mRNA_H-paniculata_contig19239.4847.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig19239.4847.1 vs. uniprot
Match: A0A1X7TQ29_AMPQE (gag_pre-integrs domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7TQ29_AMPQE) HSP 1 Score: 60.1 bits (144), Expect = 2.220e-8 Identity = 41/127 (32.28%), Postives = 66/127 (51.97%), Query Frame = 1
Query: 7 KRTIGKQVKVLRLFSNDCTTPKNN--------EKRQQ----VVDTKLLHEQLGHVRSLPTVARQQGIRLSGKLGICSACEKGKASKQPVKKYREERTTEPFELVHTDIAGPVD-KSFGGCRFAIIFV 348
K+ IG + V +L+ D T K+N EKR+ V +L H + +R L + A I +G C AC +GK + P + +E R+T+P +L+H+D+ GP+ +S GG R+ I F+
Sbjct: 91 KQLIGVGLPVGKLYRLDGTIQKSNKQSAFTSNEKRESTSIDVWHRRLAHVNIRQLRELCSSADGINIPSNGDRSFCEACIEGKMHRLPHRPLKEIRSTQPPQLIHSDVCGPMQTRSLGGSRYFITFI 217
BLAST of mRNA_H-paniculata_contig19239.4847.1 vs. uniprot
Match: A0A4Q2D651_9AGAR (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Candolleomyces aberdarensis TaxID=2316362 RepID=A0A4Q2D651_9AGAR) HSP 1 Score: 58.9 bits (141), Expect = 1.030e-7 Identity = 34/91 (37.36%), Postives = 50/91 (54.95%), Query Frame = 1
Query: 97 VDTKLLHEQLGH-----VRSLPTVARQQGI-RLSGKLGICSACEKGKASKQPVKKYREERTTEPFELVHTDIAGPVD-KSFGGCRFAIIFV 348
+D +LH +LGH ++ + + +GI +GKL C C GK K P + T+ PFEL+HTD+ GPV ++ G R+ IIFV
Sbjct: 467 IDINILHRRLGHASESRIKQMVKRGQLKGISETTGKLTFCEPCVLGKMKKLPFRHQARRETSAPFELMHTDLGGPVTPQTPSGFRYWIIFV 557
BLAST of mRNA_H-paniculata_contig19239.4847.1 vs. uniprot
Match: A0A7D9J652_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9J652_PARCT) HSP 1 Score: 57.0 bits (136), Expect = 3.690e-7 Identity = 37/101 (36.63%), Postives = 52/101 (51.49%), Query Frame = 1
Query: 73 NNEKRQQVVDTKLLHEQLGH-----VRSLPT---VARQQGIRLSGKLGICSACEKGKASKQPVKKYREERTTEPFELVHTDIAGPVD-KSFGGCRFAIIFV 348
N K+Q D L H +LGH V L V+ G+ + + C AC KGK + P K + R +EPFELVH+D+ GP+ S GG R+ + F+
Sbjct: 44 NIAKQQPDTDRYLWHCRLGHLGMNNVNKLINENMVSGMDGVSNTNENQFCEACIKGKHHRCPYPKTADYRASEPFELVHSDVCGPMSVPSLGGSRYYVSFI 144
BLAST of mRNA_H-paniculata_contig19239.4847.1 vs. uniprot
Match: A0A8H8JVA7_9AGAM (Pol polyprotein/retrotransposon n=1 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8JVA7_9AGAM) HSP 1 Score: 52.0 bits (123), Expect = 2.700e-5 Identity = 30/89 (33.71%), Postives = 48/89 (53.93%), Query Frame = 1
Query: 115 HEQLGHVRSLPTVARQQGIRLSGKLGI-----------CSACEKGKASKQPVKKYREERTTEPFELVHTDIAGPVDKSFGGCRFAIIFV 348
H++LGH+ S A Q + +G++G C AC GK ++ P T++P EL+H+D+ GP+D S GG R+ ++FV
Sbjct: 85 HKRLGHIGS----AVLQQMSATGQIGKVTREDLEQIAKCGACVMGKGARIPFVSSTS-TTSQPLELLHSDVCGPLDASIGGVRYVLLFV 168
BLAST of mRNA_H-paniculata_contig19239.4847.1 vs. uniprot
Match: A0A251TN47_HELAN (Putative zinc finger, CCHC-type n=2 Tax=Helianthus annuus TaxID=4232 RepID=A0A251TN47_HELAN) HSP 1 Score: 52.0 bits (123), Expect = 2.750e-5 Identity = 26/75 (34.67%), Postives = 42/75 (56.00%), Query Frame = 1
Query: 127 GHVRSLPTVARQQGIRLSGKLGICSACEKGKASKQPVKKYREERTTEPFELVHTDIAGPVDK-SFGGCRFAIIFV 348
G V LP + + + +C C GK +++P K + R +EP +LVH+DI GP++ S GGC++ I F+
Sbjct: 459 GTVNGLPKINKSEH--------VCEGCVFGKHARKPFSKKAKWRASEPLQLVHSDICGPMNTPSIGGCKYFITFI 525
BLAST of mRNA_H-paniculata_contig19239.4847.1 vs. uniprot
Match: A0A540LT53_MALBA (Uncharacterized protein n=1 Tax=Malus baccata TaxID=106549 RepID=A0A540LT53_MALBA) HSP 1 Score: 52.0 bits (123), Expect = 2.770e-5 Identity = 31/88 (35.23%), Postives = 52/88 (59.09%), Query Frame = 1
Query: 109 LLHEQLGHV--RSLPTVARQQGIR----LSGKL-GICSACEKGKASKQPVKKYREERTTEPFELVHTDIAGPVD-KSFGGCRFAIIFV 348
L H++LGH+ R L ++++Q +R L GK G+C AC+ GK +K T++P +L+H D+ GPV +S GG ++ ++ V
