mRNA_H-paniculata_contig19239.4847.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19239.4847.1
Unique NamemRNA_H-paniculata_contig19239.4847.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig19239.4847.1 vs. uniprot
Match: A0A1X7TQ29_AMPQE (gag_pre-integrs domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7TQ29_AMPQE)

HSP 1 Score: 60.1 bits (144), Expect = 2.220e-8
Identity = 41/127 (32.28%), Postives = 66/127 (51.97%), Query Frame = 1
Query:    7 KRTIGKQVKVLRLFSNDCTTPKNN--------EKRQQ----VVDTKLLHEQLGHVRSLPTVARQQGIRLSGKLGICSACEKGKASKQPVKKYREERTTEPFELVHTDIAGPVD-KSFGGCRFAIIFV 348
            K+ IG  + V +L+  D T  K+N        EKR+     V   +L H  +  +R L + A    I  +G    C AC +GK  + P +  +E R+T+P +L+H+D+ GP+  +S GG R+ I F+
Sbjct:   91 KQLIGVGLPVGKLYRLDGTIQKSNKQSAFTSNEKRESTSIDVWHRRLAHVNIRQLRELCSSADGINIPSNGDRSFCEACIEGKMHRLPHRPLKEIRSTQPPQLIHSDVCGPMQTRSLGGSRYFITFI 217          
BLAST of mRNA_H-paniculata_contig19239.4847.1 vs. uniprot
Match: A0A4Q2D651_9AGAR (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Candolleomyces aberdarensis TaxID=2316362 RepID=A0A4Q2D651_9AGAR)

HSP 1 Score: 58.9 bits (141), Expect = 1.030e-7
Identity = 34/91 (37.36%), Postives = 50/91 (54.95%), Query Frame = 1
Query:   97 VDTKLLHEQLGH-----VRSLPTVARQQGI-RLSGKLGICSACEKGKASKQPVKKYREERTTEPFELVHTDIAGPVD-KSFGGCRFAIIFV 348
            +D  +LH +LGH     ++ +    + +GI   +GKL  C  C  GK  K P +      T+ PFEL+HTD+ GPV  ++  G R+ IIFV
Sbjct:  467 IDINILHRRLGHASESRIKQMVKRGQLKGISETTGKLTFCEPCVLGKMKKLPFRHQARRETSAPFELMHTDLGGPVTPQTPSGFRYWIIFV 557          
BLAST of mRNA_H-paniculata_contig19239.4847.1 vs. uniprot
Match: A0A7D9J652_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9J652_PARCT)

HSP 1 Score: 57.0 bits (136), Expect = 3.690e-7
Identity = 37/101 (36.63%), Postives = 52/101 (51.49%), Query Frame = 1
Query:   73 NNEKRQQVVDTKLLHEQLGH-----VRSLPT---VARQQGIRLSGKLGICSACEKGKASKQPVKKYREERTTEPFELVHTDIAGPVD-KSFGGCRFAIIFV 348
            N  K+Q   D  L H +LGH     V  L     V+   G+  + +   C AC KGK  + P  K  + R +EPFELVH+D+ GP+   S GG R+ + F+
Sbjct:   44 NIAKQQPDTDRYLWHCRLGHLGMNNVNKLINENMVSGMDGVSNTNENQFCEACIKGKHHRCPYPKTADYRASEPFELVHSDVCGPMSVPSLGGSRYYVSFI 144          
BLAST of mRNA_H-paniculata_contig19239.4847.1 vs. uniprot
Match: A0A8H8JVA7_9AGAM (Pol polyprotein/retrotransposon n=1 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8JVA7_9AGAM)

