mRNA_H-paniculata_contig19165.4812.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19165.4812.1
Unique NamemRNA_H-paniculata_contig19165.4812.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig19165.4812.1 vs. uniprot
Match: A0A151R6U8_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=5 Tax=Cajanus cajan TaxID=3821 RepID=A0A151R6U8_CAJCA)

HSP 1 Score: 187 bits (476), Expect = 1.910e-45
Identity = 183/686 (26.68%), Postives = 295/686 (43.00%), Query Frame = 2
Query:  131 GLRFAIIFADDYSRMRKV*TLKHKSEALWTLKQFERDIAKAKGLQIQCLQSDQRGELRGEAFRQFCAGNGIKQEFSAAYTPQQNGVVDRSWRSVFEMTRSKMITANMGRRYWAKAARAAVYCLNRAPTRPHNGGTPNEVWHNTTPKLKHLRVFGCMAYVMFQSQQRQKLDDQAWVGVFLGYNEDSPSYRINDPETIASS*AGT*DLTKRIS*PVIADSWSTTRPET*KACFST----VGHTSRDI----APEPNEEM*PTRKTQRQRRLAPAPTRTAP*AMTIIMKTIMTRR*TMLNQKLKTHRRSRNLRQKH*RAQRQANGARQWRRNGGRWSNMGCGIARTRGGYW*GGRRSVPNEFSSPH*SRAAAWHVT-----------------KRD**LKVYHAWRVKLSLKPVPP*LACRYFVLFSAWPPNMISN*KAWT*MW-----HISMPP*KKNCL--------LSYRPRFPLSLEI*RLCAAYIKACMASSRAAETGVTLLTIFL--LG*D*CSTTDLCLYFSRDEGGETEIPVAVYVDD-LVIAEHREKVDEFKHNISRRFRMKDLGCLSRVLRIEVRRDRPDGTISISQGCYICEVLKRYSFDGCRGMPTPVEGKVKILEPDSGRNGIS------IEYRGMVGPLMYASIGTRPDIAYAVQQAARFMEDPCREDISTCKRI 2047
            G ++ + F DDYSR   V  +K KS+     K+F+  +    G +I+CL++D  GE     F  FC   GIK++F+ A+TPQQNGV +R  R++ E TR+ + TA + + +WA+A + A Y +NR+P+      TP E+W+        L VFGC  YVM+ SQ+R KLD ++   +FLGY ++   YR+ DP       A    +++ +   V A++      E       T    +G  S++     A + ++E  P        R     T+        +M +       +L ++                               G  S     +  +    W     ++  E  + H  R   W +                  KRD   +V   +R +L +K         +  +FS  P   ++  +    M      H+     K   L           +P          L     K+     +A          F+  LG +  S+ D C Y++R +  +  I + +YVDD LV+  +++++ E K  ++R F MKDLG  +++L +++ RDR +  I +SQ  Y+ +VL+R++   C+ + TP+    K+    S  N         + Y   VG LMYA I TRPDIA AV   +RFM DP RE  S  KRI
Sbjct:  449 GAKYFVSFIDDYSRRLWVYPIKKKSDVFPVFKEFKAQVELDTGKRIKCLRTDNGGEYIDGDFLAFCKQEGIKRQFTVAHTPQQNGVAERMNRTLLERTRAMLRTAGLAKSFWAEAVKTACYLINRSPSTAIGLKTPMEMWNGKPSNYSSLHVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKGYRLWDPT------ARKVVVSRDV---VFAETELQKEQENDSTIKDTSIVEIGGKSKEDDTSEAEQEHDEQEPNEDNDGDVRRTTRQTKKPSWHSDYVMASHDAY--CLLTEE-------------------------------GEPSTFQEALRSSDVSQW---MAAMHEEIEALH--RNKTWELVDLPKGRKAIGCKWVYKIKRDGNDQV-ERYRARLVVKGYAQKEGIDFNEIFS--PVVRLTTIRVVLAMCAAFNLHLEQLDVKTAFLHGELQEEIYMLQPEGFKEQGKENLVCRLTKSLYGLKQAPRCWYKRFDSFIISLGYNRLSS-DHCTYYNRFDDNDFII-LLLYVDDMLVVGPNKDQIQELKAQLAREFDMKDLGPANKILGMQIHRDRKNRRIWLSQKNYLLKVLRRFNMQDCKPISTPLPVNYKLSSSMSPSNEAERMEMSRVPYASAVGSLMYAMICTRPDIAQAVGAVSRFMADPGREHWSIVKRI 1082          
BLAST of mRNA_H-paniculata_contig19165.4812.1 vs. uniprot
Match: B8YLY7_LOTJA (Gag-Pol polyprotein n=1 Tax=Lotus japonicus TaxID=34305 RepID=B8YLY7_LOTJA)

HSP 1 Score: 182 bits (462), Expect = 1.090e-43
Identity = 185/680 (27.21%), Postives = 287/680 (42.21%), Query Frame = 2
Query:  131 GLRFAIIFADDYSRMRKV*TLKHKSEALWTLKQFERDIAKAKGLQIQCLQSDQRGELRGEAFRQFCAGNGIKQEFSAAYTPQQNGVVDRSWRSVFEMTRSKMITANMGRRYWAKAARAAVYCLNRAPTRPHNGGTPNEVWHNTTPKLKHLRVFGCMAYVMFQSQQRQKLDDQAWVGVFLGYNEDSPSYRINDPETIASS*AGT*DLTKRIS*PVIADSWSTTRPET*KACFSTVGHTSRDIAPEPNEEM*PTRKTQRQRRLAPAPTRTAP*AMTIIMKTIMTRR*TMLNQKLKTHRRSRNLRQKH*RAQRQANGARQWRRNGGRWSNMGCGIARTRGGYW*GGRRSVPNEFSSPH*SRAAAWHVT-----------------KRD**LKVYHAWRVKLSLK---------------PVPP*LACRYFVLFSAWPPNMISN*KAWT*MWHISMPP*KKNCLLSYRPRFPLSLEI*RLCAAYIKACMASSRAAETGVTLLTIFL--LG*D*CSTTDLCLYFSRDEGGETEIPVAVYVDD-LVIAEHREKVDEFKHNISRRFRMKDLGCLSRVLRIEVRRDRPDGTISISQGCYICEVLKRYSFDGCRGMPTPVEGKVKI---LEPDSGRNGIS---IEYRGMVGPLMYASIGTRPDIAYAVQQAARFMEDPCREDISTCKRI 2047
            G ++ + F DDYSR   V  +K KS      K+F+  +    G +I+CL++D  GE     F  FC   GI ++F+ A+TPQQNGV +R  R++ E TR+ + TA + + +WA+AA+ A Y +NR+P+      TP E+W         LRVFGC  YVM+ SQ+R KLD ++    FLGY ++   YR+ DP       A    +++ +   +  ++      +       T      + + E N E  P            A  R                R T   +K   H  S  +   H         A       G  S     +  +    W     ++  E  + H  R   W +                  KRD   +V   +R +L +K               PV      R  +   A     +      T   H  +    +  +   +P      E   L     K+     +A          F+  LG +  S+ D C Y+ R + G+  I + +YVDD LV+  ++++V E K  ++R F MKDLG  +++L +++ RDR D  I +SQ  Y+ +VL+R++      + TP+    K+   + P S    +    + Y   VG LMYA I TRPDIA AV   +RFM DP +E  +  KRI