Sbjct: 762 LWHQRLGHMNYRDLLKISKKQYVRGLPSLEGKQEGVCGACQIGKQTKSAHSPKNFISTSQPLQLMHMDLVGPVQTESLGGKKYILVLV 849
BLAST of mRNA_H-paniculata_contig19239.4847.1 vs. uniprot
Match: UPI000D08D073 (uncharacterized protein LOC112171370 n=1 Tax=Rosa chinensis TaxID=74649 RepID=UPI000D08D073) HSP 1 Score: 51.6 bits (122), Expect = 3.700e-5 Identity = 31/88 (35.23%), Postives = 52/88 (59.09%), Query Frame = 1
Query: 109 LLHEQLGHV--RSLPTVARQQGIR----LSGK-LGICSACEKGKASKQPVKKYREERTTEPFELVHTDIAGPVD-KSFGGCRFAIIFV 348
L H +L HV + L ++ ++G+R LSGK G+C C+ GK ++ + T++PF+L+H D+ GPV KS GG ++ ++ V
Sbjct: 778 LWHRRLCHVNFQDLVKLSTKEGVRGLPKLSGKPTGMCEGCKLGKQTRSSHRVTNYVSTSQPFDLMHMDLVGPVQTKSLGGKKYMLVLV 865
BLAST of mRNA_H-paniculata_contig19239.4847.1 vs. uniprot
Match: UPI000D0898A5 (uncharacterized protein LOC112199671 n=1 Tax=Rosa chinensis TaxID=74649 RepID=UPI000D0898A5) HSP 1 Score: 51.6 bits (122), Expect = 3.760e-5 Identity = 29/89 (32.58%), Postives = 53/89 (59.55%), Query Frame = 1
Query: 106 KLLHEQLGHV--RSLPTVARQQGIR----LSGKLGI-CSACEKGKASKQPVKKYREERTTEPFELVHTDIAGPVDK-SFGGCRFAIIFV 348
+L H++LGH+ + L ++ ++G+R LSG+ I C C+ GK + + E T++P +L+H D+ GP+ K S GG ++ ++ V
Sbjct: 667 ELWHQRLGHINFQDLVKLSSKEGVRGLPKLSGQTDIVCEGCKLGKQIRSSHRVINEITTSQPLDLMHMDLVGPIQKESIGGKKYILVLV 755
BLAST of mRNA_H-paniculata_contig19239.4847.1 vs. uniprot
Match: A0A251T2S6_HELAN (Putative zinc finger, CCHC-type n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251T2S6_HELAN) HSP 1 Score: 51.2 bits (121), Expect = 5.070e-5 Identity = 29/87 (33.33%), Postives = 47/87 (54.02%), Query Frame = 1
Query: 109 LLHEQLGHVR--SLPTVARQQGI----RLSGKLGICSACEKGKASKQPVKKYREERTTEPFELVHTDIAGPVD-KSFGGCRFAIIFV 348
L H + GHV +L + + + ++ IC C GK +++P K R +EP +L+H+DI GP+ +S GGCR+ I F+
Sbjct: 356 LWHRRYGHVNFETLHDMGMNETVSGLPKIDKSSHICEGCIFGKHARKPFSKKAVWRASEPLQLIHSDICGPMKTQSIGGCRYFITFI 442
BLAST of mRNA_H-paniculata_contig19239.4847.1 vs. uniprot
Match: A0A328KVD4_9BACI (gag_pre-integrs domain-containing protein (Fragment) n=2 Tax=Bacillus sp. SRB_8 TaxID=1969377 RepID=A0A328KVD4_9BACI) HSP 1 Score: 48.5 bits (114), Expect = 5.810e-5 Identity = 30/87 (34.48%), Postives = 48/87 (55.17%), Query Frame = 1
Query: 109 LLHEQLGH-----VRSLPTV-ARQQGIRL-SGKLGICSACEKGKASKQPVKKYREERTTEPFELVHTDIAGPV-DKSFGGCRFAIIF 345
+ H + GH ++ LP+ + GI++ S + C +C +GK +QP K R T+PFE+V +DI GP+ + S G R+ I F
Sbjct: 1 MAHRRFGHASNERLQHLPSATSTTDGIKINSNERTFCDSCAQGKTRRQPFPKARRTNPTKPFEIVSSDIKGPILEPSKEGFRYYISF 87 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19239.4847.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig19239.4847.1 >prot_H-paniculata_contig19239.4847.1 ID=prot_H-paniculata_contig19239.4847.1|Name=mRNA_H-paniculata_contig19239.4847.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=116bp AAKRTIGKQVKVLRLFSNDCTTPKNNEKRQQVVDTKLLHEQLGHVRSLPTback to top mRNA from alignment at H-paniculata_contig19239:23..370- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig19239.4847.1 ID=mRNA_H-paniculata_contig19239.4847.1|Name=mRNA_H-paniculata_contig19239.4847.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=348bp|location=Sequence derived from alignment at H-paniculata_contig19239:23..370- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig19239:23..370- >mRNA_H-paniculata_contig19239.4847.1 ID=mRNA_H-paniculata_contig19239.4847.1|Name=mRNA_H-paniculata_contig19239.4847.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=696bp|location=Sequence derived from alignment at H-paniculata_contig19239:23..370- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |