prot_H-paniculata_contig19165.4811.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig19165.4811.1
Unique Nameprot_H-paniculata_contig19165.4811.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length117
Homology
BLAST of mRNA_H-paniculata_contig19165.4811.1 vs. uniprot
Match: A0A7D9HG25_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HG25_PARCT)

HSP 1 Score: 79.0 bits (193), Expect = 9.020e-15
Identity = 36/77 (46.75%), Postives = 52/77 (67.53%), Query Frame = 0
Query:   10 LAAKHDFELEGMDVDVAYFNAPVEEELFVKLPPAFSPFSRD-ITFVRRLHKSLYGLKQSGRNWSNTLDDFLVGIGLV 85
            LAA++D  +  MDV  A+ +AP++ E+F++ P  F   S + +  V RL KSLYGLKQSGRNW+  LD++L+  G V
Sbjct:  243 LAAQYDLTVHQMDVKTAFLHAPIDHEIFMEQPMGFEELSENGVKLVYRLKKSLYGLKQSGRNWNRVLDEYLISDGFV 319          
BLAST of mRNA_H-paniculata_contig19165.4811.1 vs. uniprot
Match: A0A0S7FQF2_9TELE (POLX (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7FQF2_9TELE)

HSP 1 Score: 75.9 bits (185), Expect = 2.410e-14
Identity = 38/77 (49.35%), Postives = 51/77 (66.23%), Query Frame = 0
Query:   10 LAAKHDFELEGMDVDVAYFNAPVEEELFVKLPPAFSPFSRD-ITFVRRLHKSLYGLKQSGRNWSNTLDDFLVGIGLV 85
            LAA++D EL  MDV  AY +AP++ E+F++ P  F   +      V +L+KSLYGLKQSGRNW+  L DFL+ I  V
Sbjct:   10 LAAQYDLELHQMDVKTAYLHAPIDCEIFLEQPEGFEVVTETGEKLVCKLNKSLYGLKQSGRNWNKMLHDFLIEIDFV 86          
BLAST of mRNA_H-paniculata_contig19165.4811.1 vs. uniprot
Match: W7TJI6_9STRA (Retrotransposon ty1-copia subclass n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJI6_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 3.570e-14
Identity = 35/76 (46.05%), Postives = 50/76 (65.79%), Query Frame = 0
Query:    7 VFSLAAKHDFELEGMDVDVAYFNAPVEEELFVKLPPAFSPFSRD-ITFVRRLHKSLYGLKQSGRNWSNTLDDFLVG 81
            + +LA   D EL+ MDVD AY  + +EE+++VK PP +  +  +    + RLHKSLYGLKQSGRNW   +D++  G
Sbjct:  112 ILALACILDLELDNMDVDTAYLQSDLEEKIYVKQPPGYEQYGPNGEELLCRLHKSLYGLKQSGRNWHKKIDEWFRG 187          
BLAST of mRNA_H-paniculata_contig19165.4811.1 vs. uniprot
Match: A0A0S7FUV3_9TELE (COPIA n=2 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7FUV3_9TELE)

HSP 1 Score: 75.9 bits (185), Expect = 1.020e-13
Identity = 38/77 (49.35%), Postives = 51/77 (66.23%), Query Frame = 0
Query:   10 LAAKHDFELEGMDVDVAYFNAPVEEELFVKLPPAFSPFSRD-ITFVRRLHKSLYGLKQSGRNWSNTLDDFLVGIGLV 85
            LAA++D EL  MDV  AY +AP++ E+F++ P  F   +      V +L+KSLYGLKQSGRNW+  L DFL+ I  V
Sbjct:   10 LAAQYDLELHQMDVKTAYLHAPIDCEIFLEQPEGFEVVTETGEKLVCKLNKSLYGLKQSGRNWNKMLHDFLIEIDFV 86          
BLAST of mRNA_H-paniculata_contig19165.4811.1 vs. uniprot
Match: W7T0D1_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T0D1_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 1.180e-13
Identity = 39/82 (47.56%), Postives = 51/82 (62.20%), Query Frame = 0
Query:    7 VFSLAAKHDFELEGMDVDVAYFNAPVEEELFVKLPPAFSPF-SRDITFVRRLHKSLYGLKQSGRNWSNTLDDFLVGIGLVFH 87
            V +LA   D EL+ MDVD AY  + +EE++++K PP +  + S     V RL KSLYGLKQSGRNW   +D +  G G  FH
Sbjct:  328 VLALACILDLELDNMDVDTAYLQSDLEEKVYIKQPPGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYG--FH 407          
BLAST of mRNA_H-paniculata_contig19165.4811.1 vs. uniprot
Match: W7TJ26_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJ26_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 1.610e-13
Identity = 38/85 (44.71%), Postives = 52/85 (61.18%), Query Frame = 0
Query:    1 MSIFCTVFSLAAKHDFELEGMDVDVAYFNAPVEEELFVKLPPAFSPFSRDI-TFVRRLHKSLYGLKQSGRNWSNTLDDFLVGIGL 84
            M+    V +LA   D EL+ MDVD AY  + +EE++++K PP +  +  +    V RL KSLYGLKQSGRNW   +D +  G GL
Sbjct:  284 MTTIRLVLALACILDLELDNMDVDTAYLQSDLEEKVYIKQPPGYEKYGPNGGELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGL 368          
BLAST of mRNA_H-paniculata_contig19165.4811.1 vs. uniprot
Match: A0A6S7HLY2_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HLY2_PARCT)

