mRNA_H-paniculata_contig19165.4811.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig19165.4811.1 vs. uniprot
Match: A0A151QYN6_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151QYN6_CAJCA) HSP 1 Score: 166 bits (420), Expect = 1.760e-40 Identity = 91/249 (36.55%), Postives = 139/249 (55.82%), Query Frame = 2
Query: 137 RFAIIFADDYSRMRKV*TLKHKSEALWTLKQFERDIAKAKGLQIQCLQSDQRGELRGEAFRQFCAGNGIKQEFSAAYTPQQNGVVDRSWRSVFEMTRSKMITANMGRRYWAKAARAAVYCLNRAPTRPHNGGTPNEVWHNTTPKLKHLRVFGCMAYVMFQSQQRQKLDDQAWVGVFLGYNEDSPSYRINDPETIASS*AGT*DLTKRIS*PVIAD----SWSTTRPET*KACFSTVGHTSRDIAPEPNE 871
R+ I F DD+SR V L K+EA T K+F + K I CL++D+ GE F +FC NGI+++ +AAYTPQQNGV +R R++ +M R+ + A + + +W +A R VY LNR PT TP E W + P ++HL+VFGC+AYV R+KLDD++ VFLG +E+S +YR+ +P T +++ + + A+ +W+ T T AC + ++ A +P E
Sbjct: 175 RYFITFIDDFSRKTWVFFLCEKAEAFETFKRFRLMVEKESNCVISCLRTDRGGEFNSNDFNEFCTMNGIRRQLTAAYTPQQNGVAERKNRTIMDMVRTMLCEAKIHKSFWPEAVRWTVYLLNRCPTVAVKDLTPEEAWSSIKPSVRHLKVFGCIAYVHIADANRKKLDDKSSKCVFLGVSEESKAYRLYNPSTKKIV------ISRDV---IFAEDEVWNWNNTEKTTPIACETEENEAAKTPAEQPIE 414
BLAST of mRNA_H-paniculata_contig19165.4811.1 vs. uniprot
Match: UPI001CC6DD69 (uncharacterized protein LOC110630572 n=1 Tax=Manihot esculenta TaxID=3983 RepID=UPI001CC6DD69) HSP 1 Score: 169 bits (429), Expect = 8.510e-40 Identity = 83/198 (41.92%), Postives = 124/198 (62.63%), Query Frame = 2
Query: 116 TKAFEGLRFAIIFADDYSRMRKV*TLKHKSEALWTLKQFERDIAKAKGLQIQCLQSDQRGELRGEAFRQFCAGNGIKQEFSAAYTPQQNGVVDRSWRSVFEMTRSKMITANMGRRYWAKAARAAVYCLNRAPTRPHNGGTPNEVWHNTTPKLKHLRVFGCMAYVMFQSQQRQKLDDQAWVGVFLGYNEDSPSYRINDP 709
T + G R+ ++F DDYSRM V LK+KSE L T K+F I K G ++ L++D+ GE F + C GI+++ +A+YTPQQNGV +R RS+ EM +S + N+ + +WA+A A Y LNR+ T + TP E W+ PK+KH ++FGC+AYV+ SQ+R KLD+ + +F+GY+ ++ YR DP
Sbjct: 624 TSSLNGSRYFVVFVDDYSRMTWVFFLKNKSEVLPTFKKFRSLIEKQSGNAVKILRTDRGGEFVSAEFDKLCEDFGIQRQLTASYTPQQNGVAERKIRSLVEMAKSMLKAKNLPKSFWAEAIHTAAYILNRSSTSALSNQTPFEAWNGWKPKVKHFKIFGCVAYVLVPSQKRGKLDENSVRCIFVGYSMETKGYRFYDP 821
BLAST of mRNA_H-paniculata_contig19165.4811.1 vs. uniprot
Match: A0A392LYY6_9FABA (Copia-type polyprotein n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392LYY6_9FABA) HSP 1 Score: 165 bits (417), Expect = 2.240e-38 Identity = 79/193 (40.93%), Postives = 120/193 (62.18%), Query Frame = 2