HSP 1 Score: 52.0 bits (123), Expect = 2.700e-5
Identity = 30/89 (33.71%), Postives = 48/89 (53.93%), Query Frame = 1
Query:  115 HEQLGHVRSLPTVARQQGIRLSGKLGI-----------CSACEKGKASKQPVKKYREERTTEPFELVHTDIAGPVDKSFGGCRFAIIFV 348
            H++LGH+ S    A  Q +  +G++G            C AC  GK ++ P        T++P EL+H+D+ GP+D S GG R+ ++FV
Sbjct:   85 HKRLGHIGS----AVLQQMSATGQIGKVTREDLEQIAKCGACVMGKGARIPFVSSTS-TTSQPLELLHSDVCGPLDASIGGVRYVLLFV 168          
BLAST of mRNA_H-paniculata_contig19239.4847.1 vs. uniprot
Match: A0A251TN47_HELAN (Putative zinc finger, CCHC-type n=2 Tax=Helianthus annuus TaxID=4232 RepID=A0A251TN47_HELAN)

HSP 1 Score: 52.0 bits (123), Expect = 2.750e-5
Identity = 26/75 (34.67%), Postives = 42/75 (56.00%), Query Frame = 1
Query:  127 GHVRSLPTVARQQGIRLSGKLGICSACEKGKASKQPVKKYREERTTEPFELVHTDIAGPVDK-SFGGCRFAIIFV 348
            G V  LP + + +         +C  C  GK +++P  K  + R +EP +LVH+DI GP++  S GGC++ I F+
Sbjct:  459 GTVNGLPKINKSEH--------VCEGCVFGKHARKPFSKKAKWRASEPLQLVHSDICGPMNTPSIGGCKYFITFI 525          
BLAST of mRNA_H-paniculata_contig19239.4847.1 vs. uniprot
Match: A0A540LT53_MALBA (Uncharacterized protein n=1 Tax=Malus baccata TaxID=106549 RepID=A0A540LT53_MALBA)

HSP 1 Score: 52.0 bits (123), Expect = 2.770e-5
Identity = 31/88 (35.23%), Postives = 52/88 (59.09%), Query Frame = 1
Query:  109 LLHEQLGHV--RSLPTVARQQGIR----LSGKL-GICSACEKGKASKQPVKKYREERTTEPFELVHTDIAGPVD-KSFGGCRFAIIFV 348
            L H++LGH+  R L  ++++Q +R    L GK  G+C AC+ GK +K          T++P +L+H D+ GPV  +S GG ++ ++ V
Sbjct:  762 LWHQRLGHMNYRDLLKISKKQYVRGLPSLEGKQEGVCGACQIGKQTKSAHSPKNFISTSQPLQLMHMDLVGPVQTESLGGKKYILVLV 849          
BLAST of mRNA_H-paniculata_contig19239.4847.1 vs. uniprot
Match: UPI000D08D073 (uncharacterized protein LOC112171370 n=1 Tax=Rosa chinensis TaxID=74649 RepID=UPI000D08D073)

HSP 1 Score: 51.6 bits (122), Expect = 3.700e-5
Identity = 31/88 (35.23%), Postives = 52/88 (59.09%), Query Frame = 1
Query:  109 LLHEQLGHV--RSLPTVARQQGIR----LSGK-LGICSACEKGKASKQPVKKYREERTTEPFELVHTDIAGPVD-KSFGGCRFAIIFV 348
            L H +L HV  + L  ++ ++G+R    LSGK  G+C  C+ GK ++   +      T++PF+L+H D+ GPV  KS GG ++ ++ V
Sbjct:  778 LWHRRLCHVNFQDLVKLSTKEGVRGLPKLSGKPTGMCEGCKLGKQTRSSHRVTNYVSTSQPFDLMHMDLVGPVQTKSLGGKKYMLVLV 865          
BLAST of mRNA_H-paniculata_contig19239.4847.1 vs. uniprot
Match: UPI000D0898A5 (uncharacterized protein LOC112199671 n=1 Tax=Rosa chinensis TaxID=74649 RepID=UPI000D0898A5)

HSP 1 Score: 51.6 bits (122), Expect = 3.760e-5
Identity = 29/89 (32.58%), Postives = 53/89 (59.55%), Query Frame = 1
Query:  106 KLLHEQLGHV--RSLPTVARQQGIR----LSGKLGI-CSACEKGKASKQPVKKYREERTTEPFELVHTDIAGPVDK-SFGGCRFAIIFV 348
            +L H++LGH+  + L  ++ ++G+R    LSG+  I C  C+ GK  +   +   E  T++P +L+H D+ GP+ K S GG ++ ++ V
Sbjct:  667 ELWHQRLGHINFQDLVKLSSKEGVRGLPKLSGQTDIVCEGCKLGKQIRSSHRVINEITTSQPLDLMHMDLVGPIQKESIGGKKYILVLV 755          
BLAST of mRNA_H-paniculata_contig19239.4847.1 vs. uniprot
Match: A0A251T2S6_HELAN (Putative zinc finger, CCHC-type n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251T2S6_HELAN)

HSP 1 Score: 51.2 bits (121), Expect = 5.070e-5
Identity = 29/87 (33.33%), Postives = 47/87 (54.02%), Query Frame = 1
Query:  109 LLHEQLGHVR--SLPTVARQQGI----RLSGKLGICSACEKGKASKQPVKKYREERTTEPFELVHTDIAGPVD-KSFGGCRFAIIFV 348
            L H + GHV   +L  +   + +    ++     IC  C  GK +++P  K    R +EP +L+H+DI GP+  +S GGCR+ I F+
Sbjct:  356 LWHRRYGHVNFETLHDMGMNETVSGLPKIDKSSHICEGCIFGKHARKPFSKKAVWRASEPLQLIHSDICGPMKTQSIGGCRYFITFI 442          
BLAST of mRNA_H-paniculata_contig19239.4847.1 vs. uniprot
Match: A0A328KVD4_9BACI (gag_pre-integrs domain-containing protein (Fragment) n=2 Tax=Bacillus sp. SRB_8 TaxID=1969377 RepID=A0A328KVD4_9BACI)

HSP 1 Score: 48.5 bits (114), Expect = 5.810e-5
Identity = 30/87 (34.48%), Postives = 48/87 (55.17%), Query Frame = 1
Query:  109 LLHEQLGH-----VRSLPTV-ARQQGIRL-SGKLGICSACEKGKASKQPVKKYREERTTEPFELVHTDIAGPV-DKSFGGCRFAIIF 345
            + H + GH     ++ LP+  +   GI++ S +   C +C +GK  +QP  K R    T+PFE+V +DI GP+ + S  G R+ I F
Sbjct:    1 MAHRRFGHASNERLQHLPSATSTTDGIKINSNERTFCDSCAQGKTRRQPFPKARRTNPTKPFEIVSSDIKGPILEPSKEGFRYYISF 87          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19239.4847.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A1X7TQ29_AMPQE2.220e-832.28gag_pre-integrs domain-containing protein n=1 Tax=... [more]
A0A4Q2D651_9AGAR1.030e-737.36Integrase catalytic domain-containing protein (Fra... [more]
A0A7D9J652_PARCT3.690e-736.63Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A8H8JVA7_9AGAM2.700e-533.71Pol polyprotein/retrotransposon n=1 Tax=Ceratobasi... [more]
A0A251TN47_HELAN2.750e-534.67Putative zinc finger, CCHC-type n=2 Tax=Helianthus... [more]
A0A540LT53_MALBA2.770e-535.23Uncharacterized protein n=1 Tax=Malus baccata TaxI... [more]
UPI000D08D0733.700e-535.23uncharacterized protein LOC112171370 n=1 Tax=Rosa ... [more]
UPI000D0898A53.760e-532.58uncharacterized protein LOC112199671 n=1 Tax=Rosa ... [more]
A0A251T2S6_HELAN5.070e-533.33Putative zinc finger, CCHC-type n=1 Tax=Helianthus... [more]
A0A328KVD4_9BACI5.810e-534.48gag_pre-integrs domain-containing protein (Fragmen... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19239contigH-paniculata_contig19239:23..370 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size348
Cds size348
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929468.9645622-CDS-H-paniculata_contig19239:22..3701622929468.9645622-CDS-H-paniculata_contig19239:22..370Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19239 23..370 -
1691480874.9203765-CDS-H-paniculata_contig19239:22..3701691480874.9203765-CDS-H-paniculata_contig19239:22..370Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19239 23..370 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19239.4847.1prot_H-paniculata_contig19239.4847.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19239 23..370 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19239.4847.1

