mRNA_H-paniculata_contig19169.4813.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig19169.4813.1 vs. uniprot
Match: A0A816R0P7_9BILA (Hypothetical protein n=1 Tax=Rotaria magnacalcarata TaxID=392030 RepID=A0A816R0P7_9BILA) HSP 1 Score: 125 bits (315), Expect = 2.060e-32 Identity = 65/127 (51.18%), Postives = 88/127 (69.29%), Query Frame = 1
Query: 154 EDRKSTTRYVFKLNGGALSLCSRKQQLVTWSSTEAEYVAVGEAGKETVYLRELLGLIGFGCRGSTTLYEDNKSAINLSKGSDPHCRTKHIGVRWHGIREWIREGILALKYVQTGDQLADILTKGLNR 534
EDRKSTT Y+F LNG +S S+KQQ V SSTEAEY+A+ A KE ++LR+LL +G G TT+YEDN+S I ++ + H RTKHI V++H IR+ I+ +A+K+ T +QLAD +TK L R
Sbjct: 104 EDRKSTTGYLFLLNGSPISWTSKKQQTVALSSTEAEYIALAHATKEAIWLRKLLKDLGQEQIGPTTIYEDNQSTIAIANNTINHQRTKHIDVQFHFIRDKIKSNEIAVKHTSTNEQLADAMTKPLGR 230
BLAST of mRNA_H-paniculata_contig19169.4813.1 vs. uniprot
Match: A0A4Y9ZY34_9AGAM (Integrase catalytic domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZY34_9AGAM) HSP 1 Score: 129 bits (324), Expect = 3.180e-31 Identity = 65/131 (49.62%), Postives = 87/131 (66.41%), Query Frame = 1
Query: 148 DVEDRKSTTRYVFKLNGGALSLCSRKQQLVTWSSTEAEYVAVGEAGKETVYLRELLGLIGFGCRGSTTLYEDNKSAINLSKGSDPHCRTKHIGVRWHGIREWIREGILALKYVQTGDQLADILTKGLNRVQ 540
DV DR+S + Y F L GGA+S S+KQ SSTEAEY+A A KE +LR LG IG C+ +T L DN+SA+ +++ H RTKHI VR+H +RE + G + L+YV TGDQ+AD+LTKGL + +
Sbjct: 994 DVNDRRSISGYTFLLAGGAVSWSSKKQNTTALSSTEAEYIAAAHAAKEATWLRTFLGEIGRPCKTATLLLMDNQSAMAIARNPAFHARTKHIDVRYHFLREKVEAGAINLQYVPTGDQVADVLTKGLVKAK 1124
BLAST of mRNA_H-paniculata_contig19169.4813.1 vs. uniprot
Match: A0A0J7KRG1_LASNI (Integrase core domain protein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KRG1_LASNI) HSP 1 Score: 129 bits (324), Expect = 3.300e-31 Identity = 65/136 (47.79%), Postives = 91/136 (66.91%), Query Frame = 1
Query: 148 DVEDRKSTTRYVFKLNGGALSLCSRKQQLVTWSSTEAEYVAVGEAGKETVYLRELLGLIGFGCRGSTTLYEDNKSAINLSKGSDPHCRTKHIGVRWHGIREWIREGILALKYVQTGDQLADILTKGLNRVQLQRLR 555
D+E R+STT Y+F L G ++ SR+Q++VT S+TEAEY+A A KE V+LR LL +G+ C T LY DN+SAI ++K + H RTKHI VR+H IR+ + + + YV + Q ADILTK L++ +RLR
Sbjct: 1469 DLETRRSTTGYLFSLASGPVTWSSRRQKIVTLSTTEAEYIAASSAAKEAVWLRNLLDEVGYRCDSPTVLYVDNQSAIKIAKNPEFHERTKHIDVRYHHIRKMVENAAIQVLYVPSEMQKADILTKALSKESFRRLR 1604
BLAST of mRNA_H-paniculata_contig19169.4813.1 vs. uniprot
Match: UPI0009AB427F (uncharacterized protein LOC109950541 n=1 Tax=Prunus persica TaxID=3760 RepID=UPI0009AB427F) HSP 1 Score: 124 bits (312), Expect = 3.590e-31 Identity = 63/139 (45.32%), Postives = 97/139 (69.78%), Query Frame = 1
Query: 148 DVEDRKSTTRYVFKLNGGALSLCSRKQQLVTWSSTEAEYVAVGEAGKETVYLRELLGLIGFGCRGSTTLYEDNKSAINLSKGSDPHCRTKHIGVRWHGIREWIREGILALKYVQTGDQLADILTKGLNRVQLQRLRILL 564
D++DRKST+ ++F LN GA+S S+KQQ+VT SSTEAEYVA + + ++LR++ ++G +G TT+Y DN S I LS+ H R+KHI VR+H +R+ + + L+Y ++G+Q+ADILTK L + ++LR +L
Sbjct: 175 DIDDRKSTSGHIFLLNSGAISWSSKKQQIVTLSSTEAEYVAAAASSCQAMWLRKIFEVLGNVQKGPTTIYCDNISTIKLSRNPVMHGRSKHIDVRFHFLRDLCSDEKIVLEYCKSGEQVADILTKPLKQPAFEKLRSML 313
BLAST of mRNA_H-paniculata_contig19169.4813.1 vs. uniprot
Match: A0A6D2JBX5_9BRAS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2JBX5_9BRAS) HSP 1 Score: 125 bits (313), Expect = 5.890e-31 Identity = 65/136 (47.79%), Postives = 91/136 (66.91%), Query Frame = 1
Query: 148 DVEDRKSTTRYVFKLNGGALSLCSRKQQLVTWSSTEAEYVAVGEAGKETVYLRELLGLIGFGCRGSTTLYEDNKSAINLSKGSDPHCRTKHIGVRWHGIREWIREGILALKYVQTGDQLADILTKGLNRVQLQRLR 555
DV+DRKST+ YVF L GGA+S S+KQ +VT S+TEAE+VA + ++LR +LG IG+ TTL+ DN S I LSK H R+KHI VR++ +R+ + E ++ LK+ T DQL+DI+TK + +RLR
Sbjct: 231 DVDDRKSTSGYVFMLGGGAVSWASKKQPIVTLSTTEAEFVAAAYGACQAMWLRNILGEIGWAQEEGTTLFCDNSSTIKLSKNPVLHGRSKHIHVRYYFLRDLVNEEVILLKFCGTEDQLSDIMTKAVKLEVFERLR 366
BLAST of mRNA_H-paniculata_contig19169.4813.1 vs. uniprot
Match: UPI0006A737CF (uncharacterized mitochondrial protein AtMg00810-like n=1 Tax=Brassica oleracea var. oleracea TaxID=109376 RepID=UPI0006A737CF) HSP 1 Score: 124 bits (311), Expect = 6.560e-31 Identity = 65/136 (47.79%), Postives = 89/136 (65.44%), Query Frame = 1
Query: 148 DVEDRKSTTRYVFKLNGGALSLCSRKQQLVTWSSTEAEYVAVGEAGKETVYLRELLGLIGFGCRGSTTLYEDNKSAINLSKGSDPHCRTKHIGVRWHGIREWIREGILALKYVQTGDQLADILTKGLNRVQLQRLR 555
D +DRKST+ + F GGA+S S+KQ +VT S+TEAEYVA + V++R +L IGFG T L+ DN SAI LSK H R+KHI VR+H +RE + EGI++ +Y T +QLADI+TK + ++LR
Sbjct: 199 DEDDRKSTSGFTFMFGGGAVSWSSKKQPIVTLSTTEAEYVAAANGACQAVWMRNMLTEIGFGQGDGTVLFCDNSSAIKLSKNLVLHGRSKHIHVRFHFLRELVNEGIISTEYCSTHEQLADIMTKPVKLEVFEKLR 334
BLAST of mRNA_H-paniculata_contig19169.4813.1 vs. uniprot
Match: A0A1J3D358_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3D358_NOCCA) HSP 1 Score: 126 bits (317), Expect = 7.340e-31 Identity = 65/136 (47.79%), Postives = 91/136 (66.91%), Query Frame = 1
Query: 148 DVEDRKSTTRYVFKLNGGALSLCSRKQQLVTWSSTEAEYVAVGEAGKETVYLRELLGLIGFGCRGSTTLYEDNKSAINLSKGSDPHCRTKHIGVRWHGIREWIREGILALKYVQTGDQLADILTKGLNRVQLQRLR 555
D++D KST+ YVF L+GGA++ SRKQ +VT SSTEAEYVA + ++++ +LG IGF TL+ DN S I LSK + H ++KHI VR+H +RE +EG++ L + T +QLADI+TK L QR+R
Sbjct: 347 DIDDCKSTSGYVFLLSGGAVAWSSRKQPIVTLSSTEAEYVAAATCACQAIWMKRVLGEIGFEQEDGMTLFCDNTSTIKLSKNAVMHGKSKHIRVRYHFLRELSKEGLVTLVHCNTEEQLADIMTKPLKMASFQRIR 482
BLAST of mRNA_H-paniculata_contig19169.4813.1 vs. uniprot
Match: A0A7D9JFU5_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9JFU5_PARCT) HSP 1 Score: 126 bits (317), Expect = 1.100e-30 Identity = 67/139 (48.20%), Postives = 92/139 (66.19%), Query Frame = 1
Query: 148 DVEDRKSTTRYVFKLNGGALSLCSRKQQLVTWSSTEAEYVAVGEAGKETVYLRELLGLIGFGCRGSTTLYEDNKSAINLSKGSDPHCRTKHIGVRWHGIREWIREGILALKYVQTGDQLADILTKGLNRVQLQRLRILL 564
DV+ R+ST+ YVFK+ +S CS+KQ VT S+TEAEYVA+ +A +E +++R LL IG TT+YEDN+ AI +SK + H RTKHI VR+H +RE + + + Y T LADI+TKGL + QRLR +L
Sbjct: 392 DVDSRRSTSGYVFKVANSTVSWCSKKQASVTKSTTEAEYVALSQATQEAIWMRRLLSDIGCKSEEPTTMYEDNQGAIEISKNARFHNRTKHIDVRFHFVREKVLSNEVKVIYCPTEHMLADIMTKGLTKKIFQRLRSML 530
BLAST of mRNA_H-paniculata_contig19169.4813.1 vs. uniprot
Match: A0A7J0H598_9ERIC (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Actinidia rufa TaxID=165716 RepID=A0A7J0H598_9ERIC) HSP 1 Score: 127 bits (319), Expect = 1.220e-30 Identity = 71/166 (42.77%), Postives = 100/166 (60.24%), Query Frame = 1
Query: 106 VTVWKDSLMPIGGE-------------DVEDRKSTTRYVFKLNGGALSLCSRKQQLVTWSSTEAEYVAVGEAGKETVYLRELLGLIGFGCRGSTTLYEDNKSAINLSKGSDPHCRTKHIGVRWHGIREWIREGILALKYVQTGDQLADILTKGLNRVQLQRLRILL 564
+T + LM +GG D+EDRKST+ YVF ++ GA+S S+KQ +VT S+TEAE+VA + +++R +L +G RGSTT++ DN S I LSK H R KHI VR+H +R+ +EG + L Y T +Q+AD++TK L QRLR LL
Sbjct: 520 LTATRPDLMFVGGSENLVAYADSDYAGDLEDRKSTSGYVFLMSSGAVSWSSKKQPIVTLSTTEAEFVAAAYCASQVIWMRRILEKLGHSQRGSTTMFCDNSSTIKLSKNPVLHGRCKHIDVRFHFLRDLTKEGAVELVYCGTQEQVADVMTKPLKLEVFQRLRCLL 685
BLAST of mRNA_H-paniculata_contig19169.4813.1 vs. uniprot
Match: A0A1X7SFX4_AMPQE (Uncharacterized protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7SFX4_AMPQE) HSP 1 Score: 119 bits (299), Expect = 1.440e-30 Identity = 60/140 (42.86%), Postives = 92/140 (65.71%), Query Frame = 1
Query: 142 GEDVEDRKSTTRYVFKLNGGALSLCSRKQQLVTWSSTEAEYVAVGEAGKETVYLRELLGLIGFGCRGSTTLYEDNKSAINLSKGSDPHCRTKHIGVRWHGIREWIREGILALKYVQTGDQLADILTKGLNRVQLQRLRIL 561
G DV++ +STT Y+F++ G A+S S++Q V S+ EAEY+A+ +E V++REL + G TT++EDN+SAI+++K H R KHIG+++H IRE + + +KY +T D +ADI TKGL + +RLR L
Sbjct: 37 GGDVDNYRSTTGYIFQIGGVAVSWKSKRQDCVALSTAEAEYMALASTAQEAVWMRELNADMNNKPNGPTTIFEDNQSAISMAKNPQFHGRAKHIGIKYHFIREQVSTESVQIKYCRTEDMVADIFTKGLTHEKFERLRSL 176 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19169.4813.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig19169.4813.1 >prot_H-paniculata_contig19169.4813.1 ID=prot_H-paniculata_contig19169.4813.1|Name=mRNA_H-paniculata_contig19169.4813.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=156bp MVTVWKDSLMPIGGEDVEDRKSTTRYVFKLNGGALSLCSRKQQLVTWSSTback to top mRNA from alignment at H-paniculata_contig19169:4202..4771+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig19169.4813.1 ID=mRNA_H-paniculata_contig19169.4813.1|Name=mRNA_H-paniculata_contig19169.4813.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=570bp|location=Sequence derived from alignment at H-paniculata_contig19169:4202..4771+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig19169:4202..4771+ >mRNA_H-paniculata_contig19169.4813.1 ID=mRNA_H-paniculata_contig19169.4813.1|Name=mRNA_H-paniculata_contig19169.4813.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=936bp|location=Sequence derived from alignment at H-paniculata_contig19169:4202..4771+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |