prot_H-paniculata_contig1927.4861.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig1927.4861.1
Unique Nameprot_H-paniculata_contig1927.4861.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length314
Homology
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BLAST of mRNA_H-paniculata_contig1927.4861.1 vs. uniprot
Match: D7FW96_ECTSI (Ankyrin, TRAF-type zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW96_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 3.360e-22
Identity = 64/132 (48.48%), Postives = 74/132 (56.06%), Query Frame = 0 
Query:  182 FPARASEIHMKYDCIFRRIKCAGCGDAISAEDMDQHKAETCRRRSVSCANKACFLQLPEXXXXXXXXXXXXXXXXWCLQGCGETMLAKARRCHHVQXXXXXXXXXXXXXPKKVRASECDDHVDIYCVRRHLA 313
            FPARA E+HM Y C  R +KCA CGD ++A+D+D HK +TCRRR ++C N  CFLQLP                 WCLQGCGE M           XXXXXXXXXXXXX             D  CVRRH+A
Sbjct: 1912 FPARALEVHMMYGCALRLVKCAACGDEVTAKDLDSHKKDTCRRRLIACGNDGCFLQLPSEDMVAHREKECSRRRVWCLQGCGEEMRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDFLCVRRHMA 2043
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BLAST of mRNA_H-paniculata_contig1927.4861.1 vs. uniprot
Match: A0A6H5L3D7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3D7_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 2.400e-8
Identity = 24/42 (57.14%), Postives = 32/42 (76.19%), Query Frame = 0 
Query:  182 FPARASEIHMKYDCIFRRIKCAGCGDAISAEDMDQHKAETCR 223
            FPARA E+H+ Y C  R +KCA CGD ++A+D+D HK +TCR
Sbjct:  318 FPARALEVHLMYGCALRLVKCAACGDEVTAKDLDSHKKDTCR 359
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1927.4861.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FW96_ECTSI3.360e-2248.48Ankyrin, TRAF-type zinc finger protein n=1 Tax=Ect... [more]
A0A6H5L3D7_9PHAE2.400e-857.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 1..59
e-value: 4.5E-10
score: 41.1
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 163..220
e-value: 9.9E-10
score: 40.5
coord: 221..275
e-value: 7.7E-6
score: 28.1
coord: 107..162
e-value: 7.2E-9
score: 37.8
IPR001293Zinc finger, TRAF-typePFAMPF02176zf-TRAFcoord: 161..217
e-value: 1.3E-5
score: 25.8
coord: 21..77
e-value: 1.7E-7
score: 31.8
IPR001293Zinc finger, TRAF-typePROSITEPS50145ZF_TRAFcoord: 21..65
score: 11.178
IPR001293Zinc finger, TRAF-typePROSITEPS50145ZF_TRAFcoord: 245..290
score: 8.772
IPR001293Zinc finger, TRAF-typePROSITEPS50145ZF_TRAFcoord: 105..149
score: 10.131
IPR001293Zinc finger, TRAF-typePROSITEPS50145ZF_TRAFcoord: 190..244
score: 9.56
NoneNo IPR availablePANTHERPTHR10131:SF65RING FINGER PROTEIN DG17-RELATEDcoord: 148..269
coord: 204..309
coord: 73..162
coord: 2..66
coord: 52..107
NoneNo IPR availablePANTHERPTHR10131TNF RECEPTOR ASSOCIATED FACTORcoord: 148..269
coord: 204..309
coord: 73..162
coord: 2..66
coord: 52..107
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 90..145

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1927contigH-paniculata_contig1927:12875..16274 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1927.4861.1mRNA_H-paniculata_contig1927.4861.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig1927 12860..16274 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig1927.4861.1 ID=prot_H-paniculata_contig1927.4861.1|Name=mRNA_H-paniculata_contig1927.4861.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=314bp
MRPVRCPGCHNKVVASVLSRHEEETCPKRLVICEQGCGEKVPASGMRRHL
AEACPLMMVVCRLGCGITMWLKMRAEHESLLCSERILSCKWGCEERIKAK
HLSEHEERECVHSKVPCGNRCGQTVPSGRMKVHYAEECAHRFVTCGVGCG
YKIRAKDLSVHEANECQARVILCPRGCGEGPFPARASEIHMKYDCIFRRI
KCAGCGDAISAEDMDQHKAETCRRRSVSCANKACFLQLPEEDMKVHEATE
CSHRIVWCLQGCGETMLAKARRCHHVQACSMRYLSCPLGCPKKVRASECD
DHVDIYCVRRHLA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001293Znf_TRAF
IPR008974TRAF-like