>prot_H-paniculata_contig19239.4847.1 ID=prot_H-paniculata_contig19239.4847.1|Name=mRNA_H-paniculata_contig19239.4847.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=116bp
AAKRTIGKQVKVLRLFSNDCTTPKNNEKRQQVVDTKLLHEQLGHVRSLPT
VARQQGIRLSGKLGICSACEKGKASKQPVKKYREERTTEPFELVHTDIAG
PVDKSFGGCRFAIIFV
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mRNA from alignment at H-paniculata_contig19239:23..370-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19239.4847.1 ID=mRNA_H-paniculata_contig19239.4847.1|Name=mRNA_H-paniculata_contig19239.4847.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=348bp|location=Sequence derived from alignment at H-paniculata_contig19239:23..370- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCGCAAAGCGGACCATTGGAAAACAAGTGAAGGTTCTTCGATTATTCAG CAACGACTGCACCACCCCGAAGAACAATGAGAAGAGGCAACAGGTGGTGG ATACCAAGTTACTACACGAGCAACTTGGGCATGTTCGAAGCCTTCCCACA GTCGCGCGGCAGCAAGGCATAAGGTTAAGCGGGAAGCTCGGTATCTGCTC GGCGTGTGAGAAGGGGAAAGCGTCGAAGCAGCCCGTAAAAAAGTATCGAG AAGAGCGGACGACCGAGCCGTTTGAGCTGGTGCACACCGACATAGCCGGA CCGGTAGACAAGTCCTTCGGAGGATGTCGCTTCGCCATCATCTTCGTC
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Coding sequence (CDS) from alignment at H-paniculata_contig19239:23..370-

>mRNA_H-paniculata_contig19239.4847.1 ID=mRNA_H-paniculata_contig19239.4847.1|Name=mRNA_H-paniculata_contig19239.4847.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=696bp|location=Sequence derived from alignment at H-paniculata_contig19239:23..370- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCGCAAAGCGGACCATTGGAAAACAAGTGAAGGTTCTTCGATTATTCAG
CAACGACTGCACCACCCCGAAGAACAATGAGAAGAGGCAACAGGTGGTGG
ATACCAAGTTACTACACGAGCAACTTGGGCATGTTCGAAGCCTTCCCACA
GTCGCGCGGCAGCAAGGCATAAGGTTAAGCGGGAAGCTCGGTATCTGCTC
GGCGTGTGAGAAGGGGAAAGCGTCGAAGCAGCCCGTAAAAAAGTATCGAG
AAGAGCGGACGACCGAGCCGTTTGAGCTGGTGCACACCGACATAGCCGGA
CCGGTAGACAAGTCCTTCGGAGGATGTCGCTTCGCCATCATCTTCGTCGC
CGCAAAGCGGACCATTGGAAAACAAGTGAAGGTTCTTCGATTATTCAGCA
ACGACTGCACCACCCCGAAGAACAATGAGAAGAGGCAACAGGTGGTGGAT
ACCAAGTTACTACACGAGCAACTTGGGCATGTTCGAAGCCTTCCCACAGT
CGCGCGGCAGCAAGGCATAAGGTTAAGCGGGAAGCTCGGTATCTGCTCGG
CGTGTGAGAAGGGGAAAGCGTCGAAGCAGCCCGTAAAAAAGTATCGAGAA
GAGCGGACGACCGAGCCGTTTGAGCTGGTGCACACCGACATAGCCGGACC
GGTAGACAAGTCCTTCGGAGGATGTCGCTTCGCCATCATCTTCGTC
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