HSP 1 Score: 75.1 bits (183), Expect = 2.160e-13
Identity = 33/77 (42.86%), Postives = 51/77 (66.23%), Query Frame = 0
Query:   10 LAAKHDFELEGMDVDVAYFNAPVEEELFVKLPPAFSPFSRD-ITFVRRLHKSLYGLKQSGRNWSNTLDDFLVGIGLV 85
            LAA+++  +  MDV  A+ + P++ E+F++ P  F   S + +  V RL KSLYGLKQSGRNW+  LD++L+  G +
Sbjct:  268 LAAQYNLTVHQMDVKTAFLHVPIDHEIFMEQPMGFEELSENGVKLVYRLKKSLYGLKQSGRNWNRVLDEYLISDGFI 344          
BLAST of mRNA_H-paniculata_contig19165.4811.1 vs. uniprot
Match: W7T9Y7_9STRA (Retrotransposon ty1-copia subclass n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T9Y7_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 4.360e-13
Identity = 36/82 (43.90%), Postives = 50/82 (60.98%), Query Frame = 0
Query:    7 VFSLAAKHDFELEGMDVDVAYFNAPVEEELFVKLPPAFSPFSRD-ITFVRRLHKSLYGLKQSGRNWSNTLDDFLVGIGLVFH 87
            + ++A   D EL+ MDVD AY  + +EE+++VK PP +  +  +    V  LHKSLYGLKQSG NW   +D +  G G  FH
Sbjct:   54 ILAIACILDLELDNMDVDTAYLQSDLEEKIYVKQPPGYEQYGPNGEELVCLLHKSLYGLKQSGINWHKKIDGWFRGYG--FH 133          
BLAST of mRNA_H-paniculata_contig19165.4811.1 vs. uniprot
Match: A0A7D9L0S1_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9L0S1_PARCT)

HSP 1 Score: 72.0 bits (175), Expect = 5.000e-13
Identity = 35/77 (45.45%), Postives = 50/77 (64.94%), Query Frame = 0
Query:   10 LAAKHDFELEGMDVDVAYFNAPVEEELFVKLPPAFSPFSRDITF-VRRLHKSLYGLKQSGRNWSNTLDDFLVGIGLV 85
            LA +++  +  MDV  AY NAP++ EL+V+ P  F+   +D  + V +L KSLYGLKQSGRNW++ L   LV  G +
Sbjct:   80 LAMQYNLTIHQMDVKTAYLNAPIDCELYVEQPEGFTMTGKDGEYLVYKLRKSLYGLKQSGRNWNSVLHSHLVSEGFI 156          
BLAST of mRNA_H-paniculata_contig19165.4811.1 vs. uniprot
Match: W7TCB8_9STRA (Gag-pol polyprotein n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TCB8_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 5.160e-13
Identity = 39/82 (47.56%), Postives = 51/82 (62.20%), Query Frame = 0
Query:    7 VFSLAAKHDFELEGMDVDVAYFNAPVEEELFVKLPPAFSPF-SRDITFVRRLHKSLYGLKQSGRNWSNTLDDFLVGIGLVFH 87
            V +LA   D EL+ MDV+ AY  + +EE+++VK PP +  + S     V RL KSLYGLKQSGRNW   +D +  G G  FH
Sbjct:   70 VLALACILDLELDNMDVEPAYLQSDLEEKVYVKQPPGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYG--FH 149          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19165.4811.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7D9HG25_PARCT9.020e-1546.75Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A0S7FQF2_9TELE2.410e-1449.35POLX (Fragment) n=1 Tax=Poeciliopsis prolifica Tax... [more]
W7TJI6_9STRA3.570e-1446.05Retrotransposon ty1-copia subclass n=2 Tax=Nannoch... [more]
A0A0S7FUV3_9TELE1.020e-1349.35COPIA n=2 Tax=Poeciliopsis prolifica TaxID=188132 ... [more]
W7T0D1_9STRA1.180e-1347.56Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]
W7TJ26_9STRA1.610e-1344.71Gag-pol polyprotein n=2 Tax=Nannochloropsis gadita... [more]
A0A6S7HLY2_PARCT2.160e-1342.86Reverse transcriptase Ty1/copia-type domain-contai... [more]
W7T9Y7_9STRA4.360e-1343.90Retrotransposon ty1-copia subclass n=1 Tax=Nannoch... [more]
A0A7D9L0S1_PARCT5.000e-1345.45Retrovirus-related Pol poly from transposon TNT 1-... [more]
W7TCB8_9STRA5.160e-1347.56Gag-pol polyprotein n=3 Tax=Nannochloropsis gadita... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 8..83
e-value: 1.4E-15
score: 57.6
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 97..116
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 78..96
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..77

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19165contigH-paniculata_contig19165:2504..2854 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19165.4811.1mRNA_H-paniculata_contig19165.4811.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig19165 1018..3789 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig19165.4811.1 ID=prot_H-paniculata_contig19165.4811.1|Name=mRNA_H-paniculata_contig19165.4811.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=117bp
MSIFCTVFSLAAKHDFELEGMDVDVAYFNAPVEEELFVKLPPAFSPFSRD
ITFVRRLHKSLYGLKQSGRNWSNTLDDFLVGIGLVFHYRPMLVLLSRRRR
RDRNSRCRLCRRPGHR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2