Query: 137 RFAIIFADDYSRMRKV*TLKHKSEALWTLKQFERDIAKAKGLQIQCLQSDQRGELRGEAFRQFCAGNGIKQEFSAAYTPQQNGVVDRSWRSVFEMTRSKMITANMGRRYWAKAARAAVYCLNRAPTRPHNGGTPNEVWHNTTPKLKHLRVFGCMAYVMFQSQQRQKLDDQAWVGVFLGYNEDSPSYRINDPET 715
R+ + F DD+SR V LK+KS AL K+F + K G I CL++D+ GE F+++C NGIK++ + AYTPQQNG+ +R R++ +M RS + ++ + +W +A A+Y LNR+P TP E W ++ P +KHLRVFGC+AY R+KLDD++ +FLG +E+S +YR+ +P T
Sbjct: 409 RYVLTFIDDFSRKTWVYFLKNKSSALNYFKKFRSMVEKESGSAICCLRTDRGGEFNSSEFKEYCEENGIKRQLTTAYTPQQNGIAERKNRTIMDMVRSMISGKDVPKSFWPEAVNWAIYILNRSPAAALPNMTPEEAWSSSKPTVKHLRVFGCIAYTHVPDSHRKKLDDKSVKCIFLGISEESKAYRLYNPTT 601
BLAST of mRNA_H-paniculata_contig19165.4811.1 vs. uniprot
Match: A0A2Z6P2A8_TRISU (Uncharacterized protein n=2 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6P2A8_TRISU) HSP 1 Score: 164 bits (414), Expect = 5.520e-38 Identity = 79/193 (40.93%), Postives = 121/193 (62.69%), Query Frame = 2
Query: 137 RFAIIFADDYSRMRKV*TLKHKSEALWTLKQFERDIAKAKGLQIQCLQSDQRGELRGEAFRQFCAGNGIKQEFSAAYTPQQNGVVDRSWRSVFEMTRSKMITANMGRRYWAKAARAAVYCLNRAPTRPHNGGTPNEVWHNTTPKLKHLRVFGCMAYVMFQSQQRQKLDDQAWVGVFLGYNEDSPSYRINDPET 715
R+ + F DDYSR V L +KS+A K+F+ + K I CL++D+ GE + F++FC NGIK++ +AAYTPQQNG+ +R R++ EM R + ++ + +W +A A+Y LNR+PT TP EVW +T P +KH ++FGC+AY QR+KLDD++ VF G +E++ +YR+ +P T
Sbjct: 504 RYVLTFIDDYSRKIWVYYLSNKSDAFECFKKFKCMVEKETSETICCLRTDRGGEFNSDEFKEFCEVNGIKRQLTAAYTPQQNGIAERKNRTIMEMIRCMLAGKSVPKAFWPEAVNWAIYVLNRSPTAAIKDMTPEEVWSSTKPSVKHFKIFGCIAYAHAPDAQRKKLDDKSVKCVFFGISEETKAYRLYNPIT 696
BLAST of mRNA_H-paniculata_contig19165.4811.1 vs. uniprot
Match: A0A2Z7BCE9_9LAMI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7BCE9_9LAMI) HSP 1 Score: 161 bits (408), Expect = 6.890e-38 Identity = 76/200 (38.00%), Postives = 122/200 (61.00%), Query Frame = 2
Query: 116 TKAFEGLRFAIIFADDYSRMRKV*TLKHKSEALWTLKQFERDIAKAKGLQIQCLQSDQRGELRGEAFRQFCAGNGIKQEFSAAYTPQQNGVVDRSWRSVFEMTRSKMITANMGRRYWAKAARAAVYCLNRAPTRPHNGGTPNEVWHNTTPKLKHLRVFGCMAYVMFQSQQRQKLDDQAWVGVFLGYNEDSPSYRINDPET 715
T+ G ++ ++F DDYSRM V LK KSEA +F+ + K KG ++ L++D+ GE F Q+C +GI +E +A YTP+QNGV +R R++ EM RS + + + +WA+A AVY +N +PT+ TP E W P ++HL++FGC+ YV+ + +R KL++++ +F+GY S +YR+ +P T
Sbjct: 362 TETLGGSKYFLLFVDDYSRMSWVYFLKFKSEAFGQFFKFKALVEKQKGSNLKILRTDRGGEFTSMEFNQYCEKHGIHKELTAPYTPEQNGVAERKNRTIVEMARSMLKSKGLPYNFWAEAVTTAVYLINLSPTKAVMNKTPYEAWSGKRPSVEHLKIFGCIVYVLINANERHKLEEKSIKCIFIGYCSQSKAYRVYNPAT 561