Sbjct:  499 GAKYFVSFIDDYSRRLWVYPIKKKSGVYSVFKEFKAQVELETGKRIKCLRTDNGGEYTDGDFLAFCKQEGITRQFTVAHTPQQNGVAERMNRTLLERTRAMLKTAGLAKSFWAEAAKTACYVINRSPSTAIGLKTPMEMWKGKPGDYSSLRVFGCPVYVMYNSQERTKLDPKSRRCTFLGYADNVKGYRLWDPT------ARKIFVSRDV---IFVENELQKEQKNDGTTKETATVEIEEKSGEENSEAEPXXXXXXXXXXXDAEPR----------------RTTRQIRKPSWH--SEYVMASH--------DAYCLLSEDGEPSTFHEAVNGSDASLW---MAAMQEEIEALH--RNNTWELVELPKGRKAIGNKWVFKIKRDGNDQV-ERYRARLVVKGYAQKEGIDFNEIFSPVVRLTTIRIVLAMCAAFELHLEQLDVKTAFLHGEL----EEEIYMLQPEGFEEKERENLVCRLTKSLYGLKQAPRCWYKRFDSFIMSLGYNRLSS-DHCTYYKRFDDGDFII-LLLYVDDMLVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDRKIWLSQKNYLQKVLRRFNMQDYNPISTPLPVNYKLSSSMIPSSEAERMEMSRVPYASAVGSLMYAMICTRPDIAQAVGTVSRFMADPGKEHWNAVKRI 1131          
BLAST of mRNA_H-paniculata_contig19165.4812.1 vs. uniprot
Match: Q7G6A8_ORYSJ (Os10g0130700 protein n=3 Tax=Oryza sativa TaxID=4530 RepID=Q7G6A8_ORYSJ)

HSP 1 Score: 182 bits (462), Expect = 1.190e-43
Identity = 191/703 (27.17%), Postives = 300/703 (42.67%), Query Frame = 2
Query:  131 GLRFAIIFADDYSRMRKV*TLKHKSEALWTLKQFERDIAKAKGLQIQCLQSDQRGELRGEAFRQFCAGNGIKQEFSAAYTPQQNGVVDRSWRSVFEMTRSKMITANMGRRYWAKAARAAVYCLNRAPTRPHNGGTPNEVWHNTTPKLKHLRVFGCMAYVMFQSQQRQKLDDQAWVGVFLGYNEDSPSYRI------------------------NDPETIASS*-------------AGT*DLTKRIS*PVIADSW--STTRPET*KACFSTVGHTS--RDIAPEPNEEM*PTRKTQRQRRLAPAPTRTAP*AMTIIMKTIMTRR*TMLNQKLKTHRRSRNLRQKH*RAQRQANGARQWRR----------NGGRWSNMGCGIARTRGGY-W*GGRRSVPNEFSSPH*SRAAAWHVTKRD**LKVYHAWRVKLSLKPVPP*LACRYFVLFSAWPPNMISN*KAWT*MWHISMPP*KKNCLLS---YRPRFPLSLE------I*RLCAAYIKACMASSRA--AETGVTLLTIFLLG*D*CSTTDLCLYFSRDEGGETEIPVAVYVDDLVIA-EHREKVDEFKHNISRRFRMKDLGCLSRVLRIEVRRDRPDGTISISQGCYICEVLKRYSFDGCRGMPTPVEGKVKILEPDSGRNGISIEYRGMVGPLMYASIGTRPDIAYAVQQAARFMEDPCREDISTCKRI 2047
            G ++ ++  DD SR   +  L  K EA   +KQF+  +    G +++ L++D+ GE     F  +CA +G+++E +A Y+PQQNGVV+R  ++V    RS +  A M   +W +A  AAVY LNR+PT+  NG TP+E WH   P ++HLRVFGC+ YV       +KLDD+    VF+GY + S +YR+                         DPET A+               +   DL ++ S PV   ++  ST  P +     + V   S    + P  NE     R+ Q                  I+  T         +Q L       +L +    A++Q      WR+          +   WS     +     G  W    +  P+     H +R  A    ++            +    PV      R  +         ++  K W  + H+ +     N  L    Y  + P  +E      + RL  A +     + RA  A+   TL+++  +     S T+  +Y      G + + V VYVDDL+I+     ++D FK  + ++FRM DLG LS  L +EV   + D  + +SQ  Y  ++L++   +GC     P+E ++K+     G    S  YR  VG L Y  + TRPD+AY+V   +RFME P  E  +  K I
Sbjct:  594 GRKYFLLLVDDMSRHMWIRLLSGKHEAATAIKQFQVGVELESGRKLRALRTDRGGEFTSVEFMDYCADHGMRRELTAPYSPQQNGVVERRNQTVVAAARSMLKAAGMPACFWGEAVVAAVYVLNRSPTKALNGVTPHEAWHGRRPSVEHLRVFGCVGYVKTVKPNLRKLDDRGTRMVFIGYEQGSKAYRMYDPVARRVCVSRDVVFDEAATWAWRDPETEATEEEEFTVDFFVNPVDSVVADLGEQASTPVQGGTYPASTATPPSPPEVPAGVEFCSPPNSVTPGTNEGPIRYRRVQ-----------------DILSATEPVLDFDYSDQCLLASEEPMSLAE----AEQQLC----WRQAMQEELKSIEDNQTWSFAELPVGHKAIGLKWVYKVKKDPSGVVVKHKARLVAKGYVQQQ-------GIDFEEVFAPVARMETVRLLIA--------VAANKGWE-IHHMDVKSAFLNGDLEEEVYVVQPPGFIEKGKEGQVLRLKKA-LYGLKQAPRAWNAKLHNTLISLNFIK----SETESAVYVRGT--GSSRLIVGVYVDDLIISGAQASEIDFFKEEMKKKFRMSDLGLLSYYLGMEVV--QKDDGVFLSQTAYAAKILEKTGMEGCNSTQVPMEARLKLKRESGGEGVDSTMYRSTVGSLRYL-VNTRPDLAYSVGYVSRFMEKPTSEHWAAVKHI 1245          
BLAST of mRNA_H-paniculata_contig19165.4812.1 vs. uniprot
Match: B8YLY6_MEDTR (Gag-Pol polyprotein n=4 Tax=Medicago truncatula TaxID=3880 RepID=B8YLY6_MEDTR)

HSP 1 Score: 180 bits (456), Expect = 6.060e-43
Identity = 185/679 (27.25%), Postives = 281/679 (41.38%), Query Frame = 2
Query:  131 GLRFAIIFADDYSRMRKV*TLKHKSEALWTLKQFERDIAKAKGLQIQCLQSDQRGELRGEAFRQFCAGNGIKQEFSAAYTPQQNGVVDRSWRSVFEMTRSKMITANMGRRYWAKAARAAVYCLNRAPTRPHNGGTPNEVWHNTTPKLKHLRVFGCMAYVMFQSQQRQKLDDQAWVGVFLGYNEDSPSYRINDPETIASS*AGT*DLTKRIS*PVIADSWSTTRPET*KACFSTVGHTSRDIAPEPNEEM*PTRKTQRQRRLAPAPTRTAP*AMTIIMKTIMTRR*TMLNQKLKTHRRSRNLRQKH*RAQRQANGARQWRRNGGRWSNMGCGIARTRGGYW*GGRRSVPNEFSSPH*SRAAAWHVT-----------------KRD**LKVYHAWRVKLSLK---------------PVPP*LACRYFVLFSAWPPNMISN*KAWT*MWHISMPP*KKNCLLSYRPRFPLSLEI*RLCAAYIKACMASSRAAETGVTLLTIFLLG*D*CS-TTDLCLYFSRDEGGETEIPVAVYVDD-LVIAEHREKVDEFKHNISRRFRMKDLGCLSRVLRIEVRRDRPDGTISISQGCYICEVLKRYSFDGCRGMPTPVEGKVKILEPDSGRNGIS------IEYRGMVGPLMYASIGTRPDIAYAVQQAARFMEDPCREDISTCKRI 2047
