mRNA_H-paniculata_contig19165.4811.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19165.4811.1
Unique NamemRNA_H-paniculata_contig19165.4811.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig19165.4811.1 vs. uniprot
Match: A0A151QYN6_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151QYN6_CAJCA)

HSP 1 Score: 166 bits (420), Expect = 1.760e-40
Identity = 91/249 (36.55%), Postives = 139/249 (55.82%), Query Frame = 2
Query:  137 RFAIIFADDYSRMRKV*TLKHKSEALWTLKQFERDIAKAKGLQIQCLQSDQRGELRGEAFRQFCAGNGIKQEFSAAYTPQQNGVVDRSWRSVFEMTRSKMITANMGRRYWAKAARAAVYCLNRAPTRPHNGGTPNEVWHNTTPKLKHLRVFGCMAYVMFQSQQRQKLDDQAWVGVFLGYNEDSPSYRINDPETIASS*AGT*DLTKRIS*PVIAD----SWSTTRPET*KACFSTVGHTSRDIAPEPNE 871
            R+ I F DD+SR   V  L  K+EA  T K+F   + K     I CL++D+ GE     F +FC  NGI+++ +AAYTPQQNGV +R  R++ +M R+ +  A + + +W +A R  VY LNR PT      TP E W +  P ++HL+VFGC+AYV      R+KLDD++   VFLG +E+S +YR+ +P T          +++ +   + A+    +W+ T   T  AC +     ++  A +P E
Sbjct:  175 RYFITFIDDFSRKTWVFFLCEKAEAFETFKRFRLMVEKESNCVISCLRTDRGGEFNSNDFNEFCTMNGIRRQLTAAYTPQQNGVAERKNRTIMDMVRTMLCEAKIHKSFWPEAVRWTVYLLNRCPTVAVKDLTPEEAWSSIKPSVRHLKVFGCIAYVHIADANRKKLDDKSSKCVFLGVSEESKAYRLYNPSTKKIV------ISRDV---IFAEDEVWNWNNTEKTTPIACETEENEAAKTPAEQPIE 414          
BLAST of mRNA_H-paniculata_contig19165.4811.1 vs. uniprot
Match: UPI001CC6DD69 (uncharacterized protein LOC110630572 n=1 Tax=Manihot esculenta TaxID=3983 RepID=UPI001CC6DD69)

HSP 1 Score: 169 bits (429), Expect = 8.510e-40
Identity = 83/198 (41.92%), Postives = 124/198 (62.63%), Query Frame = 2
Query:  116 TKAFEGLRFAIIFADDYSRMRKV*TLKHKSEALWTLKQFERDIAKAKGLQIQCLQSDQRGELRGEAFRQFCAGNGIKQEFSAAYTPQQNGVVDRSWRSVFEMTRSKMITANMGRRYWAKAARAAVYCLNRAPTRPHNGGTPNEVWHNTTPKLKHLRVFGCMAYVMFQSQQRQKLDDQAWVGVFLGYNEDSPSYRINDP 709
            T +  G R+ ++F DDYSRM  V  LK+KSE L T K+F   I K  G  ++ L++D+ GE     F + C   GI+++ +A+YTPQQNGV +R  RS+ EM +S +   N+ + +WA+A   A Y LNR+ T   +  TP E W+   PK+KH ++FGC+AYV+  SQ+R KLD+ +   +F+GY+ ++  YR  DP
Sbjct:  624 TSSLNGSRYFVVFVDDYSRMTWVFFLKNKSEVLPTFKKFRSLIEKQSGNAVKILRTDRGGEFVSAEFDKLCEDFGIQRQLTASYTPQQNGVAERKIRSLVEMAKSMLKAKNLPKSFWAEAIHTAAYILNRSSTSALSNQTPFEAWNGWKPKVKHFKIFGCVAYVLVPSQKRGKLDENSVRCIFVGYSMETKGYRFYDP 821          
BLAST of mRNA_H-paniculata_contig19165.4811.1 vs. uniprot
Match: A0A392LYY6_9FABA (Copia-type polyprotein n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392LYY6_9FABA)

HSP 1 Score: 165 bits (417), Expect = 2.240e-38