BLAST of mRNA_H-paniculata_contig19165.4811.1 vs. uniprot
Match: A0A2N9FS65_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9FS65_FAGSY) HSP 1 Score: 162 bits (410), Expect = 1.530e-37 Identity = 129/417 (30.94%), Postives = 185/417 (44.36%), Query Frame = 1
Query: 901 VEEPKSTAEALKSPEAGKWRAAVEEEWRALVKHGMWDSEDPGRLLVGRKAICTKRIFKPTLK*GGSVARYKARLVAQGLSRVEGEAFFETGASVARMSIFCTVFSLAAKHDFELEGMDVDVAYFNAPVEEELFVKLPPAFSPFSRDITFVRRLHKSLYGLKQSGRNWSNTLDDFLVGIGLVFHYRPMLVLLSRRRRRDRNSRCRLCRRPGHR*TS*ESRRVQAQHKSAV*DERLGLPLARVENRSTTRPPRWYH--INIPRHGRTTHVC-----LDRN*T*YSIRGTTS---------------STFYGGPVSGRYQYMQAHFRYLTSVPDLGIMFGGKSNGHDLE--GFVDADWAEDVGYRKSTTGYIFKLHGGAISWCSSKQQ------LEAEYVDAGEAGKETIYLRDLLGSIG 2061
V+EP S +EAL SP+ +W A++EE ++ K+ +W+ D L GRK I K + K K GS+ RYKARLVA+G ++ EG + +T + V R + + S+ AK D EL MDV A+ N ++EE+++ P F + V RL +S+YGLKQS R W D + G V L R +R S D+ L LA + S +W + G V DR+ S+ T S + P ++ ++ RYL D + + +G DL G+ DADWA D RKST+GY F L GGA+SWCS KQ +E+EYV A +E ++LR L +G
Sbjct: 681 VDEPASFSEALHSPDRDEWMTAMQEEMSSMDKNNVWELVD---LPPGRKTIGNKWVLKVKRKADGSIDRYKARLVAKGYTQREGIDYEDTFSPVVRFASIRLILSIVAKQDLELFQMDVKTAFLNGELDEEIYMAQPAGFEAKGHERK-VCRLKRSIYGLKQSSRQWYLRFHDSITSFGFEMIEEDHCVYLKRSKR-------------------------SILILSLYVDDIL---LAGNDMDSIVTTKKWLSSTFEMKDMGEANFVLGVKITRDRSKKLLSLSQGTYIKKILEHICFAVGMVSRYQSNPGPAHWRAVKRILRYLRGTSDHALCY----HGGDLRLTGYSDADWASDKDERKSTSGYAFILGGGAVSWCSKKQSCIALSTMESEYVACSAAVQEAVWLRRFLQRLG 1061
BLAST of mRNA_H-paniculata_contig19165.4811.1 vs. uniprot
Match: A0A8J4F5P8_9CHLO (Uncharacterized protein n=4 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4F5P8_9CHLO) HSP 1 Score: 162 bits (410), Expect = 1.860e-37 Identity = 139/452 (30.75%), Postives = 202/452 (44.69%), Query Frame = 1
Query: 892 TLSVEEPKSTAEALKSPEAGKWRAAVEEEWRALVKHGMWDSEDPGRLLVGRKAICTKRIFKPTLK*GGSVARYKARLVAQGLSRVEGEAFFETGASVARMSIFCTVFSLAAKHDFELEGMDVDVAYFNAPVEEELFVKLPPAFSPFSRDITFVRRLHKSLYGLKQSGRNWSNTLDDFLVGIGL--------------------VFHYRPMLVLLSRRRRRDRNSRCRL-----CRRPGHR*TS*ES--RRVQAQHKSAV*DERLGLPLARVENRSTTRPPRWYHINIPRHGRTTHVC-------LDRN*T*YS--------IRGTTS----------STFYGGPVSGRYQYMQAHFRYLTSVPDLGIMFGGKSNGHDLEGFVDADWAEDVGYRKSTTGYIFKLHGGAISWCSSKQ------QLEAEYVDAGEAGKETIYLRDLLGSIGFGCR 2073