            G R+ + F DDYSR   V  +K KS+     K F+  I      +I+CL++D  GE     F  FC   GI ++F+ A+TPQQNGV +R  R++ E TR+ + TA M + +WA+AA+ A Y +NR+P+   +  TP E+W         L VFGC  YVM+ SQ++ KLD ++   +FLGY ++   YR+ DP             T R     +  S      E           TS++ A    EE        + +                       RR T   QK      S  +   H         A       G  S     +  +    W     ++  E  + H  R   W +                  KRD   +V   +R +L +K               PV      R  +   A     +      T   H  +    +  +   +P          L     K+     +A          F++  D    ++D C Y+ R +G +  I + +YVDD LV+  ++++V E K  ++R F MKDLG  +++L +++ RDR D  I +SQ  Y+ +VL+R++   C+ + TP+    K+    S  N         + Y   VG LMYA I TRPDIA AV   +RFM DP +E  +  KRI
Sbjct:  499 GARYFVSFIDDYSRRLWVYPIKKKSDVFPVFKAFKAQIELETEKKIKCLRTDNGGEYVDGEFLAFCKQEGIVRQFTVAHTPQQNGVAERMNRTLLERTRAMLKTAGMAKSFWAEAAKTACYVINRSPSTAIDLKTPMEMWKGKPVDYSSLHVFGCPVYVMYNSQEKTKLDPKSRKCIFLGYADNVKGYRLWDP-------------TARK----VVVSRDVVFAENELQSEQKNDSTSKETAIVQMEE--------KSKXXXXXXXXXXXXXXXXXXVNDGVRRSTRQTQKPSWQ--SDYVMTSH--------DAYCLITEEGEPSTFHEALNGSDASQW---MTAMHEEMEALH--RNKTWELVELPKGRKAIGNKWVYKIKRDGNDQV-ERYRARLVVKGYAQKEGIDFNEIFSPVVRLTTIRVVLAMCAALDLHLEQLDVKTAFLHGEL----EEEIYMLQPEGFKEQGKENLVCRLTKSLYGLKQAPRCWYKRFDSFIISLDYNRLSSDHCTYYKRFDGNDFII-LLLYVDDMLVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDRKIWLSQKNYLRKVLRRFNMQDCKPISTPLPVNFKLSSGMSPSNEAERMEMSRVPYASAVGSLMYAMICTRPDIAQAVGVVSRFMADPGKEHWNAVKRI 1131          
BLAST of mRNA_H-paniculata_contig19165.4812.1 vs. uniprot
Match: A0A060SSE0_PYCCI (Integrase catalytic domain-containing protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SSE0_PYCCI)

HSP 1 Score: 179 bits (453), Expect = 1.610e-42
Identity = 152/533 (28.52%), Postives = 235/533 (44.09%), Query Frame = 1
Query: 1015 SSEPKSTAEALKSPEAGKWRAAVEEEWRALVKHGMWDSEDPGRLLVGRKAICTKRIFKPTLK*GGSVARYKARLVAQGLSRVEGEAFFETGASVARMSIFCTVFSLAAKHDFELEGMDVDVAYFNAPVEEELFVKLPPAFSPFSRDITFVRRLHKSLYGLKQSGRNWSNTLDDFLVGIGLVFHYRPMLVLLSRRRRRDRNSRCRLCRRPGHR*TS*ESRRVQAQHKSAV*DERLGLPLARVENRSTTRPPRWYHINIPRLLHLRGTEKIQF*RVSRHAHP-----------CRGKSEDFGTRQWEKWHFN*IQRHGRTTHVCLDRN*T*YSIRGTTSSTFYG---------GPVSGRYQYMQAHFRYLTSVPDLGIMFGGK---SNGHDLEGFVDADWAEDVGYRKSTTGYIFKLHGGAISWCSSKQQLEAEFRMQEDHNIL----------------------------------EDESAINLSMGSGAHCRTKHIGVNWHGIREWLREGILALKYVQTGDQLADSLTKALS 2442
            S EP++  EA+  P+A +W+AA  EE  +  K  ++D  +  R    RK +  K +F+      G + +YKARLVA+G ++VEG  + +T A V + +    + + AAKHD E+  MDV  A+ N  +EEE+F++ PP F    +D   V RL KSLYGLKQ+ R W   +      +G         V   R +  D                  +   + A+ ++AV  + + L L      S     RW  I    ++H R  + I    +S+H +            CR  S      Q +    N  +   R     L      Y++ GT     +           P    +  +   ++YL    D  ++F G    S G +L G+ +ADWA DV  R+S TG+IFKL   AISW S KQ   A    + ++  L                                  +++SA++L+  S  H RTKHI +  H IR+ + +  + ++Y+ TGDQ+AD LTKAL+
Sbjct:  961 SDEPRTYQEAMSRPDAEQWKAACAEELLSFAKAELYDEVERPR---NRKVVDCKWVFRIKHGPDGKIQKYKARLVAKGFTQVEGVDYTDTFAPVTKFASIRMLLAFAAKHDLEVHQMDVKSAFLNGDLEEEIFMEAPPGFQ---QDKAHVWRLQKSLYGLKQASREWYKKVRALFESLGYSRSNADHSVFYKRGKDGDLTVVAVYV----------DDMLIFAKDRAAV--DHIKLELGVPYEMSDLGEARW--ILGMEIIHDRARKTIT---LSQHQYVENILKTHGMANCRPVSTPMAPNQ-KLLKLNVPEVDERAYQSALGS--LMYAMLGTRPDLAFAVGMLSKHAASPGKDHWTALMRVYKYLRGTSDHALVFDGSALCSEGGNLVGYSNADWAGDVNDRRSVTGFIFKLGDAAISWQSKKQDCVALSTTEAEYIALAAASKEALWLRTFLSELYGMTFDAPGSPGTLILVDNQSAMSLAKNSTFHDRTKHIAIRHHFIRDEIEKQAIHVEYIPTGDQVADILTKALA 1467          
BLAST of mRNA_H-paniculata_contig19165.4812.1 vs. uniprot
Match: A0A4Y1RLQ4_PRUDU (Transposable element protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1RLQ4_PRUDU)

HSP 1 Score: 174 bits (441), Expect = 5.800e-42
Identity = 183/694 (26.37%), Postives = 286/694 (41.21%), Query Frame = 2
