mRNA_H-paniculata_contig19169.4813.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19169.4813.1
Unique NamemRNA_H-paniculata_contig19169.4813.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig19169.4813.1 vs. uniprot
Match: A0A816R0P7_9BILA (Hypothetical protein n=1 Tax=Rotaria magnacalcarata TaxID=392030 RepID=A0A816R0P7_9BILA)

HSP 1 Score: 125 bits (315), Expect = 2.060e-32
Identity = 65/127 (51.18%), Postives = 88/127 (69.29%), Query Frame = 1
Query:  154 EDRKSTTRYVFKLNGGALSLCSRKQQLVTWSSTEAEYVAVGEAGKETVYLRELLGLIGFGCRGSTTLYEDNKSAINLSKGSDPHCRTKHIGVRWHGIREWIREGILALKYVQTGDQLADILTKGLNR 534
            EDRKSTT Y+F LNG  +S  S+KQQ V  SSTEAEY+A+  A KE ++LR+LL  +G    G TT+YEDN+S I ++  +  H RTKHI V++H IR+ I+   +A+K+  T +QLAD +TK L R
Sbjct:  104 EDRKSTTGYLFLLNGSPISWTSKKQQTVALSSTEAEYIALAHATKEAIWLRKLLKDLGQEQIGPTTIYEDNQSTIAIANNTINHQRTKHIDVQFHFIRDKIKSNEIAVKHTSTNEQLADAMTKPLGR 230          
BLAST of mRNA_H-paniculata_contig19169.4813.1 vs. uniprot
Match: A0A4Y9ZY34_9AGAM (Integrase catalytic domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZY34_9AGAM)

HSP 1 Score: 129 bits (324), Expect = 3.180e-31
Identity = 65/131 (49.62%), Postives = 87/131 (66.41%), Query Frame = 1
Query:  148 DVEDRKSTTRYVFKLNGGALSLCSRKQQLVTWSSTEAEYVAVGEAGKETVYLRELLGLIGFGCRGSTTLYEDNKSAINLSKGSDPHCRTKHIGVRWHGIREWIREGILALKYVQTGDQLADILTKGLNRVQ 540
            DV DR+S + Y F L GGA+S  S+KQ     SSTEAEY+A   A KE  +LR  LG IG  C+ +T L  DN+SA+ +++    H RTKHI VR+H +RE +  G + L+YV TGDQ+AD+LTKGL + +
Sbjct:  994 DVNDRRSISGYTFLLAGGAVSWSSKKQNTTALSSTEAEYIAAAHAAKEATWLRTFLGEIGRPCKTATLLLMDNQSAMAIARNPAFHARTKHIDVRYHFLREKVEAGAINLQYVPTGDQVADVLTKGLVKAK 1124          
BLAST of mRNA_H-paniculata_contig19169.4813.1 vs. uniprot
Match: A0A0J7KRG1_LASNI (Integrase core domain protein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KRG1_LASNI)

HSP 1 Score: 129 bits (324), Expect = 3.300e-31
Identity = 65/136 (47.79%), Postives = 91/136 (66.91%), Query Frame = 1
Query:  148 DVEDRKSTTRYVFKLNGGALSLCSRKQQLVTWSSTEAEYVAVGEAGKETVYLRELLGLIGFGCRGSTTLYEDNKSAINLSKGSDPHCRTKHIGVRWHGIREWIREGILALKYVQTGDQLADILTKGLNRVQLQRLR 555
            D+E R+STT Y+F L  G ++  SR+Q++VT S+TEAEY+A   A KE V+LR LL  +G+ C   T LY DN+SAI ++K  + H RTKHI VR+H IR+ +    + + YV +  Q ADILTK L++   +RLR
Sbjct: 1469 DLETRRSTTGYLFSLASGPVTWSSRRQKIVTLSTTEAEYIAASSAAKEAVWLRNLLDEVGYRCDSPTVLYVDNQSAIKIAKNPEFHERTKHIDVRYHHIRKMVENAAIQVLYVPSEMQKADILTKALSKESFRRLR 1604          
BLAST of mRNA_H-paniculata_contig19169.4813.1 vs. uniprot
Match: UPI0009AB427F (uncharacterized protein LOC109950541 n=1 Tax=Prunus persica TaxID=3760 RepID=UPI0009AB427F)