+ ++ P + EA+ SP A +WRAA+EEE +L G W E+ +A+ TK +F G+V R+KARLV +G + EG F E A V++ + ++ A ++ EL +DV A+ N +EEE+FVK PP F ++ V RLHK+LYGL+Q+ R W L D L+ G V Y +++ S + ++ L CR G +R +A ++ RL L ++ + R +P TH+ LDR YS I G T + P ++ + RYL D G+ FGG+ L GF DAD A V R+STTGY+F +HG A+SW S Q +EAEYV A EA KE ++LR LL +G+ R
Sbjct: 888 STDIKVPTTYEEAMASPYADEWRAAMEEEIASLRSKGTWSLEEKP---PDARALGTKWVFSLKFDQNGAVERFKARLVVKGFMQREGIDFEEVFAPVSKHATLRAFLAMVAANNMELHQLDVKTAFLNGELEEEVFVKQPPGFEEGGPNV--VGRLHKALYGLRQASRAWYKKLHDHLMEQGYRVSEADPSLYVRERDGVTVYVLVYVDDVLIASTSLKAVIAAKAELMSQFECRDMGEATMFLGMLIKRDRAMGYLSLSQPRLIEELVQLYGMGSARSK-----PVPM-AEGTHLAQASLEERLDRERYPYSELIGSLLYISGCTRPDISQAVGVLTRHMAKPAKEHWKAAKEVVRYLLGTADFGLAFGGERAAEGLLGFCDADHAGCVDTRRSTTGYVFSVHGCAVSWASKLQWSVAVSTMEAEYVAASEATKEALWLRQLLTDMGYSVR 1328
BLAST of mRNA_H-paniculata_contig19165.4811.1 vs. uniprot
Match: A0A2Z6LTJ1_TRISU (Integrase catalytic domain-containing protein n=2 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6LTJ1_TRISU) HSP 1 Score: 161 bits (407), Expect = 1.880e-37 Identity = 83/200 (41.50%), Postives = 115/200 (57.50%), Query Frame = 2
Query: 116 TKAFEGLRFAIIFADDYSRMRKV*TLKHKSEALWTLKQFERDIAKAKGLQIQCLQSDQRGELRGEAFRQFCAGNGIKQEFSAAYTPQQNGVVDRSWRSVFEMTRSKMITANMGRRYWAKAARAAVYCLNRAPTRPHNGGTPNEVWHNTTPKLKHLRVFGCMAYVMFQSQQRQKLDDQAWVGVFLGYNEDSPSYRINDPET 715
T + R+ I+F DD+SRM V +K KSE K+F+ + K G I+ L+SD+ E F +FC GI+Q+ + AY+PQQNG+ +R R+V EM RS M + +WA+A AVY LNR PT+ TP E W P KHLRVFG + Y+ Q+R KL+D+ G+FLGY+ S YRI + +T
Sbjct: 482 TPSLNNSRYFILFIDDFSRMTWVYFIKEKSEVFGIFKKFKALVEKQSGKNIKMLRSDRGKEYNSHEFDKFCEDEGIEQQLTVAYSPQQNGMSERKNRTVMEMARSMMKDKGLPNTFWAEAVYTAVYILNRCPTKAVQDKTPIETWCGKKPSAKHLRVFGSICYIHVPKQKRHKLEDKTTKGIFLGYSTQSKGYRIYNLQT 681
BLAST of mRNA_H-paniculata_contig19165.4811.1 vs. uniprot
Match: A0A3S3RF48_9ACAR (Retrovirus-related Pol polyprotein from transposon TNT 1-94-like protein (Fragment) n=1 Tax=Dinothrombium tinctorium TaxID=1965070 RepID=A0A3S3RF48_9ACAR) HSP 1 Score: 157 bits (396), Expect = 2.800e-37 Identity = 81/200 (40.50%), Postives = 114/200 (57.00%), Query Frame = 2
Query: 116 TKAFEGLRFAIIFADDYSRMRKV*TLKHKSEALWTLKQFERDIAKAKGLQIQCLQSDQRGELRGEAFRQFCAGNGIKQEFSAAYTPQQNGVVDRSWRSVFEMTRSKMITANMGRRYWAKAARAAVYCLNRAPTRPHNGGTPNEVWHNTTPKLKHLRVFGCMAYVMFQSQQRQKLDDQAWVGVFLGYNEDSPSYRINDPET 715