Query:  116 TKAFEGLRFAIIFADDYSRMRKV*TLKHKSEALWTLKQFERDIAKAKGLQIQCLQSDQRGELRGEAFRQFCAGNGIKQEFSAAYTPQQNGVVDRSWRSVFEMTRSKMITANMGRRYWAKAARAAVYCLNRAPTRPHNGGTPNEVWHNTTPKLKHLRVFGCMAYVMFQSQQRQKLDDQAWVGVFLGYNEDSPSYRINDPETIASS*AGT*DLTKRIS*PVIA--------DSWSTTRPET*KACFSTVGHTSRDIAPEPNEEM*PTR-------------KTQRQRRLAPAPTRTAP*AMTIIMKTIMTRR*TMLNQKLKTHRRSRNLRQKH*RAQRQANGARQWRRNGGRWSNMGCGI--------ARTRGGYW*GGRRSVPNEFSSPH*SRAAAWHVT-----KRD**LK-VYHA----------WRVKLSLKPVPP*LACRYFVLFSAWPP----NMISN*KAWT*MWHISMPP*KKNCLLSYR---------PRFPLSLEI*RLCAAYIKACMASSRAAETGVTLLTIFL--LG*D*CSTTDLCLYFSRDEGGETEIPVAVYVDDLVIA-EHREKVDEFKHNISRRFRMKDLGCLSRVLRIEVRRDRPDGTISISQGCYICEVLKRYSFDGCRGMPTPVEGKVKILEPDSGRNGISIEYRGMVGPLMYASIGTRPDIAYAVQQAARFMEDP 2014
            T +  G R+ + F DDYSR   V  LK+KSE     K F+    K  G  ++ L+SDQ GE     F  F   NGIK +F+A YTPQQNGV +R  R++ E+ RS +    M  R+WA+A   AVY LNRA +    G TP E W    P + HLR+FG +AY     + R+KLDD++   + +GY+E + +Y++ +P            LT +I   +++        ++W+ +  E        +G  + D+ P        +              + QR+   A  P+   P +  +++                                           NGG  +N    +          ++   W    +++  E  S    +   W +      K+   +K VY            ++ +L  K         Y  +F+         M+    A    W +     K   L  +          P +    E  ++C    KA     +A     + +  F    G   C   +  LY  ++  GE  I V +YVDDL+    + +  D FK  +S+RF M DLG L   L IEV+++  +  I ISQ  Y  E+LKR+  +  + + TP+E  VKI + D         +R +VG L+Y +  TRPD+ YAV   +RFME P
Sbjct:    3 TTSTGGNRYFLTFIDDYSRKTWVYFLKYKSEVFDYFKVFKALAEKQSGFALKTLRSDQGGEFSSNVFENFLKENGIKHQFTARYTPQQNGVAERKNRTIMELARSMLKAKAMPNRFWAEAVACAVYLLNRASSNSVEGKTPQEAWSGLKPCISHLRIFGSIAYSHIPDETRRKLDDKSEKCILVGYSEKAKAYKLFNP------------LTNKI---IVSRDVKFNEEEAWNWSEAENQSPILLDIGLENPDLTPPTTSSQGLSXXXXXXXXXXXEISRGQRRSTRAHQPSTRYPSSDYVLIT------------------------------------------NGG--TNFALFVDADPIMFEEASKDEKW---VKAMDQEIDSI--KKNDTWELVDLPQGKKPIGVKWVYKTKLNAQGEVEKYKARLVAKGYKQNYGIDYNEVFAPVARFDTIRMVLALAAQN-CWKVFQMDVKSAFLQGFLEEEVYVVQPPGYVQGNEETKVCRLK-KALYGLKQAPRAWYSRIDAFFQEYGFHKCPY-EHTLYTKKNSQGEILI-VCLYVDDLIFTGSNAQMCDNFKMIMSQRFEMTDLGLLHFFLGIEVKQN--ENGIYISQKKYAKELLKRFRLENAKSIATPMEVGVKIGKNDGSTMVNQTLFRSLVGGLLYLTT-TRPDLTYAVSFLSRFMESP 625          
BLAST of mRNA_H-paniculata_contig19165.4812.1 vs. uniprot
Match: Q6BCY1_IPOBA (Gag-Pol n=1 Tax=Ipomoea batatas TaxID=4120 RepID=Q6BCY1_IPOBA)

HSP 1 Score: 175 bits (443), Expect = 2.450e-41
Identity = 179/690 (25.94%), Postives = 290/690 (42.03%), Query Frame = 2
Query:  131 GLRFAIIFADDYSRMRKV*TLKHKSEALWTLKQFERDIAKAKGLQIQCLQSDQRGELRGEAFRQFCAGNGIKQEFSAAYTPQQNGVVDRSWRSVFEMTRSKMITANMGRRYWAKAARAAVYCLNRAPTRPHNGGTPNEVWHNTTPKLKHLRVFGCMAYVMFQSQQRQKLDDQAWVGVFLGYNEDSPSYRINDP---ETIASS*AGT*DLTKRIS*PVIADSWSTTRPET*KACFSTVGHTSRDIAPEP-------NEEM*PTRKTQRQRRLAPAPTRTAP*AMTIIMKTIMTRR*TMLNQKLKTHRRSRNLRQKH*RAQRQANGARQWRRNGGRWSNMGCGIARTRGGYW*GGRRSVPNEFSSPH*SRAAAWHVT-----------------KRD**LKVYHAWRVKLSLK---------------PVPP*LACRYFVLFSAWPPNMISN*KAWT*MWHISMPP*KKNCLLSYRPRFPLSLEI*RLCAAYIKACMASSRAAETGVTLLTIFL--LG*D*CSTTDLCLYFSRDEGGETEIPVAVYVDDLVIA-EHREKVDEFKHNISRRFRMKDLGCLSRVLRIEVRRDRPDGTISISQGCYICEVLKRYSFDGCRGMPTPVEGKVKI---LEP--DSGRNGIS-IEYRGMVGPLMYASIGTRPDIAYAVQQAARFMEDPCREDISTCKRI 2047
            G ++ + F DDYSR   V  +K KS+   T K F+  +    G +I+C ++D  GE   E F  FC   GIK++F+ AYTPQQNGV +R  R++ E TR+ +  A + + +WA+A   A Y +NRAP+      TP E+W        +L +FG + Y M+ +Q+  KLD ++    FLGY +    YR+ DP   + + S       +  R+    + DS    +PET +                        +     TR++ R++R    PT  +   M                                     + N A       G  S     I  +    W     ++  E  + H  +   W +                  KR+   +V   +R +L +K               PV      R  +   A     +      T   H  +    +  +   +P      E   L     K+     +A          F+  LG +  +  D C YF R  G +  + + +YVDD+++A  +++ +DE K  ++R F MKDLG  +++L +++ RDR +  I +SQ  Y+ ++L R+S   C+ + TP+   +K+   + P  + GR  +S + Y   VG LM+A I TRPDIA AV   +R+M +P RE  +  KRI
Sbjct:  489 GAKYFVSFIDDYSRRCWVYPIKKKSDVFATFKAFKARVELDSGKKIKCFRTDNGGEYTSEEFDDFCKKEGIKRQFTVAYTPQQNGVAERMNRTLLERTRAMLRAAGLEKSFWAEAVNTACYLVNRAPSTAIELKTPMEMWTGKPVDYSNLHIFGSIVYAMYNAQEITKLDPKSRKCRFLGYADGVKGYRLWDPTAHKVVISR--DVIFVEDRLQRGEVDDSTEKEKPETTQIXXXXXXXXXXXXXXXXXXXXXXXSSGAPTTRQSDREKR---RPTWHSDYVM-------------------------------------EGNVAYCLLTEDGEPSTFQEAINSSDVSQW---TAAMQEEIEALH--KNNTWDLVPLPQGRKPIGNKWVFKIKRNGDDQV-ERYRARLVVKGYAQKEGIDFNEIFSPVVRLTTVRVVLAMCATFNLHLEQLDVKTAFLHGDL----EEEIYMLQPEGFEDKENQNLVCRLNKSLYGLKQAPRCWYKRFDSFIMCLGYNRLNA-DPCAYFKRF-GKDNFVILLLYVDDMLVAGPNKDHIDELKAQLAREFEMKDLGPANKILGMQIHRDRGNRKIWLSQKNYLKKILSRFSMQDCKSISTPLPINLKVSSSMSPSNEEGRMEMSRVPYASAVGSLMFAMICTRPDIAQAVGVVSRYMANPGREHWNCVKRI 1124          
BLAST of mRNA_H-paniculata_contig19165.4812.1 vs. uniprot
Match: UPI001C35D1C3 (Uncharacterized protein n=1 Tax=Carya illinoinensis TaxID=32201 RepID=UPI001C35D1C3)

HSP 1 Score: 175 bits (444), Expect = 2.550e-41
Identity = 171/676 (25.30%), Postives = 281/676 (41.57%), Query Frame = 2
Query:  131 GLRFAIIFADDYSRMRKV*TLKHKSEALWTLKQFERDIAKAKGLQIQCLQSDQRGELRGEAFRQFCAGNGIKQEFSAAYTPQQNGVVDRSWRSVFEMTRSKMITANMGRRYWAKAARAAVYCLNRAPTRPHNGGTPNEVWHNTTPKLKHLRVFGCMAYVMFQSQQRQKLDDQAWVGVFLGYNEDSPSYRINDPETIASS*AGT*DLTKRIS*PVIADSWSTTRPET*KACFSTVGHTSRDIAPEP------NEEM*PTRKTQRQRRLAPAPTRTAP*AMTIIMKTIMTRR*TMLNQKLKTHRRSRNLRQKH*RAQRQANGARQWRRNGGRWSNMGCGIARTRGGYW*GGRRSVPNEFSSPH*SRAAAWHVTKRD**LKVYH---AWRVKLS---------------------------LKPVPP*LACRYFVLFSAWPPNMISN*KAWT*MWHISMPP*KKNCLLSYRPRFPLSLEI*RLCAAYIKACMASSRAAETGVTLLTIFL--LG*D*CSTTDLCLYFSRDEGGETEIPVAVYVDDLVIAEHR-EKVDEFKHNISRRFRMKDLGCLSRVLRIEVRRDRPDGTISISQGCYICEVLKRYSFDGCRGMPTPVEG-----KVKILEPDSGRNGIS-IEYRGMVGPLMYASIGTRPDIAYAVQQAARFMEDPCRE 2023
            G  + + F DD+SR   +  LKHKSE     K  +  +    GL+++CL+SD  GE     F+++CA  GI+ E +   TPQQNGV +R  R++ E  RS  + A +   +WA A   AVY +NR P+ P + G P+EVW     K  HL+ FGC++YV+  S  R KL+ ++    F+GY +++  YR  D +      +      ++I     + + S   P+  + C       S   AP P      +E   PT   +R  R    P R  P                 LN  L T                          +GG   +    +       W     ++ +E  S   ++   W +T+     K  H    +RVK                               PV      R  +   A     +      T   H  +   +++  +     F +  +   +C    K+     +A          F+   G   C   D C Y    +   + I + +YVDD++IA    ++++  K ++S  F MKDLG   ++L + + RDR  GT+ +SQ  Y+ +VL R++ D  + + TP+       K ++ E +  ++ +S + Y   +G LMYA + TRPDIA+AV   +R+M +P ++
Sbjct:   64 GSLYYVTFIDDHSRKVWIYFLKHKSEVFNVFKICKAMVETETGLKLKCLRSDNGGEYVDGGFKEYCAALGIRMEKTIPGTPQQNGVAERMNRTINERARSMRLHAGLPPTFWADAVSTAVYLINRGPSVPLDCGLPDEVWSGKEVKFSHLKTFGCLSYVLIDSDSRSKLEAKSRKCYFIGYGDEAFGYRFWDDQGRKIIRSRNVIFNEKIMYNDKSSTTSAVAPQESEFCRDVSDEESGSSAPIPIIPQAVSEPSTPTVAVRRSVRTIRPPQRFLP----------------TLNYILLT--------------------------DGGEPQSYKETLQDENSSKW---ELAMKDEMDSLLGNQT--WELTELPSGKKALHNKWVYRVKTEHDGSKRYKARLVVKGFQQKQGIDYSEIFSPVVKITTIRMVLAMVATEDLFLEQLDVKTAFLHGDL---EEDIYMHQPEGFVVQGKEGSVCRLK-KSLYGLKQAPRQWYKKFDNFMHSAGYMRCQA-DHCCYVRHFDN--SYIILLLYVDDMLIAGASIDEINNMKKHMSEHFAMKDLGAAKQILGMRIVRDRVRGTLRLSQAEYVKKVLSRFNMDKAKPVGTPLGSHFRLSKNQLPESEEEQDYMSKVPYASAIGSLMYAMVCTRPDIAHAVGVVSRYMSNPGKQ 685          
BLAST of mRNA_H-paniculata_contig19165.4812.1 vs. uniprot
Match: A0A392LYY6_9FABA (Copia-type polyprotein n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392LYY6_9FABA)

HSP 1 Score: 173 bits (438), Expect = 9.650e-41
Identity = 186/677 (27.47%), Postives = 300/677 (44.31%), Query Frame = 2
Query:  137 RFAIIFADDYSRMRKV*TLKHKSEALWTLKQFERDIAKAKGLQIQCLQSDQRGELRGEAFRQFCAGNGIKQEFSAAYTPQQNGVVDRSWRSVFEMTRSKMITANMGRRYWAKAARAAVYCLNRAPTRPHNGGTPNEVWHNTTPKLKHLRVFGCMAYVMFQSQQRQKLDDQAWVGVFLGYNEDSPSYRINDPET---IASS*A----------GT*DLTKRIS*PVIADSWSTTRPET*KACFSTVGHTSRDI---APEPNEEM*PTRKTQRQRRLAPAPTRTAP*AMTIIMKTIMTRR*TMLNQKLKTHRRSRNLR------QKH*RAQRQANGARQWRRNGGRWSNMGCGI-ARTRGGYW*GGRRSVPNEFSSPH*SRAAAW-HVTKRD**LKVYHAWRVKLSLKPVPP*LACRYFVLFSA---WPPNMISN*KAWT*M--WHISMPP*KKNCLLSYRPRF-----PLS-LEI*RLCAAYI--KACMASSRAAETGVTLLTIFLL--G*D*CSTTDLCLYFSRDEGGETEIPVAVYVDDLVIAEH-REKVDEFKHNISRRFRMKDLGCLSRVLRIEVRRDRPDGTISISQGCYICEVLKRYSFDGCRGMPTPVEGKVKILEPDSGRNGISIEYRGMVGPLMYASIGTRPDIAYAVQQAARFMEDPCREDISTCKRI 2047
            R+ + F DD+SR   V  LK+KS AL   K+F   + K  G  I CL++D+ GE     F+++C  NGIK++ + AYTPQQNG+ +R  R++ +M RS +   ++ + +W +A   A+Y LNR+P       TP E W ++ P +KHLRVFGC+AY       R+KLDD++   +FLG +E+S +YR+ +P T   I S                D +K+++  VI+D          +        T  D+   A  PN  +                TR  P   +    TI        ++   +   +RNL        +   +  +A+ +++WR        M   I A  +   W      V  +           W + TK +   +V   ++ +L  K         Y  +F+    W  + I +  A   M  W++     K   L            PL  ++  R    Y   KA     +A     + +  +    G + C   +  L+   D+ G   I +++YVDDL+   +  E V +FK+++   F M DLG +   L IEV ++  D  I I Q  Y  E+L+R++ D    + +P+    K+ + D G      +++ +VG LMY +  TRPD+ +AV   ARFME P    +   KRI
Sbjct:  409 RYVLTFIDDFSRKTWVYFLKNKSSALNYFKKFRSMVEKESGSAICCLRTDRGGEFNSSEFKEYCEENGIKRQLTTAYTPQQNGIAERKNRTIMDMVRSMISGKDVPKSFWPEAVNWAIYILNRSPAAALPNMTPEEAWSSSKPTVKHLRVFGCIAYTHVPDSHRKKLDDKSVKCIFLGISEESKAYRLYNPTTKKIIISRDVKFVESEKWKWDEADSSKKLAEQVISDEEPDNANTNEELEADEAADTDEDVHSQASTPNSPVIDHIGASNSNLNDQGRTRKPPYWHSDYDTTI--------HEDELSDEDTRNLMAFGLCVDEDPNSYDEASKSQKWR------DAMNTEIEAIEKNNTW------VLTDLPKNAKVIGVKWIYKTKLNEKGEV-DKYKARLVAKGYAQKYGTDYKEVFAPVARW--DTIRSLLAIAAMKNWYVFQLDVKSAFLHGELTETVYVEQPLGYVKQGREDKVYKLHKALYGLKQAPRAWYSKIESYFQKEGFEKCPY-EHTLFVKVDKKGNWLI-ISLYVDDLIFTGNDSEMVQKFKNSMMNTFDMTDLGRMKHFLGIEVTQN--DQGIFICQQRYAKEILERFNMDKSNAVSSPIVTGSKLSKYDQGEEVNPTKFKQIVGSLMYLT-ATRPDLMFAVNLIARFMEHPVESHMVAAKRI 1057          
BLAST of mRNA_H-paniculata_contig19165.4812.1 vs. uniprot
Match: Q7XTU6_ORYSJ (OSJNBb0034I13.10 protein n=2 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q7XTU6_ORYSJ)

HSP 1 Score: 173 bits (438), Expect = 1.100e-40
Identity = 186/694 (26.80%), Postives = 295/694 (42.51%), Query Frame = 2
Query:  131 GLRFAIIFADDYSRMRKV*TLKHKSEALWTLKQFERDIAKAKGLQIQCLQSDQRGELRGEAFRQFCAGNGIKQEFSAAYTPQQNGVVDRSWRSVFEMTRSKMITANMGRRYWAKAARAAVYCLNRAPTRPHNGGTPNEVWHNTTPKLKHLRVFGCMAYVMFQSQQRQKLDDQAWVGVFLGYNEDSPSYRINDP-------------------------ETIASS*AGT*DLTKRIS*PVIADSWSTTRPET*KACFSTVGHTSRDIAPE-PNEEM*--PTRKTQ-------RQRRLAPAPTRTAP*AMTIIMKTIMTRR*TMLNQKLKTHRRSRNLRQKH*RAQRQANGARQWRRN-----GGRWSNMGCGIARTRGGY------W*GGRRSVPNEFSSPH*SRAAAWHVTKRD**LKVYHAWRVKLSLKPVPP*LACRYFVLFSA---WPPNMISN*KAWT*-----MWHISMPP*KKNCLLSYRPRFPLSLEI*RLCAAYIKACMASSRAAETGVTLLTIFLLG*D*CSTTDLCLYFSRDEGGETEIPVAVYVDDLVIAEHREK-VDEFKHNISRRFRMKDLGCLSRVLRIEVRRDRPDGTISISQGCYICEVLKRYSFDGCRGMPTPVEGKVKILEPDSGRNGISIEYRGMVGPLMYASIGTRPDIAYAVQQAARFMEDPCREDISTCKRI 2047
            G ++ ++  DD SR   +  L  K EA   +KQF+  +    G +++ L++D+ GE     F  +C   G+++E +A Y+PQQN VV+R  ++V    RS +  A +  R+W +A  AAVY LNR+PT+  +G TP E WH   P ++HLRVFGC+ YV       +KLDD+    VF+GY + S +YR+ DP                         +        T D       P +AD+   T     +A  S V        P  PN E    PT  T        R RR+    + T P     ++    + +  +  ++  +   +    +KH            WRR           N    +A    G+      W    +  P+     H +R  A    ++                 PV      R  V  +A   W  + +    A+         ++  PP        +  +   S  +    A Y       +  A+   TLL++        S T+  +Y      G++++ V VYVDDL+I   ++K +D FK  + +RF M DLG LS  L +EV + + +G I +SQ  Y  ++L++   +GC     P+E ++K+ +  +G      EYR +VG L Y  + TRPD+AY+V   +RFME P  E  +  K I
Sbjct:  594 GRKYFLLLVDDMSRHMWIRLLSGKHEAATAIKQFQAGVELESGRKLRALRTDRGGEFTSVEFMDYCTDRGMRRELTAPYSPQQNRVVERRNQTVVAAARSMLKAAGLPARFWGEAVVAAVYVLNRSPTKALDGVTPYEAWHGRRPSVEHLRVFGCVGYVKTVKPNLRKLDDRGTRMVFIGYEQGSKAYRMYDPVAQRVCVSRDVVFDETATWAWRDPEDAATEEEEFTVDFFVSPVAPSVADAGEQTGTPV-QAGVSPVSTGVLSSPPRAPNGEFCTPPTSVTPETDGGPVRYRRVQDILSTTEP-----VLDFDYSDQCLIATEEPTSFVEA----EKH----------ECWRRAMVEELRSVEENQTWSLAELPAGHKAIGLKWVYKLKKDPSGAIVKHKARLVAKGYVQQQ-------GVDFDEVFAPVARMETVRLLVALAAQKGWEIHHMDVKSAFLNGELEEEVYVVQPP-------GFDDKTNASKVLKLRKALYGLRQAPRAWNAKLDNTLLSLKFNK----SATESAVYVRGV--GDSKLIVGVYVDDLIITGSQKKEIDAFKLQMKQRFNMSDLGFLSYYLGMEVVQ-KGEG-IFLSQSAYAGKILEKTGMEGCNPTQVPMEARLKLSKEGTGECVDPTEYRSIVGSLRYL-VNTRPDLAYSVGYVSRFMEKPTSEHWAAVKHI 1244          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19165.4812.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A151R6U8_CAJCA1.910e-4526.68Retrovirus-related Pol polyprotein from transposon... [more]
B8YLY7_LOTJA1.090e-4327.21Gag-Pol polyprotein n=1 Tax=Lotus japonicus TaxID=... [more]
Q7G6A8_ORYSJ1.190e-4327.17Os10g0130700 protein n=3 Tax=Oryza sativa TaxID=45... [more]
B8YLY6_MEDTR6.060e-4327.25Gag-Pol polyprotein n=4 Tax=Medicago truncatula Ta... [more]