Identity = 79/193 (40.93%), Postives = 120/193 (62.18%), Query Frame = 2
Query:  137 RFAIIFADDYSRMRKV*TLKHKSEALWTLKQFERDIAKAKGLQIQCLQSDQRGELRGEAFRQFCAGNGIKQEFSAAYTPQQNGVVDRSWRSVFEMTRSKMITANMGRRYWAKAARAAVYCLNRAPTRPHNGGTPNEVWHNTTPKLKHLRVFGCMAYVMFQSQQRQKLDDQAWVGVFLGYNEDSPSYRINDPET 715
            R+ + F DD+SR   V  LK+KS AL   K+F   + K  G  I CL++D+ GE     F+++C  NGIK++ + AYTPQQNG+ +R  R++ +M RS +   ++ + +W +A   A+Y LNR+P       TP E W ++ P +KHLRVFGC+AY       R+KLDD++   +FLG +E+S +YR+ +P T
Sbjct:  409 RYVLTFIDDFSRKTWVYFLKNKSSALNYFKKFRSMVEKESGSAICCLRTDRGGEFNSSEFKEYCEENGIKRQLTTAYTPQQNGIAERKNRTIMDMVRSMISGKDVPKSFWPEAVNWAIYILNRSPAAALPNMTPEEAWSSSKPTVKHLRVFGCIAYTHVPDSHRKKLDDKSVKCIFLGISEESKAYRLYNPTT 601          
BLAST of mRNA_H-paniculata_contig19165.4811.1 vs. uniprot
Match: A0A2Z6P2A8_TRISU (Uncharacterized protein n=2 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6P2A8_TRISU)

HSP 1 Score: 164 bits (414), Expect = 5.520e-38
Identity = 79/193 (40.93%), Postives = 121/193 (62.69%), Query Frame = 2
Query:  137 RFAIIFADDYSRMRKV*TLKHKSEALWTLKQFERDIAKAKGLQIQCLQSDQRGELRGEAFRQFCAGNGIKQEFSAAYTPQQNGVVDRSWRSVFEMTRSKMITANMGRRYWAKAARAAVYCLNRAPTRPHNGGTPNEVWHNTTPKLKHLRVFGCMAYVMFQSQQRQKLDDQAWVGVFLGYNEDSPSYRINDPET 715
            R+ + F DDYSR   V  L +KS+A    K+F+  + K     I CL++D+ GE   + F++FC  NGIK++ +AAYTPQQNG+ +R  R++ EM R  +   ++ + +W +A   A+Y LNR+PT      TP EVW +T P +KH ++FGC+AY      QR+KLDD++   VF G +E++ +YR+ +P T
Sbjct:  504 RYVLTFIDDYSRKIWVYYLSNKSDAFECFKKFKCMVEKETSETICCLRTDRGGEFNSDEFKEFCEVNGIKRQLTAAYTPQQNGIAERKNRTIMEMIRCMLAGKSVPKAFWPEAVNWAIYVLNRSPTAAIKDMTPEEVWSSTKPSVKHFKIFGCIAYAHAPDAQRKKLDDKSVKCVFFGISEETKAYRLYNPIT 696          
BLAST of mRNA_H-paniculata_contig19165.4811.1 vs. uniprot
Match: A0A2Z7BCE9_9LAMI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7BCE9_9LAMI)

HSP 1 Score: 161 bits (408), Expect = 6.890e-38
Identity = 76/200 (38.00%), Postives = 122/200 (61.00%), Query Frame = 2
Query:  116 TKAFEGLRFAIIFADDYSRMRKV*TLKHKSEALWTLKQFERDIAKAKGLQIQCLQSDQRGELRGEAFRQFCAGNGIKQEFSAAYTPQQNGVVDRSWRSVFEMTRSKMITANMGRRYWAKAARAAVYCLNRAPTRPHNGGTPNEVWHNTTPKLKHLRVFGCMAYVMFQSQQRQKLDDQAWVGVFLGYNEDSPSYRINDPET 715
            T+   G ++ ++F DDYSRM  V  LK KSEA     +F+  + K KG  ++ L++D+ GE     F Q+C  +GI +E +A YTP+QNGV +R  R++ EM RS + +  +   +WA+A   AVY +N +PT+     TP E W    P ++HL++FGC+ YV+  + +R KL++++   +F+GY   S +YR+ +P T
Sbjct:  362 TETLGGSKYFLLFVDDYSRMSWVYFLKFKSEAFGQFFKFKALVEKQKGSNLKILRTDRGGEFTSMEFNQYCEKHGIHKELTAPYTPEQNGVAERKNRTIVEMARSMLKSKGLPYNFWAEAVTTAVYLINLSPTKAVMNKTPYEAWSGKRPSVEHLKIFGCIVYVLINANERHKLEEKSIKCIFIGYCSQSKAYRVYNPAT 561          
BLAST of mRNA_H-paniculata_contig19165.4811.1 vs. uniprot
Match: A0A2N9FS65_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9FS65_FAGSY)

HSP 1 Score: 162 bits (410), Expect = 1.530e-37
Identity = 129/417 (30.94%), Postives = 185/417 (44.36%), Query Frame = 1
Query:  901 VEEPKSTAEALKSPEAGKWRAAVEEEWRALVKHGMWDSEDPGRLLVGRKAICTKRIFKPTLK*GGSVARYKARLVAQGLSRVEGEAFFETGASVARMSIFCTVFSLAAKHDFELEGMDVDVAYFNAPVEEELFVKLPPAFSPFSRDITFVRRLHKSLYGLKQSGRNWSNTLDDFLVGIGLVFHYRPMLVLLSRRRRRDRNSRCRLCRRPGHR*TS*ESRRVQAQHKSAV*DERLGLPLARVENRSTTRPPRWYH--INIPRHGRTTHVC-----LDRN*T*YSIRGTTS---------------STFYGGPVSGRYQYMQAHFRYLTSVPDLGIMFGGKSNGHDLE--GFVDADWAEDVGYRKSTTGYIFKLHGGAISWCSSKQQ------LEAEYVDAGEAGKETIYLRDLLGSIG 2061
            V+EP S +EAL SP+  +W  A++EE  ++ K+ +W+  D   L  GRK I  K + K   K  GS+ RYKARLVA+G ++ EG  + +T + V R +    + S+ AK D EL  MDV  A+ N  ++EE+++  P  F     +   V RL +S+YGLKQS R W     D +   G         V L R +R                              S   D+ L   LA  +  S     +W      +   G    V       DR+    S+   T                S +   P    ++ ++   RYL    D  + +    +G DL   G+ DADWA D   RKST+GY F L GGA+SWCS KQ       +E+EYV    A +E ++LR  L  +G
Sbjct:  681 VDEPASFSEALHSPDRDEWMTAMQEEMSSMDKNNVWELVD---LPPGRKTIGNKWVLKVKRKADGSIDRYKARLVAKGYTQREGIDYEDTFSPVVRFASIRLILSIVAKQDLELFQMDVKTAFLNGELDEEIYMAQPAGFEAKGHERK-VCRLKRSIYGLKQSSRQWYLRFHDSITSFGFEMIEEDHCVYLKRSKR-------------------------SILILSLYVDDIL---LAGNDMDSIVTTKKWLSSTFEMKDMGEANFVLGVKITRDRSKKLLSLSQGTYIKKILEHICFAVGMVSRYQSNPGPAHWRAVKRILRYLRGTSDHALCY----HGGDLRLTGYSDADWASDKDERKSTSGYAFILGGGAVSWCSKKQSCIALSTMESEYVACSAAVQEAVWLRRFLQRLG 1061          
BLAST of mRNA_H-paniculata_contig19165.4811.1 vs. uniprot
Match: A0A8J4F5P8_9CHLO (Uncharacterized protein n=4 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4F5P8_9CHLO)

HSP 1 Score: 162 bits (410), Expect = 1.860e-37
Identity = 139/452 (30.75%), Postives = 202/452 (44.69%), Query Frame = 1
Query:  892 TLSVEEPKSTAEALKSPEAGKWRAAVEEEWRALVKHGMWDSEDPGRLLVGRKAICTKRIFKPTLK*GGSVARYKARLVAQGLSRVEGEAFFETGASVARMSIFCTVFSLAAKHDFELEGMDVDVAYFNAPVEEELFVKLPPAFSPFSRDITFVRRLHKSLYGLKQSGRNWSNTLDDFLVGIGL--------------------VFHYRPMLVLLSRRRRRDRNSRCRL-----CRRPGHR*TS*ES--RRVQAQHKSAV*DERLGLPLARVENRSTTRPPRWYHINIPRHGRTTHVC-------LDRN*T*YS--------IRGTTS----------STFYGGPVSGRYQYMQAHFRYLTSVPDLGIMFGGKSNGHDLEGFVDADWAEDVGYRKSTTGYIFKLHGGAISWCSSKQ------QLEAEYVDAGEAGKETIYLRDLLGSIGFGCR 2073
            +  ++ P +  EA+ SP A +WRAA+EEE  +L   G W  E+        +A+ TK +F       G+V R+KARLV +G  + EG  F E  A V++ +      ++ A ++ EL  +DV  A+ N  +EEE+FVK PP F     ++  V RLHK+LYGL+Q+ R W   L D L+  G                     V  Y   +++ S   +    ++  L     CR  G          +R +A    ++   RL   L ++    + R        +P     TH+        LDR    YS        I G T           +     P    ++  +   RYL    D G+ FGG+     L GF DAD A  V  R+STTGY+F +HG A+SW S  Q       +EAEYV A EA KE ++LR LL  +G+  R
Sbjct:  888 STDIKVPTTYEEAMASPYADEWRAAMEEEIASLRSKGTWSLEEKP---PDARALGTKWVFSLKFDQNGAVERFKARLVVKGFMQREGIDFEEVFAPVSKHATLRAFLAMVAANNMELHQLDVKTAFLNGELEEEVFVKQPPGFEEGGPNV--VGRLHKALYGLRQASRAWYKKLHDHLMEQGYRVSEADPSLYVRERDGVTVYVLVYVDDVLIASTSLKAVIAAKAELMSQFECRDMGEATMFLGMLIKRDRAMGYLSLSQPRLIEELVQLYGMGSARSK-----PVPM-AEGTHLAQASLEERLDRERYPYSELIGSLLYISGCTRPDISQAVGVLTRHMAKPAKEHWKAAKEVVRYLLGTADFGLAFGGERAAEGLLGFCDADHAGCVDTRRSTTGYVFSVHGCAVSWASKLQWSVAVSTMEAEYVAASEATKEALWLRQLLTDMGYSVR 1328          
BLAST of mRNA_H-paniculata_contig19165.4811.1 vs. uniprot
Match: A0A2Z6LTJ1_TRISU (Integrase catalytic domain-containing protein n=2 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6LTJ1_TRISU)

HSP 1 Score: 161 bits (407), Expect = 1.880e-37
Identity = 83/200 (41.50%), Postives = 115/200 (57.50%), Query Frame = 2
Query:  116 TKAFEGLRFAIIFADDYSRMRKV*TLKHKSEALWTLKQFERDIAKAKGLQIQCLQSDQRGELRGEAFRQFCAGNGIKQEFSAAYTPQQNGVVDRSWRSVFEMTRSKMITANMGRRYWAKAARAAVYCLNRAPTRPHNGGTPNEVWHNTTPKLKHLRVFGCMAYVMFQSQQRQKLDDQAWVGVFLGYNEDSPSYRINDPET 715
            T +    R+ I+F DD+SRM  V  +K KSE     K+F+  + K  G  I+ L+SD+  E     F +FC   GI+Q+ + AY+PQQNG+ +R  R+V EM RS M    +   +WA+A   AVY LNR PT+     TP E W    P  KHLRVFG + Y+    Q+R KL+D+   G+FLGY+  S  YRI + +T
Sbjct:  482 TPSLNNSRYFILFIDDFSRMTWVYFIKEKSEVFGIFKKFKALVEKQSGKNIKMLRSDRGKEYNSHEFDKFCEDEGIEQQLTVAYSPQQNGMSERKNRTVMEMARSMMKDKGLPNTFWAEAVYTAVYILNRCPTKAVQDKTPIETWCGKKPSAKHLRVFGSICYIHVPKQKRHKLEDKTTKGIFLGYSTQSKGYRIYNLQT 681          
BLAST of mRNA_H-paniculata_contig19165.4811.1 vs. uniprot
Match: A0A3S3RF48_9ACAR (Retrovirus-related Pol polyprotein from transposon TNT 1-94-like protein (Fragment) n=1 Tax=Dinothrombium tinctorium TaxID=1965070 RepID=A0A3S3RF48_9ACAR)

HSP 1 Score: 157 bits (396), Expect = 2.800e-37
Identity = 81/200 (40.50%), Postives = 114/200 (57.00%), Query Frame = 2
Query:  116 TKAFEGLRFAIIFADDYSRMRKV*TLKHKSEALWTLKQFERDIAKAKGLQIQCLQSDQRGELRGEAFRQFCAGNGIKQEFSAAYTPQQNGVVDRSWRSVFEMTRSKMITANMGRRYWAKAARAAVYCLNRAPTRPHNGGTPNEVWHNTTPKLKHLRVFGCMAYVMFQSQQRQKLDDQAWVGVFLGYNEDSPSYRINDPET 715