TK F G R+ + F DDYSR L+HKSE + E + +I+ L+SD+ E R + F FC G GI Q+F+A+YTPQQNGV +R R++ E R + A + +YW +A + AVY NR+ T+ TP E W P L +LRVFGC AY ++RQKLD + +FLGY+E +YR+ + +T
Sbjct: 189 TKTFSGKRYFLTFIDDYSRFTVCYLLEHKSEVYDKFVECEALVTNMTSNRIKMLRSDEGCEYRSKKFNAFCKGKGIIQQFTASYTPQQNGVAERMNRTIVEAARCMLQAAQLDNKYWDEAVQTAVYLQNRSSTKALTNITPYEAWFGKKPDLSNLRVFGCQAYAHILIEKRQKLDANSTKCIFLGYSESIKAYRLQEVKT 388
BLAST of mRNA_H-paniculata_contig19165.4811.1 vs. uniprot
Match: A0A5H2XTJ8_PRUDU (Integrase catalytic domain-containing protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5H2XTJ8_PRUDU) HSP 1 Score: 150 bits (380), Expect = 3.860e-37 Identity = 77/191 (40.31%), Postives = 114/191 (59.69%), Query Frame = 2
Query: 137 RFAIIFADDYSRMRKV*TLKHKSEALWTLKQFERDIAKAKGLQIQCLQSDQRGELRGEAFRQFCAGNGIKQEFSAAYTPQQNGVVDRSWRSVFEMTRSKMITANMGRRYWAKAARAAVYCLNRAPTRPHNGGTPNEVWHNTTPKLKHLRVFGCMAYVMFQSQQRQKLDDQAWVGVFLGYNEDSPSYRINDP 709
R+ ++ DD++RM V L++KSEA + K+F+ G ++QC++SD+ GE F +FC NGI+++ + AYTPQQNGVV+R R+V EM +S + M W +A AVY LNR PT+ N TP E + P + HL+VFG + YV ++ R KL+ ++ GVF+GY YR+ DP
Sbjct: 10 RYFMLIIDDFTRMIWVYFLRNKSEAFYCFKKFKSMTELQTGHKVQCIRSDRGGEFLSTDFLEFCEANGIQRQLTMAYTPQQNGVVERKNRTVIEMAKSMLHEKGMPYFLWTEAVHTAVYLLNRCPTKALNNITPFEAYSGRKPGIAHLKVFGSLCYVHVPTELRHKLEPKSTKGVFVGYATCEKGYRVFDP 200 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19165.4811.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig19165.4811.1 >prot_H-paniculata_contig19165.4811.1 ID=prot_H-paniculata_contig19165.4811.1|Name=mRNA_H-paniculata_contig19165.4811.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=117bp MSIFCTVFSLAAKHDFELEGMDVDVAYFNAPVEEELFVKLPPAFSPFSRDback to top mRNA from alignment at H-paniculata_contig19165:1018..3789+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig19165.4811.1 ID=mRNA_H-paniculata_contig19165.4811.1|Name=mRNA_H-paniculata_contig19165.4811.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2772bp|location=Sequence derived from alignment at H-paniculata_contig19165:1018..3789+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig19165:1018..3789+ >mRNA_H-paniculata_contig19165.4811.1 ID=mRNA_H-paniculata_contig19165.4811.1|Name=mRNA_H-paniculata_contig19165.4811.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at H-paniculata_contig19165:1018..3789+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |