAGATTCGGCGATAAGAGAAA
AAACATCATCCACTCGGCTGTGTGAGTCCTAGCCGCATCACCAGTTCGAG
TATGCTGTCTATTTTTTTAGCTTGTACAGCACGTACGAGCGAGATTAATT
CCCTGGTGTGATCAACAAAATCCAGTCCATGCGGCATGTTTGGTACAAAC
AAAGAAAACTATCATACGTGTAGCGCAGGAACGACTATATCCTCAACATG
TGTTTGGTCGTTTCCTCCGATAGCCACCAGGATTGAAGAAAGTCACACAC
AACCGATGAATACATGGCAAAGAAATGGCCCCCACCGCATGTACAATTCG
TTACGCTCTATCTCCAAGCCAGACGGGTGTGCGATACCATTACACGCGTG
TGTGTGCTTTATTCATGAAGTATATCCAAACGAGGGCAACCTAGCCCACT
ACCCCCACCGTATTTTGGGCAATCGATCAATGGGTCAGGGTACATTTAAT
AGATGCAATTACTTTACCGTAATACAGCACCACTGTCTCTCCTTTTCTGC
TGTTTCCCGTCCGCGTTCTCTGCCTATTGTGTGTTATATATGCATCACGA
AGGTTCGAGCGTCGGAGTGCGACGACCATGTGGATATATATTGTGTCAGG
CGGCATCTGGCTTGA back to topCoding sequence (CDS) from alignment at H-paniculata_contig1927:12860..16274+ >mRNA_H-paniculata_contig1927.4861.1 ID=mRNA_H-paniculata_contig1927.4861.1|Name=mRNA_H-paniculata_contig1927.4861.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1884bp|location=Sequence derived from alignment at H-paniculata_contig1927:12860..16274+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGACCTGTGCGTTGTCCTGGGTGCCACAACAAGGTGGTGGCGTCAGT
ACTAAGCAGACACGAAGAGGAAACGTGCCCAAAGAGGCTGGTGATCTGTG
AGCAGGGATGCGGAGAGAAAGTTCCAGCGTCGGGTATGCGTCGACACTTA
GCTGAGATGCGACCTGTGCGTTGTCCTGGGTGCCACAACAAGGTGGTGGC
GTCAGTACTAAGCAGACACGAAGAGGAAACGTGCCCAAAGAGGCTGGTGA
TCTGTGAGCAGGGATGCGGAGAGAAAGTTCCAGCGTCGGGTATGCGTCGA
CACTTAGCTGAGGCATGTCCGTTGATGATGGTAGTTTGCCGCCTAGGCTG
CGGCATAACGATGTGGCTCAAGATGAGGGCAGAACACGAGAGCTTGCTGT
GCAGCGAGCGGATACTATCTTGCAAATGGGGATGTGAGGAGAGAATAAAG
GCATGTCCGTTGATGATGGTAGTTTGCCGCCTAGGCTGCGGCATAACGAT
GTGGCTCAAGATGAGGGCAGAACACGAGAGCTTGCTGTGCAGCGAGCGGA
TACTATCTTGCAAATGGGGATGTGAGGAGAGAATAAAGGCTAAGCATCTC
TCCGAGCACGAAGAACGGGAGTGCGTTCACTCGAAGGTTCCCTGTGGAAA
TCGTTGCGGACAAACGGTGCCTTCTGGCAGGATGAAAGTACACTACGCCG
AAGAGTGTGCGCATCGTTTCGTTACCTGCGGGGTCGGCTGTGGGTACAAA
ATCCGCGCGAAGGCTAAGCATCTCTCCGAGCACGAAGAACGGGAGTGCGT
TCACTCGAAGGTTCCCTGTGGAAATCGTTGCGGACAAACGGTGCCTTCTG
GCAGGATGAAAGTACACTACGCCGAAGAGTGTGCGCATCGTTTCGTTACC
TGCGGGGTCGGCTGTGGGTACAAAATCCGCGCGAAGGATTTGTCCGTTCA
TGAGGCCAACGAGTGCCAGGCTCGAGTGATTTTGTGCCCCCGCGGGTGCG
GCGAAGGGCCGTTCCCAGCTCGCGCTTCGGAAATACACATGAAATACGAC
TGCATATTTAGGAGAATCAAGTGCGCCGGGTGCGGCGACGCCATTTCGGC
AGAGGACATGGATCAGCATAAGGCGGAAACATGTCGGATTTGTCCGTTCA
TGAGGCCAACGAGTGCCAGGCTCGAGTGATTTTGTGCCCCCGCGGGTGCG
GCGAAGGGCCGTTCCCAGCTCGCGCTTCGGAAATACACATGAAATACGAC
TGCATATTTAGGAGAATCAAGTGCGCCGGGTGCGGCGACGCCATTTCGGC
AGAGGACATGGATCAGCATAAGGCGGAAACATGTCGGCGACGGTCAGTTT
CGTGTGCCAACAAGGCCTGTTTTTTACAGCTTCCTGAGGAGGACATGAAA
GTGCACGAAGCCACGGAATGCTCTCACCGGATCGTTTGGTGTCTCCAGGC
GACGGTCAGTTTCGTGTGCCAACAAGGCCTGTTTTTTACAGCTTCCTGAG
GAGGACATGAAAGTGCACGAAGCCACGGAATGCTCTCACCGGATCGTTTG
GTGTCTCCAGGGATGTGGAGAGACAATGCTGGCAAAAGCCAGACGGTGCC
ATCACGTACAAGCCTGCTCTATGCGGTACCTGTCGTGCCCTTTGGGGTGC
CCAAAAAAGGGATGTGGAGAGACAATGCTGGCAAAAGCCAGACGGTGCCA
TCACGTACAAGCCTGCTCTATGCGGTACCTGTCGTGCCCTTTGGGGTGCC
CAAAAAAGGTTCGAGCGTCGGAGTGCGACGACCATGTGGATATATATTGT
GTCAGGCGGCATCTGGCTTGAGTTCGAGCGTCGGAGTGCGACGACCATGT
GGATATATATTGTGTCAGGCGGCATCTGGCTTGA back to top
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