A0A060SSE0_PYCCI1.610e-4228.52Integrase catalytic domain-containing protein n=1 ... [more]
A0A4Y1RLQ4_PRUDU5.800e-4226.37Transposable element protein n=1 Tax=Prunus dulcis... [more]
Q6BCY1_IPOBA2.450e-4125.94Gag-Pol n=1 Tax=Ipomoea batatas TaxID=4120 RepID=Q... [more]
UPI001C35D1C32.550e-4125.30Uncharacterized protein n=1 Tax=Carya illinoinensi... [more]
A0A392LYY6_9FABA9.650e-4127.47Copia-type polyprotein n=1 Tax=Trifolium medium Ta... [more]
Q7XTU6_ORYSJ1.100e-4026.80OSJNBb0034I13.10 protein n=2 Tax=Oryza sativa subs... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19165contigH-paniculata_contig19165:1018..3795 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score98.6
Seed ortholog evalue2.4e-18
Seed eggNOG ortholog5111.M1W0E5
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs21AV1@147550,38DPC@33154,3G4P0@34397,3NUZ7@4751,3QNZW@4890,3TMCJ@5125,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelClavicipitaceae
Best eggNOG OGNA|NA|NA
Exons4
Model size2451
Cds size417
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19165.4812.1prot_H-paniculata_contig19165.4812.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19165 3314..3795 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929465.2436986-UTR-H-paniculata_contig19165:1017..20371622929465.2436986-UTR-H-paniculata_contig19165:1017..2037Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19165 1018..2037 +
1691480873.2497659-UTR-H-paniculata_contig19165:1017..20371691480873.2497659-UTR-H-paniculata_contig19165:1017..2037Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19165 1018..2037 +
1622929465.259289-UTR-H-paniculata_contig19165:2221..30881622929465.259289-UTR-H-paniculata_contig19165:2221..3088Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19165 2222..3088 +
1691480873.2699971-UTR-H-paniculata_contig19165:2221..30881691480873.2699971-UTR-H-paniculata_contig19165:2221..3088Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19165 2222..3088 +
1622929465.2719836-UTR-H-paniculata_contig19165:3166..33131622929465.2719836-UTR-H-paniculata_contig19165:3166..3313Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19165 3167..3313 +
1691480873.2791219-UTR-H-paniculata_contig19165:3166..33131691480873.2791219-UTR-H-paniculata_contig19165:3166..3313Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19165 3167..3313 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929465.291398-CDS-H-paniculata_contig19165:3313..35191622929465.291398-CDS-H-paniculata_contig19165:3313..3519Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19165 3314..3519 +
1691480873.2867436-CDS-H-paniculata_contig19165:3313..35191691480873.2867436-CDS-H-paniculata_contig19165:3313..3519Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19165 3314..3519 +
1622929465.3079145-CDS-H-paniculata_contig19165:3584..37951622929465.3079145-CDS-H-paniculata_contig19165:3584..3795Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19165 3585..3795 +
1691480873.2944522-CDS-H-paniculata_contig19165:3584..37951691480873.2944522-CDS-H-paniculata_contig19165:3584..3795Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19165 3585..3795 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19165.4812.1

>prot_H-paniculata_contig19165.4812.1 ID=prot_H-paniculata_contig19165.4812.1|Name=mRNA_H-paniculata_contig19165.4812.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=139bp
MQAHFRYLTSVPDLGIMFGGKSNGHDLEGFVDADWAEDVGYRKSTTGYIF
KLHGGAISWCSSKQQLEAEFRMQEDHNILEDESAINLSMGSGAHCRTKHI
GVNWHGIREWLREGILALKYVQTGDQLADSLTKALSTL*
