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Homology
BLAST of mRNA_H-paniculata_contig19184.4822.1 vs. uniprot
Match: D8LB68_ECTSI (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB68_ECTSI) HSP 1 Score: 154 bits (389), Expect = 1.560e-39 Identity = 72/97 (74.23%), Postives = 84/97 (86.60%), Query Frame = 1
Query: 1 QVFPEMDILSILPPYLRIPAVLYAYRASLPRLPLLCKIEEGFPGFLGIMLPRLRPGEYAKGDTIVSPRLVAQEMGFVLHGICDAAAAETGETLETYR 291
VFPE +ILSILPPYLRIPAVLYAYR ++PRLPLLCKIE +PGFL +MLPRL+PGEY KGD IVS RL AQEMGFVLHG+C+ +A+TGET++ YR
Sbjct: 1657 SVFPENEILSILPPYLRIPAVLYAYRTAVPRLPLLCKIEMSYPGFLAMMLPRLKPGEYVKGDLIVSRRLAAQEMGFVLHGVCEETSADTGETIQNYR 1753
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 148.7 |
| Seed ortholog evalue | 3.1e-33 |
| Seed eggNOG ortholog | 2880.D8LB68 |
| Hectar predicted targeting category | other localisation |
| EggNOG free text desc. | voltage-gated potassium channel activity |
| EggNOG OGs | KOG0498@1,KOG0498@2759 |
| COG Functional cat. | U |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Exons | 4 |
| Model size | 648 |
| Cds size | 633 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig19184.4822.1 >prot_H-paniculata_contig19184.4822.1 ID=prot_H-paniculata_contig19184.4822.1|Name=mRNA_H-paniculata_contig19184.4822.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=211bp
MDILSILPPYLRIPAVLYAYRASLPRLPLLCKIEEGFPGFLGIMLPRLRP
GEYAKGDTIVSPRLVAQEMGFVLHGICDAAAAETGETLETYREGQYLGHA
TLLVPDGVTFKILVEVKASMRVEMLFLHKSDFDWLLTFYPPPMEKFRDEL
TDWEQLLRWISLPKVFTKKIKRLLGRAPSIIGGGQTDHSNSDRGKYSAAG
LAAAIIAASGR back to topmRNA from alignment at H-paniculata_contig19184:2100..4681+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig19184.4822.1 ID=mRNA_H-paniculata_contig19184.4822.1|Name=mRNA_H-paniculata_contig19184.4822.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2582bp|location=Sequence derived from alignment at H-paniculata_contig19184:2100..4681+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTTTTCCCTGAGATGGACATATTGTCCATCCTGCCGCCATACCTCCG
TATTCCGGCTGTCCTGTACGCGTACCGCGCATCGCTTCCGAGATTGCCCC
TGCTCTGCAAGATAGAGGAGGGTTTTCCTGGGTTTCTGGGGATAATGGTG
AGAAAAGTTTTCTTTTTGCCAGATTTGACAAGGTTTGGCTGCAGTTTAAT
TGTATGTGTCATTGAGTTGTTGAAACATTTGGTTATTTCAAAACATGCTG
AAACCAAGGAACAATGGCCAATTGCGTTCTGGAAGCGAGTTTTTACGCGA
GTTCCTGCCCATGTACTCAATCTAGACCAATATGCAGCCATTACGCAGCC
TGTGGAGCCTGTACAGTCAGAGCGATGGGTATTCAAGTCATATTCTACCA
CTACATTGGGTGCCAGGCCCGTTCAAAAATGCCCAACCTCTTGCCCTTCC
AATTCTCGTCCCCATACCCGTTTCCGCCAACTCTCTTTACCTTTCACCCA
ACTACCGTCCACCTAAAATATCATCAACGGACCATGACACCCACATCCAC
AAGTTGCCACGTTTGAGGCCGGGAGAGTACGCAAAAGGAGACACAATTGT
TTCTCCTCGCCTGGTGGCGCAAGAGATGGGTTTTGTGCTGCATGGGATTT
GCGATGCGGCCGCTGCGGAAACAGGGGAAACACTCGAGACTTACAGGTCG
GTGATCAGGCGATTGGTGGGGAGTATTTACTAACGTGCATACATCACCAC
CGCCACGACAAGCGAGTAAACAAAATCAACGAGAATAACGCCGACTTCAC
GTTCGTACATATATCTACCTTCTTGCAAAAAACAAGTTCAATTACTTTCA
CCATCGTTATATGTTGTTTTTCAGTGATCTGGGTCGTCTAGGAAAACTCC
ATCGATTATTGTACAGTCAGTGACATCATAGATATGAGTTGCAGATACAA
CACAGCGAGAACCACTGCGTCTTGTTAACATTACGAGTCCTCAATGACCA
CCTAGCTAGATAAACAACTAACGCAAGCGATAAGAAAACCTCCCCCTCTC
CAAGCGCGTGCACCTCGTTTTCGAAGTTATTTGTGTCGTATATATATTAC
TCTTGATGAAGTGTATGCGGTAAGTTCTAACCCCGCCCTACCCCGCGCGT
GGCTACTGACTATCGACAGAGAGGGACAGTATCTCGGGCACGCAACCCTG
CTTGTGCCCGACGGGGTTACTTTCAAGATTCTGGTAGAAGTAAAGGCATC
GATGCGGGTGGAGATGCTCTTCCTACATAAGTCAGACTTCGATTGGCTGT
TAACTTTTTATCCTCCCCCTATGGAGAAATTCCGGGACGAGCTCACGGAC
TGGGAGCAGCTCCTTCGGTGGATATCCCTTCCTAAGGTGATGAAAAAACC
AACGGATACGATGTCTCACTTGATTTCGACGAAATTTACACTGGGATTTT
GGTGCTGTAGATTTCACCTGAATTTATGTACACTAGTTTGCAGGTCGCTC
AATTTGGGATGTTGAAATATTGAATGTTTTATCTTGACTCCTTATATTGA
CATTTCCTCCGGTCGGGATAGGTGGCCCAATACAAGGTGCGATGTCCATC
CTGCTGAATTGTTCGATTTTTCACCTCCAAACGTGCTGCATCGATTGTTG
AGTGCTAACCCCGAAGCGCTGCCACGGCGTCATGCGCATGCGTTGGTTAG
CGACTTTCCTTCGAAACATGCTGAGTCGCTATCGAAGAGAACATGTTCAA
CAAGAACGAGACCCAGTGGCATGCACATTCCAAATTGAAGTAGCAATTGA
TCTCCACTCTAATAACAGTATTATTAGTATGTACTATACCACTGTACTGT
ACAGTACCCTCCCTGTAATATATATGTAACTTTGCACTCAAACTAGTAGT
ATCTAACCACATCGATCGGTGTAGCTTAATTAATTGTCCTCAAAGCTCTT
AAATTGTATCCCTCACATTTCACTGATTGCAACGTACTCTGCACCGCCAA
TATATATCATAATATGTTTATTACCATATTGACGAACAACTCAAGAACGG
TACGCCACACACAGGTGTGACCCAAAACAACTGATTTCTCCTACACTTAG
TAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTATTTACTAAT
CATATTTTTTGTCGGATCCGGATAGACAATATTTGAAGGTTAATTGGCAA
TTCTGATAATCCTGTTTAGTAGACATTAACCGAATGGGATTATTTTGATT
TATCTTGTATCTACTATAATTCCAACCGCAAGCGCATCCCAGTAAAATAA
TACGAATCTGCGGACAAACTTTCAAACCGTATGGAAGGAATTGAGCTAAA
TACTGAACTTCCAACATAATATGATTTTCACCTTGTCACATGTTCTTCTT
GCCATGCGTGTACTACTTACTGACGCTGTCTAATGGTCAAGGTCTTTACG
AAAAAGATAAAACGTCTTTTAGGGCGGGCACCCTCTATCATAGGAGGAGG
ACAAACTGATCACAGCAACTCCGATCGAGGGAAATACTCAGCGGCCGGCT
TGGCAGCAGCGATTATTGCAGCATCAGGGCGT back to topCoding sequence (CDS) from alignment at H-paniculata_contig19184:2100..4681+ >mRNA_H-paniculata_contig19184.4822.1 ID=mRNA_H-paniculata_contig19184.4822.1|Name=mRNA_H-paniculata_contig19184.4822.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1266bp|location=Sequence derived from alignment at H-paniculata_contig19184:2100..4681+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACATATTGTCCATCCTGCCGCCATACCTCCGTATTCCGGCTGTCCT
GTACGCGTACCGCGCATCGCTTCCGAGATTGCCCCTGCTCTGCAAGATAG
AGGAGGGTTTTCCTGGGTTTCTGGGGATAATGATGGACATATTGTCCATC
CTGCCGCCATACCTCCGTATTCCGGCTGTCCTGTACGCGTACCGCGCATC
GCTTCCGAGATTGCCCCTGCTCTGCAAGATAGAGGAGGGTTTTCCTGGGT
TTCTGGGGATAATGTTGCCACGTTTGAGGCCGGGAGAGTACGCAAAAGGA
GACACAATTGTTTCTCCTCGCCTGGTGGCGCAAGAGATGGGTTTTGTGCT
GCATGGGATTTGCGATGCGGCCGCTGCGGAAACAGGGGAAACACTCGAGA
CTTACAGTTGCCACGTTTGAGGCCGGGAGAGTACGCAAAAGGAGACACAA
TTGTTTCTCCTCGCCTGGTGGCGCAAGAGATGGGTTTTGTGCTGCATGGG
ATTTGCGATGCGGCCGCTGCGGAAACAGGGGAAACACTCGAGACTTACAG
AGAGGGACAGTATCTCGGGCACGCAACCCTGCTTGTGCCCGACGGGGTTA
CTTTCAAGATTCTGGTAGAAGTAAAGGCATCGATGCGGGTGGAGATGCTC
TTCCTACATAAGTCAGACTTCGATTGGCTGTTAACTTTTTATCCTCCCCC
TATGGAGAAATTCCGGGACGAGCTCACGGACTGGGAGCAGCTCCTTCGGT
GGATATCCCTTCCTAAGAGAGGGACAGTATCTCGGGCACGCAACCCTGCT
TGTGCCCGACGGGGTTACTTTCAAGATTCTGGTAGAAGTAAAGGCATCGA
TGCGGGTGGAGATGCTCTTCCTACATAAGTCAGACTTCGATTGGCTGTTA
ACTTTTTATCCTCCCCCTATGGAGAAATTCCGGGACGAGCTCACGGACTG
GGAGCAGCTCCTTCGGTGGATATCCCTTCCTAAGGTCTTTACGAAAAAGA
TAAAACGTCTTTTAGGGCGGGCACCCTCTATCATAGGAGGAGGACAAACT
GATCACAGCAACTCCGATCGAGGGAAATACTCAGCGGCCGGCTTGGCAGC
AGCGATTATTGCAGCATCAGGGCGTGTCTTTACGAAAAAGATAAAACGTC
TTTTAGGGCGGGCACCCTCTATCATAGGAGGAGGACAAACTGATCACAGC
AACTCCGATCGAGGGAAATACTCAGCGGCCGGCTTGGCAGCAGCGATTAT
TGCAGCATCAGGGCGT back to top
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