HSP 1 Score: 124 bits (312), Expect = 3.590e-31
Identity = 63/139 (45.32%), Postives = 97/139 (69.78%), Query Frame = 1
Query:  148 DVEDRKSTTRYVFKLNGGALSLCSRKQQLVTWSSTEAEYVAVGEAGKETVYLRELLGLIGFGCRGSTTLYEDNKSAINLSKGSDPHCRTKHIGVRWHGIREWIREGILALKYVQTGDQLADILTKGLNRVQLQRLRILL 564
            D++DRKST+ ++F LN GA+S  S+KQQ+VT SSTEAEYVA   +  + ++LR++  ++G   +G TT+Y DN S I LS+    H R+KHI VR+H +R+   +  + L+Y ++G+Q+ADILTK L +   ++LR +L
Sbjct:  175 DIDDRKSTSGHIFLLNSGAISWSSKKQQIVTLSSTEAEYVAAAASSCQAMWLRKIFEVLGNVQKGPTTIYCDNISTIKLSRNPVMHGRSKHIDVRFHFLRDLCSDEKIVLEYCKSGEQVADILTKPLKQPAFEKLRSML 313          
BLAST of mRNA_H-paniculata_contig19169.4813.1 vs. uniprot
Match: A0A6D2JBX5_9BRAS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2JBX5_9BRAS)

HSP 1 Score: 125 bits (313), Expect = 5.890e-31
Identity = 65/136 (47.79%), Postives = 91/136 (66.91%), Query Frame = 1
Query:  148 DVEDRKSTTRYVFKLNGGALSLCSRKQQLVTWSSTEAEYVAVGEAGKETVYLRELLGLIGFGCRGSTTLYEDNKSAINLSKGSDPHCRTKHIGVRWHGIREWIREGILALKYVQTGDQLADILTKGLNRVQLQRLR 555
            DV+DRKST+ YVF L GGA+S  S+KQ +VT S+TEAE+VA      + ++LR +LG IG+     TTL+ DN S I LSK    H R+KHI VR++ +R+ + E ++ LK+  T DQL+DI+TK +     +RLR
Sbjct:  231 DVDDRKSTSGYVFMLGGGAVSWASKKQPIVTLSTTEAEFVAAAYGACQAMWLRNILGEIGWAQEEGTTLFCDNSSTIKLSKNPVLHGRSKHIHVRYYFLRDLVNEEVILLKFCGTEDQLSDIMTKAVKLEVFERLR 366          
BLAST of mRNA_H-paniculata_contig19169.4813.1 vs. uniprot
Match: UPI0006A737CF (uncharacterized mitochondrial protein AtMg00810-like n=1 Tax=Brassica oleracea var. oleracea TaxID=109376 RepID=UPI0006A737CF)

HSP 1 Score: 124 bits (311), Expect = 6.560e-31
Identity = 65/136 (47.79%), Postives = 89/136 (65.44%), Query Frame = 1
Query:  148 DVEDRKSTTRYVFKLNGGALSLCSRKQQLVTWSSTEAEYVAVGEAGKETVYLRELLGLIGFGCRGSTTLYEDNKSAINLSKGSDPHCRTKHIGVRWHGIREWIREGILALKYVQTGDQLADILTKGLNRVQLQRLR 555
            D +DRKST+ + F   GGA+S  S+KQ +VT S+TEAEYVA      + V++R +L  IGFG    T L+ DN SAI LSK    H R+KHI VR+H +RE + EGI++ +Y  T +QLADI+TK +     ++LR
Sbjct:  199 DEDDRKSTSGFTFMFGGGAVSWSSKKQPIVTLSTTEAEYVAAANGACQAVWMRNMLTEIGFGQGDGTVLFCDNSSAIKLSKNLVLHGRSKHIHVRFHFLRELVNEGIISTEYCSTHEQLADIMTKPVKLEVFEKLR 334          
BLAST of mRNA_H-paniculata_contig19169.4813.1 vs. uniprot
Match: A0A1J3D358_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3D358_NOCCA)

HSP 1 Score: 126 bits (317), Expect = 7.340e-31
Identity = 65/136 (47.79%), Postives = 91/136 (66.91%), Query Frame = 1
Query:  148 DVEDRKSTTRYVFKLNGGALSLCSRKQQLVTWSSTEAEYVAVGEAGKETVYLRELLGLIGFGCRGSTTLYEDNKSAINLSKGSDPHCRTKHIGVRWHGIREWIREGILALKYVQTGDQLADILTKGLNRVQLQRLR 555
            D++D KST+ YVF L+GGA++  SRKQ +VT SSTEAEYVA      + ++++ +LG IGF      TL+ DN S I LSK +  H ++KHI VR+H +RE  +EG++ L +  T +QLADI+TK L     QR+R
Sbjct:  347 DIDDCKSTSGYVFLLSGGAVAWSSRKQPIVTLSSTEAEYVAAATCACQAIWMKRVLGEIGFEQEDGMTLFCDNTSTIKLSKNAVMHGKSKHIRVRYHFLRELSKEGLVTLVHCNTEEQLADIMTKPLKMASFQRIR 482          
BLAST of mRNA_H-paniculata_contig19169.4813.1 vs. uniprot
Match: A0A7D9JFU5_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9JFU5_PARCT)

HSP 1 Score: 126 bits (317), Expect = 1.100e-30
Identity = 67/139 (48.20%), Postives = 92/139 (66.19%), Query Frame = 1
Query:  148 DVEDRKSTTRYVFKLNGGALSLCSRKQQLVTWSSTEAEYVAVGEAGKETVYLRELLGLIGFGCRGSTTLYEDNKSAINLSKGSDPHCRTKHIGVRWHGIREWIREGILALKYVQTGDQLADILTKGLNRVQLQRLRILL 564
            DV+ R+ST+ YVFK+    +S CS+KQ  VT S+TEAEYVA+ +A +E +++R LL  IG      TT+YEDN+ AI +SK +  H RTKHI VR+H +RE +    + + Y  T   LADI+TKGL +   QRLR +L
Sbjct:  392 DVDSRRSTSGYVFKVANSTVSWCSKKQASVTKSTTEAEYVALSQATQEAIWMRRLLSDIGCKSEEPTTMYEDNQGAIEISKNARFHNRTKHIDVRFHFVREKVLSNEVKVIYCPTEHMLADIMTKGLTKKIFQRLRSML 530          
BLAST of mRNA_H-paniculata_contig19169.4813.1 vs. uniprot
Match: A0A7J0H598_9ERIC (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Actinidia rufa TaxID=165716 RepID=A0A7J0H598_9ERIC)

HSP 1 Score: 127 bits (319), Expect = 1.220e-30
Identity = 71/166 (42.77%), Postives = 100/166 (60.24%), Query Frame = 1
Query:  106 VTVWKDSLMPIGGE-------------DVEDRKSTTRYVFKLNGGALSLCSRKQQLVTWSSTEAEYVAVGEAGKETVYLRELLGLIGFGCRGSTTLYEDNKSAINLSKGSDPHCRTKHIGVRWHGIREWIREGILALKYVQTGDQLADILTKGLNRVQLQRLRILL 564
            +T  +  LM +GG              D+EDRKST+ YVF ++ GA+S  S+KQ +VT S+TEAE+VA      + +++R +L  +G   RGSTT++ DN S I LSK    H R KHI VR+H +R+  +EG + L Y  T +Q+AD++TK L     QRLR LL
Sbjct:  520 LTATRPDLMFVGGSENLVAYADSDYAGDLEDRKSTSGYVFLMSSGAVSWSSKKQPIVTLSTTEAEFVAAAYCASQVIWMRRILEKLGHSQRGSTTMFCDNSSTIKLSKNPVLHGRCKHIDVRFHFLRDLTKEGAVELVYCGTQEQVADVMTKPLKLEVFQRLRCLL 685          
BLAST of mRNA_H-paniculata_contig19169.4813.1 vs. uniprot
Match: A0A1X7SFX4_AMPQE (Uncharacterized protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7SFX4_AMPQE)

HSP 1 Score: 119 bits (299), Expect = 1.440e-30
Identity = 60/140 (42.86%), Postives = 92/140 (65.71%), Query Frame = 1
Query:  142 GEDVEDRKSTTRYVFKLNGGALSLCSRKQQLVTWSSTEAEYVAVGEAGKETVYLRELLGLIGFGCRGSTTLYEDNKSAINLSKGSDPHCRTKHIGVRWHGIREWIREGILALKYVQTGDQLADILTKGLNRVQLQRLRIL 561
            G DV++ +STT Y+F++ G A+S  S++Q  V  S+ EAEY+A+    +E V++REL   +     G TT++EDN+SAI+++K    H R KHIG+++H IRE +    + +KY +T D +ADI TKGL   + +RLR L
Sbjct:   37 GGDVDNYRSTTGYIFQIGGVAVSWKSKRQDCVALSTAEAEYMALASTAQEAVWMRELNADMNNKPNGPTTIFEDNQSAISMAKNPQFHGRAKHIGIKYHFIREQVSTESVQIKYCRTEDMVADIFTKGLTHEKFERLRSL 176          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19169.4813.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A816R0P7_9BILA2.060e-3251.18Hypothetical protein n=1 Tax=Rotaria magnacalcarat... [more]
A0A4Y9ZY34_9AGAM3.180e-3149.62Integrase catalytic domain-containing protein n=1 ... [more]
A0A0J7KRG1_LASNI3.300e-3147.79Integrase core domain protein n=1 Tax=Lasius niger... [more]
UPI0009AB427F3.590e-3145.32uncharacterized protein LOC109950541 n=1 Tax=Prunu... [more]
A0A6D2JBX5_9BRAS5.890e-3147.79Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI0006A737CF6.560e-3147.79uncharacterized mitochondrial protein AtMg00810-li... [more]
A0A1J3D358_NOCCA7.340e-3147.79Retrovirus-related Pol polyprotein from transposon... [more]
A0A7D9JFU5_PARCT1.100e-3048.20Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7J0H598_9ERIC1.220e-3042.77Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A1X7SFX4_AMPQE1.440e-3042.86Uncharacterized protein n=1 Tax=Amphimedon queensl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19169contigH-paniculata_contig19169:4202..4771 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score123.6
Seed ortholog evalue7.9e-26
Seed eggNOG ortholog7425.NV18849-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38DPC@33154,3BGB6@33208,3D5G4@33213,3SKEY@50557,41ZUZ@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Exons1
Model size570
Cds size468
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929465.4694223-UTR-H-paniculata_contig19169:4201..43031622929465.4694223-UTR-H-paniculata_contig19169:4201..4303Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19169 4202..4303 +
1691480873.3535664-UTR-H-paniculata_contig19169:4201..43031691480873.3535664-UTR-H-paniculata_contig19169:4201..4303Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19169 4202..4303 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929465.4846702-CDS-H-paniculata_contig19169:4303..47711622929465.4846702-CDS-H-paniculata_contig19169:4303..4771Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19169 4304..4771 +
1691480873.3650737-CDS-H-paniculata_contig19169:4303..47711691480873.3650737-CDS-H-paniculata_contig19169:4303..4771Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19169 4304..4771 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19169.4813.1prot_H-paniculata_contig19169.4813.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19169 4304..4771 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19169.4813.1

>prot_H-paniculata_contig19169.4813.1 ID=prot_H-paniculata_contig19169.4813.1|Name=mRNA_H-paniculata_contig19169.4813.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=156bp
MVTVWKDSLMPIGGEDVEDRKSTTRYVFKLNGGALSLCSRKQQLVTWSST
EAEYVAVGEAGKETVYLRELLGLIGFGCRGSTTLYEDNKSAINLSKGSDP
HCRTKHIGVRWHGIREWIREGILALKYVQTGDQLADILTKGLNRVQLQRL
RILLI*
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mRNA from alignment at H-paniculata_contig19169:4202..4771+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19169.4813.1 ID=mRNA_H-paniculata_contig19169.4813.1|Name=mRNA_H-paniculata_contig19169.4813.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=570bp|location=Sequence derived from alignment at H-paniculata_contig19169:4202..4771+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTATGGAGGACCCATGTCGAGAAGACTCCAGTACATGCAAGCGCATTTTT CGTTATCTCAGTACTGTGCCTGACTTAGGCATTACGTTCGGCGGTAAGAG TAATGGTCACGGTCTGGAAGGATTCGTTGATGCCGATTGGGGGGGAAGAT GTCGAGGACCGAAAGTCCACAACAAGATACGTTTTCAAGCTGAACGGTGG TGCATTAAGTTTGTGCTCTAGGAAGCAACAGTTAGTCACGTGGTCCAGTA CAGAGGCAGAATACGTTGCTGTAGGAGAAGCGGGGAAGGAGACGGTGTAT CTTAGGGAGTTACTAGGATTGATAGGTTTCGGATGCAGGGGGAGCACGAC ATTGTATGAGGACAATAAATCAGCTATTAATCTCAGTAAGGGATCTGACC CACACTGCAGGACAAAGCACATCGGAGTGCGCTGGCACGGAATTCGAGAG TGGATTCGGGAAGGAATATTGGCATTGAAATACGTGCAGACGGGCGATCA ACTTGCTGACATTTTAACAAAGGGACTAAACAGAGTACAGCTTCAGAGAC TGAGAATTTTACTCATTTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig19169:4202..4771+

>mRNA_H-paniculata_contig19169.4813.1 ID=mRNA_H-paniculata_contig19169.4813.1|Name=mRNA_H-paniculata_contig19169.4813.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=936bp|location=Sequence derived from alignment at H-paniculata_contig19169:4202..4771+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTCACGGTCTGGAAGGATTCGTTGATGCCGATTGGGGGGGAAGATGT
CGAGGACCGAAAGTCCACAACAAGATACGTTTTCAAGCTGAACGGTGGTG
CATTAAGTTTGTGCTCTAGGAAGCAACAGTTAGTCACGTGGTCCAGTACA
GAGGCAGAATACGTTGCTGTAGGAGAAGCGGGGAAGGAGACGGTGTATCT
TAGGGAGTTACTAGGATTGATAGGTTTCGGATGCAGGGGGAGCACGACAT
TGTATGAGGACAATAAATCAGCTATTAATCTCAGTAAGGGATCTGACCCA
CACTGCAGGACAAAGCACATCGGAGTGCGCTGGCACGGAATTCGAGAGTG
GATTCGGGAAGGAATATTGGCATTGAAATACGTGCAGACGGGCGATCAAC
TTGCTGACATTTTAACAAAGGGACTAAACAGAGTACAGCTTCAGAGACTG
AGAATTTTACTCATTTGAATGGTCACGGTCTGGAAGGATTCGTTGATGCC
GATTGGGGGGGAAGATGTCGAGGACCGAAAGTCCACAACAAGATACGTTT
TCAAGCTGAACGGTGGTGCATTAAGTTTGTGCTCTAGGAAGCAACAGTTA
GTCACGTGGTCCAGTACAGAGGCAGAATACGTTGCTGTAGGAGAAGCGGG
GAAGGAGACGGTGTATCTTAGGGAGTTACTAGGATTGATAGGTTTCGGAT
GCAGGGGGAGCACGACATTGTATGAGGACAATAAATCAGCTATTAATCTC
AGTAAGGGATCTGACCCACACTGCAGGACAAAGCACATCGGAGTGCGCTG
GCACGGAATTCGAGAGTGGATTCGGGAAGGAATATTGGCATTGAAATACG
TGCAGACGGGCGATCAACTTGCTGACATTTTAACAAAGGGACTAAACAGA
GTACAGCTTCAGAGACTGAGAATTTTACTCATTTGA
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