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mRNA from alignment at H-paniculata_contig19165:1018..3795+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19165.4812.1 ID=mRNA_H-paniculata_contig19165.4812.1|Name=mRNA_H-paniculata_contig19165.4812.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2778bp|location=Sequence derived from alignment at H-paniculata_contig19165:1018..3795+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCTGTTCAGCGTGTGAACGGGGGAAGGCATCGAAGCAACCTGTAAAGAA GTTTCGGGAAGAGTATACAACGGAGCGACTAGAGCTAGTACATACTGACA TCACAGGACCGATAGACGAAAGCTTTCGAGGGACTCCGTTTCGCCATTAT CTTCGCGGACGATTACAGTCGAATGCGTAAGGTCTAGACCCTGAAACACA AATCAGAGGCATTATGGACTCTGAAACAGTTCGAGCGGGACATCGCGAAG GCAAAAGGGCTACAAATACAATGCCTTCAGTCAGATCAGAGAGGAGAGTT AAGAGGAGAAGCATTCCGACAATTTTGTGCGGGAAATGGCATCAAGCAAG AATTTTCTGCTGCCTACACGCCGCAGCAAAACGGTGTGGTGGACCGCAGC TGGCGTAGCGTTTTCGAGATGACCCGAAGTAAGATGATCACCGCCAACAT GGGTCGCAGGTATTGGGCGAAGGCGGCGCGCGCGGCTGTGTACTGCTTAA ATCGCGCTCCGACGCGACCGCACAACGGAGGAACGCCGAATGAGGTATGG CACAACACGACACCAAAGCTTAAACACCTTCGTGTCTTCGGCTGCATGGC GTACGTGATGTTCCAGTCGCAGCAGAGACAAAAACTTGATGACCAAGCGT GGGTTGGGGTGTTTCTGGGGTACAACGAGGACAGCCCGAGTTATCGCATA AATGACCCGGAAACAATAGCGTCCAGTTGAGCAGGAACGTGAGATTTGAC GAAGAGGATTTCGTAACCGGTCATCGCGGACAGCTGGAGCACGACGAGAC CCGAGACATGAAAGGCCTGTTTCAGCACCGTCGGTCACACCTCACGCGAT ATTGCGCCCGAGCCGAACGAGGAGATGTGACCAACACGGAAAACCCAACG TCAGCGTCGTCTAGCGCCAGCGCCAACCCGTACGGCGCCTTGAGCGATGA CGATAATCATGAAGACAATAATGACTCGGAGGTGAACGATGCTGAACCAG AAGCTGAAGACACATCGTCGGTGGAAACATGCGCAATCATATCTCGAGAG GAGACCAGGACAGAGTCAGGGACGGAGGAGCGGCGACCGCGAGATCGATC ACCAACACTGACACGGGCGAGAGCGAGGGAAAACTGCGAAGAGGGTGCAG GCGCTGCCGCGCGCGTGGCTAAAGTGGAAAACACCAGCAACCCTATCTGT GGAGGAGCCGAAATCTACGGCAGAAGCATTGAAGAGCCCAGAGGCAGGCA AATGGCGCGCGGCAGTGGAGGAGGAATGGAGGGCGTTGGTCAAACATGGG ATGTGGGATAGCGAGGACCCGGGGAGGTTACTGGTAGGGCGGAAGGCGAT CTGTACCAAACGAATTTTCAAGCCCACACTGAAGTAGGGCGGCAGCGTGG CACGTTACAAAGCGCGACTAGTAGCTCAAGGTTTATCACGCGTGGAGGGT GAAGCTTTCTTTGAAACCGGTGCCTCCGTAGCTCGCATGTCGATATTTTG TACTGTTTTCAGCCTGGCCGCCAAACATGATTTCGAACTAGAAGGCATGG ACGTAGATGTGGCATATTTCAATGCCCCCGTAGAAGAAGAACTGTTTGTT AAGCTACCGCCCGCGTTTTCCCCTTTCTCTCGAGATATAACGTTTGTGCG CCGCCTACATAAAAGCCTGTATGGCCTCAAGCAGAGCGGCCGAAACTGGA GTAACACTCTTGACGATTTTCTTGTTGGGATAGGACTAGTGTTCCACTAC CGACCTATGCTTGTACTTCTCTCGCGACGAAGGAGGAGAGACAGAAATTC CCGTTGCCGTCTATGTCGACGACCTGGTCATCGCTGAACATCGTGAGAAA GTAGACGAGTTCAAGCACAACATAAGTCGGCGGTTTAGGATGAAAGACTT GGGCTGCCTCTCGCGCGTGTTGAGAATAGAAGTACGACGAGACCGCCCCG ATGGTACCATATCAATATCCCAAGGTTGCTACATCTGCGAGGTACTGAAA AGATACAGTTTTGACGGGTGTCGCGGCATGCCCACCCCTGTAGAGGGAAA AGTGAAGATTTTGGAACCCGAGTCGGCCGACAAGCCCCCCGAACCGAAAC CACTTGGGGCTGTACTGTCGGACAAAAGCGCAGGAATACAAGAAAACAGC AGTGGGAGAAATGGCATTTCAATTGAATACAGAGGCATGGTAGGACCACT CATGTATGCCTCGATAGGAACTAGACCTGATATAGCATACGCGGTACAAC AAGCAGCACGTTTTATGGAGGACCCGTGTCGGGAAGATATCAGTACATGC AAGCGCATTTTCGTTATCTCACTAGTGTTCCTGACCTTGGCATTATGTTC GGCGGCAAGAGTAATGGTCACGATCTGGAAGGATTCGTTGATGCCGATTG GGCGGAAGATGTCGGGTACCGAAAGTCCACAACAGGATACATTTTCAAGC TGCACGGTGGTGCGATAAGTTGGTGCTCTAGCAAGCAACAGTTAGAGGCA GAGTACGTTGATGCAGGAGAAGCGGGAAAGGAGACGATATATCTTAGGGA TTTACTAGGATCGATAGGTTTCGGATGCAGGAGGATCACAACATATTAGA GGACGAGTCAGCTATCAATCTCAGTATGGGATCTGGCGCACACTGCAGGA CAAAGCACATCGGAGTGAACTGGCACGGAATTCGAGAGTGGCTTCGGGAA GGAATTTTGGCGCTGAAATACGTGCAGACCGGCGACCAACTTGCTGACAG TCTAACGAAAGCACTGAGCACACTATAG
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Coding sequence (CDS) from alignment at H-paniculata_contig19165:1018..3795+

>mRNA_H-paniculata_contig19165.4812.1 ID=mRNA_H-paniculata_contig19165.4812.1|Name=mRNA_H-paniculata_contig19165.4812.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=834bp|location=Sequence derived from alignment at H-paniculata_contig19165:1018..3795+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAAGCGCATTTTCGTTATCTCACTAGTGTTCCTGACCTTGGCATTAT
GTTCGGCGGCAAGAGTAATGGTCACGATCTGGAAGGATTCGTTGATGCCG
ATTGGGCGGAAGATGTCGGGTACCGAAAGTCCACAACAGGATACATTTTC
AAGCTGCACGGTGGTGCGATAAGTTGGTGCTCTAGCAAGCAACAGTTAGA
GGCAGAATGCAAGCGCATTTTCGTTATCTCACTAGTGTTCCTGACCTTGG
CATTATGTTCGGCGGCAAGAGTAATGGTCACGATCTGGAAGGATTCGTTG
ATGCCGATTGGGCGGAAGATGTCGGGTACCGAAAGTCCACAACAGGATAC
ATTTTCAAGCTGCACGGTGGTGCGATAAGTTGGTGCTCTAGCAAGCAACA
GTTAGAGGCAGAGTTTCGGATGCAGGAGGATCACAACATATTAGAGGACG
AGTCAGCTATCAATCTCAGTATGGGATCTGGCGCACACTGCAGGACAAAG
CACATCGGAGTGAACTGGCACGGAATTCGAGAGTGGCTTCGGGAAGGAAT
TTTGGCGCTGAAATACGTGCAGACCGGCGACCAACTTGCTGACAGTCTAA
CGAAAGCACTGAGCACACTATAGGTTTCGGATGCAGGAGGATCACAACAT
ATTAGAGGACGAGTCAGCTATCAATCTCAGTATGGGATCTGGCGCACACT
GCAGGACAAAGCACATCGGAGTGAACTGGCACGGAATTCGAGAGTGGCTT
CGGGAAGGAATTTTGGCGCTGAAATACGTGCAGACCGGCGACCAACTTGC
TGACAGTCTAACGAAAGCACTGAGCACACTATAG
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