            TK F G R+ + F DDYSR      L+HKSE      + E  +      +I+ L+SD+  E R + F  FC G GI Q+F+A+YTPQQNGV +R  R++ E  R  +  A +  +YW +A + AVY  NR+ T+     TP E W    P L +LRVFGC AY     ++RQKLD  +   +FLGY+E   +YR+ + +T
Sbjct:  189 TKTFSGKRYFLTFIDDYSRFTVCYLLEHKSEVYDKFVECEALVTNMTSNRIKMLRSDEGCEYRSKKFNAFCKGKGIIQQFTASYTPQQNGVAERMNRTIVEAARCMLQAAQLDNKYWDEAVQTAVYLQNRSSTKALTNITPYEAWFGKKPDLSNLRVFGCQAYAHILIEKRQKLDANSTKCIFLGYSESIKAYRLQEVKT 388          
BLAST of mRNA_H-paniculata_contig19165.4811.1 vs. uniprot
Match: A0A5H2XTJ8_PRUDU (Integrase catalytic domain-containing protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5H2XTJ8_PRUDU)

HSP 1 Score: 150 bits (380), Expect = 3.860e-37
Identity = 77/191 (40.31%), Postives = 114/191 (59.69%), Query Frame = 2
Query:  137 RFAIIFADDYSRMRKV*TLKHKSEALWTLKQFERDIAKAKGLQIQCLQSDQRGELRGEAFRQFCAGNGIKQEFSAAYTPQQNGVVDRSWRSVFEMTRSKMITANMGRRYWAKAARAAVYCLNRAPTRPHNGGTPNEVWHNTTPKLKHLRVFGCMAYVMFQSQQRQKLDDQAWVGVFLGYNEDSPSYRINDP 709
            R+ ++  DD++RM  V  L++KSEA +  K+F+       G ++QC++SD+ GE     F +FC  NGI+++ + AYTPQQNGVV+R  R+V EM +S +    M    W +A   AVY LNR PT+  N  TP E +    P + HL+VFG + YV   ++ R KL+ ++  GVF+GY      YR+ DP
Sbjct:   10 RYFMLIIDDFTRMIWVYFLRNKSEAFYCFKKFKSMTELQTGHKVQCIRSDRGGEFLSTDFLEFCEANGIQRQLTMAYTPQQNGVVERKNRTVIEMAKSMLHEKGMPYFLWTEAVHTAVYLLNRCPTKALNNITPFEAYSGRKPGIAHLKVFGSLCYVHVPTELRHKLEPKSTKGVFVGYATCEKGYRVFDP 200          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19165.4811.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A151QYN6_CAJCA1.760e-4036.55Retrovirus-related Pol polyprotein from transposon... [more]
UPI001CC6DD698.510e-4041.92uncharacterized protein LOC110630572 n=1 Tax=Manih... [more]
A0A392LYY6_9FABA2.240e-3840.93Copia-type polyprotein n=1 Tax=Trifolium medium Ta... [more]
A0A2Z6P2A8_TRISU5.520e-3840.93Uncharacterized protein n=2 Tax=Trifolium subterra... [more]
A0A2Z7BCE9_9LAMI6.890e-3838.00Retrovirus-related Pol polyprotein from transposon... [more]
A0A2N9FS65_FAGSY1.530e-3730.94Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A8J4F5P8_9CHLO1.860e-3730.75Uncharacterized protein n=4 Tax=Volvox africanus T... [more]
A0A2Z6LTJ1_TRISU1.880e-3741.50Integrase catalytic domain-containing protein n=2 ... [more]
A0A3S3RF48_9ACAR2.800e-3740.50Retrovirus-related Pol polyprotein from transposon... [more]
A0A5H2XTJ8_PRUDU3.860e-3740.31Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19165contigH-paniculata_contig19165:1018..3789 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score67.0
Seed ortholog evalue6.6e-09
Seed eggNOG ortholog34349.G7E3S6
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs2YC45@29000,38DPC@33154,3NUZ7@4751,3UY7N@5204,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPucciniomycotina
Best eggNOG OGNA|NA|NA
Exons3
Model size2264
Cds size351
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19165.4811.1prot_H-paniculata_contig19165.4811.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19165 2504..2854 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929465.3596985-UTR-H-paniculata_contig19165:1017..18931622929465.3596985-UTR-H-paniculata_contig19165:1017..1893Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19165 1018..1893 +
1691480873.3030012-UTR-H-paniculata_contig19165:1017..18931691480873.3030012-UTR-H-paniculata_contig19165:1017..1893Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19165 1018..1893 +
1622929465.377257-UTR-H-paniculata_contig19165:2191..25031622929465.377257-UTR-H-paniculata_contig19165:2191..2503Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19165 2192..2503 +
1691480873.3138623-UTR-H-paniculata_contig19165:2191..25031691480873.3138623-UTR-H-paniculata_contig19165:2191..2503Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19165 2192..2503 +
1622929465.408097-UTR-H-paniculata_contig19165:2854..29911622929465.408097-UTR-H-paniculata_contig19165:2854..2991Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19165 2855..2991 +
1691480873.332628-UTR-H-paniculata_contig19165:2854..29911691480873.332628-UTR-H-paniculata_contig19165:2854..2991Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19165 2855..2991 +
1622929465.4197361-UTR-H-paniculata_contig19165:3201..37891622929465.4197361-UTR-H-paniculata_contig19165:3201..3789Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19165 3202..3789 +
1691480873.3449554-UTR-H-paniculata_contig19165:3201..37891691480873.3449554-UTR-H-paniculata_contig19165:3201..3789Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19165 3202..3789 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929465.3926241-CDS-H-paniculata_contig19165:2503..28541622929465.3926241-CDS-H-paniculata_contig19165:2503..2854Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19165 2504..2854 +
1691480873.323111-CDS-H-paniculata_contig19165:2503..28541691480873.323111-CDS-H-paniculata_contig19165:2503..2854Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19165 2504..2854 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19165.4811.1

>prot_H-paniculata_contig19165.4811.1 ID=prot_H-paniculata_contig19165.4811.1|Name=mRNA_H-paniculata_contig19165.4811.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=117bp
MSIFCTVFSLAAKHDFELEGMDVDVAYFNAPVEEELFVKLPPAFSPFSRD
ITFVRRLHKSLYGLKQSGRNWSNTLDDFLVGIGLVFHYRPMLVLLSRRRR
RDRNSRCRLCRRPGHR*
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mRNA from alignment at H-paniculata_contig19165:1018..3789+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19165.4811.1 ID=mRNA_H-paniculata_contig19165.4811.1|Name=mRNA_H-paniculata_contig19165.4811.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2772bp|location=Sequence derived from alignment at H-paniculata_contig19165:1018..3789+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCTGTTCAGCGTGTGAACGGGGGAAGGCATCGAAGCAACCTGTAAAGAA GTTTCGGGAAGAGTATACAACGGAGCGACTAGAGCTAGTACATACTGACA TCACAGGACCGATAGACGAAAGCTTTCGAGGGACTCCGTTTCGCCATTAT CTTCGCGGACGATTACAGTCGAATGCGTAAGGTCTAGACCCTGAAACACA AATCAGAGGCATTATGGACTCTGAAACAGTTCGAGCGGGACATCGCGAAG GCAAAAGGGCTACAAATACAATGCCTTCAGTCAGATCAGAGAGGAGAGTT AAGAGGAGAAGCATTCCGACAATTTTGTGCGGGAAATGGCATCAAGCAAG AATTTTCTGCTGCCTACACGCCGCAGCAAAACGGTGTGGTGGACCGCAGC TGGCGTAGCGTTTTCGAGATGACCCGAAGTAAGATGATCACCGCCAACAT GGGTCGCAGGTATTGGGCGAAGGCGGCGCGCGCGGCTGTGTACTGCTTAA ATCGCGCTCCGACGCGACCGCACAACGGAGGAACGCCGAATGAGGTATGG CACAACACGACACCAAAGCTTAAACACCTTCGTGTCTTCGGCTGCATGGC GTACGTGATGTTCCAGTCGCAGCAGAGACAAAAACTTGATGACCAAGCGT GGGTTGGGGTGTTTCTGGGGTACAACGAGGACAGCCCGAGTTATCGCATA AATGACCCGGAAACAATAGCGTCCAGTTGAGCAGGAACGTGAGATTTGAC GAAGAGGATTTCGTAACCGGTCATCGCGGACAGCTGGAGCACGACGAGAC CCGAGACATGAAAGGCCTGTTTCAGCACCGTCGGTCACACCTCACGCGAT ATTGCGCCCGAGCCGAACGAGGAGATGTGACCAACACGGAAAACCCAACG TCAGCGTCGTCTAGCGCCAGCGCCAACCCGTACGGCGCCTTGAGCGATGA CGATAATCATGAAGACAATAATGACTCGGAGGTGAACGATGCTGAACCAG AAGCTGAAGACACATCGTCGGTGGAAACATGCGCAATCATATCTCGAGAG GAGACCAGGACAGAGTCAGGGACGGAGGAGCGGCGACCGCGAGATCGATC ACCAACACTGACACGGGCGAGAGCGAGGGAAAACTGCGAAGAGGGTGCAG GCGCTGCCGCGCGCGTGGCTAAAGTGGAAAACACCAGCAACCCTATCTGT GGAGGAGCCGAAATCTACGGCAGAAGCATTGAAGAGCCCAGAGGCAGGCA AATGGCGCGCGGCAGTGGAGGAGGAATGGAGGGCGTTGGTCAAACATGGG ATGTGGGATAGCGAGGACCCGGGGAGGTTACTGGTAGGGCGGAAGGCGAT CTGTACCAAACGAATTTTCAAGCCCACACTGAAGTAGGGCGGCAGCGTGG CACGTTACAAAGCGCGACTAGTAGCTCAAGGTTTATCACGCGTGGAGGGT GAAGCTTTCTTTGAAACCGGTGCCTCCGTAGCTCGCATGTCGATATTTTG TACTGTTTTCAGCCTGGCCGCCAAACATGATTTCGAACTAGAAGGCATGG ACGTAGATGTGGCATATTTCAATGCCCCCGTAGAAGAAGAACTGTTTGTT AAGCTACCGCCCGCGTTTTCCCCTTTCTCTCGAGATATAACGTTTGTGCG CCGCCTACATAAAAGCCTGTATGGCCTCAAGCAGAGCGGCCGAAACTGGA GTAACACTCTTGACGATTTTCTTGTTGGGATAGGACTAGTGTTCCACTAC CGACCTATGCTTGTACTTCTCTCGCGACGAAGGAGGAGAGACAGAAATTC CCGTTGCCGTCTATGTCGACGACCTGGTCATCGCTGAACATCGTGAGAAA GTAGACGAGTTCAAGCACAACATAAGTCGGCGGTTTAGGATGAAAGACTT GGGCTGCCTCTCGCGCGTGTTGAGAATAGAAGTACGACGAGACCGCCCCG ATGGTACCATATCAATATCCCAAGGTTGCTACATCTGCGAGGTACTGAAA AGATACAGTTTTGACGGGTGTCGCGGCATGCCCACCCCTGTAGAGGGAAA AGTGAAGATTTTGGAACCCGAGTCGGCCGACAAGCCCCCCGAACCGAAAC CACTTGGGGCTGTACTGTCGGACAAAAGCGCAGGAATACAAGAAAACAGC AGTGGGAGAAATGGCATTTCAATTGAATACAGAGGCATGGTAGGACCACT CATGTATGCCTCGATAGGAACTAGACCTGATATAGCATACGCGGTACAAC AAGCAGCACGTTTTATGGAGGACCCGTGTCGGGAAGATATCAGTACATGC AAGCGCATTTTCGTTATCTCACTAGTGTTCCTGACCTTGGCATTATGTTC GGCGGCAAGAGTAATGGTCACGATCTGGAAGGATTCGTTGATGCCGATTG GGCGGAAGATGTCGGGTACCGAAAGTCCACAACAGGATACATTTTCAAGC TGCACGGTGGTGCGATAAGTTGGTGCTCTAGCAAGCAACAGTTAGAGGCA GAGTACGTTGATGCAGGAGAAGCGGGAAAGGAGACGATATATCTTAGGGA TTTACTAGGATCGATAGGTTTCGGATGCAGGAGGATCACAACATATTAGA GGACGAGTCAGCTATCAATCTCAGTATGGGATCTGGCGCACACTGCAGGA CAAAGCACATCGGAGTGAACTGGCACGGAATTCGAGAGTGGCTTCGGGAA GGAATTTTGGCGCTGAAATACGTGCAGACCGGCGACCAACTTGCTGACAG TCTAACGAAAGCACTGAGCACA
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Coding sequence (CDS) from alignment at H-paniculata_contig19165:1018..3789+

>mRNA_H-paniculata_contig19165.4811.1 ID=mRNA_H-paniculata_contig19165.4811.1|Name=mRNA_H-paniculata_contig19165.4811.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at H-paniculata_contig19165:1018..3789+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGATATTTTGTACTGTTTTCAGCCTGGCCGCCAAACATGATTTCGA
ACTAGAAGGCATGGACGTAGATGTGGCATATTTCAATGCCCCCGTAGAAG
AAGAACTGTTTGTTAAGCTACCGCCCGCGTTTTCCCCTTTCTCTCGAGAT
ATAACGTTTGTGCGCCGCCTACATAAAAGCCTGTATGGCCTCAAGCAGAG
CGGCCGAAACTGGAGTAACACTCTTGACGATTTTCTTGTTGGGATAGGAC
TAGTGTTCCACTACCGACCTATGCTTGTACTTCTCTCGCGACGAAGGAGG
AGAGACAGAAATTCCCGTTGCCGTCTATGTCGACGACCTGGTCATCGCTG
AATGTCGATATTTTGTACTGTTTTCAGCCTGGCCGCCAAACATGATTTCG
AACTAGAAGGCATGGACGTAGATGTGGCATATTTCAATGCCCCCGTAGAA
GAAGAACTGTTTGTTAAGCTACCGCCCGCGTTTTCCCCTTTCTCTCGAGA
TATAACGTTTGTGCGCCGCCTACATAAAAGCCTGTATGGCCTCAAGCAGA
GCGGCCGAAACTGGAGTAACACTCTTGACGATTTTCTTGTTGGGATAGGA
CTAGTGTTCCACTACCGACCTATGCTTGTACTTCTCTCGCGACGAAGGAG
GAGAGACAGAAATTCCCGTTGCCGTCTATGTCGACGACCTGGTCATCGCT
GA
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