mRNA_H-paniculata_contig19162.4810.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19162.4810.1
Unique NamemRNA_H-paniculata_contig19162.4810.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig19162.4810.1 vs. uniprot
Match: A0A0C9VSW1_SPHS4 (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Sphaerobolus stellatus (strain SS14) TaxID=990650 RepID=A0A0C9VSW1_SPHS4)

HSP 1 Score: 247 bits (631), Expect = 6.940e-71
Identity = 147/415 (35.42%), Postives = 226/415 (54.46%), Query Frame = 2
Query:  167 ETSAPVARMSTLRIVFSLAAEHDFKFEAMDADAAYLNAPVEEELFVTLPPEFSPFSRDIPLVRRLRKSLYSLKQSGRNRNNTLDDFLLGIGIQRSTTIPCLYFSRDEGGETDILVSVYVDNLII-A*RREKVHEFKDEISGRFRMK---------GLEVRRDRPNGTINISQGSYTRKVLKRYGSDECRGVPPPVEGKVKISAPERRSGNSTEYRGMV*SLMYTPTGTRPDLEYVVHQVARCMEDPYREDFSTCKRMFHYLSTVPDVGIMFGGKSNDHGLEEFVDADWAEDIED*KSTTPHVFKLNSGAINLCSSKQQLVTSSSTEADYITAGEAGKETVYLRELLGSIGFGCKGTTTFV*DNNSAITLIKGSGAHCRTKHIGVRWHGIRLWIWEGVLALKYVQTGDQLADIITK 1381
            E  APV + +++R + +L  E D +   MD   A+LN  ++EE+++ LPP F    R   ++ +L+K LY LKQ+ R     L      +G +R  +   ++   D G    ++V+VYVD+L+I +   E V + K ++ G+F M          G+E+ RDRP+ T++ISQ +Y  ++L+R+G  +C+  P P+E  V +        +S  Y+  V SLMY   GT PD+ + V  +++    P  E     KR+  Y+    D+G++F G  N   +E F+DADWA+D  +  S T +V  L    I+  S KQ     SSTEA+Y+ A  A KE ++LR  +  +GF     T    DN SAITL+K S  H RTKHI VR+H IR  + +  + L Y+ T DQ+AD +TK
Sbjct:  287 EMFAPVVKFTSIRTLLALTTELDLEIHQMDVKTAFLNRDLKEEIYMNLPPGF----RKPGVIWKLKKGLYGLKQASREWYKKLCTEFESMGFRRCNSNHAVFIKDDNG--IRVVVAVYVDDLLIFSSSIEAVKKVKKDLKGKFEMTDLGEAHWILGMEITRDRPSHTLSISQKAYFAEILERFGMSDCKPAPTPMEVGVSLRKLSEAEVDSQHYQSAVGSLMYGMIGTHPDVAHSVGVLSQHCATPGEEHEKGNKRVLRYIKGTTDLGLVFIGSGNTK-IEVFIDADWAQDKNNRHSLTGYVCTLAGATISWSSKKQSSTAQSSTEAEYMAATHAAKEALWLRMFMRELGFEQDSPTPLYVDNQSAITLVKNSEFHSRTKHINVRYHFIRENVEDEQIELVYIPTEDQVADALTK 694          
BLAST of mRNA_H-paniculata_contig19162.4810.1 vs. uniprot
Match: W7TJ26_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJ26_9STRA)

HSP 1 Score: 244 bits (624), Expect = 6.290e-70
Identity = 153/421 (36.34%), Postives = 234/421 (55.58%), Query Frame = 2
Query:  170 TSAPVARMSTLRIVFSLAAEHDFKFEAMDADAAYLNAPVEEELFVTLPPEFSPFSRDI-PLVRRLRKSLYSLKQSGRNRNNTLDDFLLGIGIQRSTTIPCLYFSRDEGGETDILVSVYVDNLIIA*R-REKVHEFKDEISGRFRMK---------GLEVRRDRPNGTINISQGSYTRKVLKRYGSDECRGVPPPVEGKV-KISAPERRSGNSTEYRGMV*SLMYTPTGTRPDLEYVVHQVARCMEDPYREDFSTCKRMFHYLSTVPDVGIMFGGKSN-DHGLEEFVDADWAEDIED*KSTTPHVFKLNSG----AINLCSSKQQLVTSSSTEADYITAGEAGKETVYLRELLGSIGFGCKGTTTFV*DNNSAITLIKGSGAHCRTKHIGVRWHGIRLWIWEGVLALKYVQTGDQLADIITK 1381
            T APVA M+T+R+V +LA   D + + MD D AYL + +EE++++  PP +  +  +   LV RLRKSLY LKQSGRN +  +D +  G G+  S   PCLY      GE  ++V +YVD+LII    R    +FK +IS  F MK         G+ ++R+R N T+ ISQ  Y   +L ++G  +C+ V  P+EG + K+   + +  N  EY  +V SL+Y    TRPD+ + V  + + ++   +E +   KR+  YL    DVG+ + G S     L  + DAD+A D ++ +ST+ + F L+ G     I+  + +Q +V  SS E++ I+A  A +  VY+R+LL  +GF     T  + DN + I +      H RTKHI VR+H +R  +    + L Y+ T  QLADI+TK
Sbjct:  277 TYAPVASMTTIRLVLALACILDLELDNMDVDTAYLQSDLEEKVYIKQPPGYEKYGPNGGELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGLHPSYADPCLYVKFASSGEILVIV-LYVDDLIIGSNSRTMTDKFKQDISREFSMKDLKELDWILGMGIKRNRENRTMEISQTGYIGMMLNKFGMADCKSVLTPMEGTLTKMDGKDVKPDN--EYMKLVGSLLYAALVTRPDIAFAVQSLGKHLQGSNKEHWIAAKRVLRYLKGTRDVGLKYTGNSTGSFTLVGYADADYAGDKDNRRSTSGYTFTLSHGDDVNTIDWKAKQQDVVALSSAESELISACSATQNAVYIRQLLMDLGFKQDEPTVIMEDNQACIAMGNNPITHKRTKHIDVRYHFVREKVESKEVELVYIPTQHQLADILTK 694          
BLAST of mRNA_H-paniculata_contig19162.4810.1 vs. uniprot
Match: W7TIM1_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIM1_9STRA)

HSP 1 Score: 241 bits (615), Expect = 4.490e-67
Identity = 152/421 (36.10%), Postives = 233/421 (55.34%), Query Frame = 2
Query:  170 TSAPVARMSTLRIVFSLAAEHDFKFEAMDADAAYLNAPVEEELFVTLPPEFSPFSRD-IPLVRRLRKSLYSLKQSGRNRNNTLDDFLLGIGIQRSTTIPCLYFSRDEGGETDILVSVYVDNLIIA*R-REKVHEFKDEISGRFRMK---------GLEVRRDRPNGTINISQGSYTRKVLKRYGSDECRGVPPPVEGKV-KISAPERRSGNSTEYRGMV*SLMYTPTGTRPDLEYVVHQVARCMEDPYREDFSTCKRMFHYLSTVPDVGIMF-GGKSNDHGLEEFVDADWAEDIED*KSTTPHVFKLNSG----AINLCSSKQQLVTSSSTEADYITAGEAGKETVYLRELLGSIGFGCKGTTTFV*DNNSAITLIKGSGAHCRTKHIGVRWHGIRLWIWEGVLALKYVQTGDQLADIITK 1381
            T APVA ++T+R++ ++A   D + + MD + AYL + +EE+++V  P  +  +  +   LV RLRKSLY LKQSGRN +  +D +  G G   S+  PCLY      GE  ++V +YVD+LII    RE V +FK  IS  F MK         G+ ++R+R    + ISQ +Y   VL ++G  +CR V  P+EG + K+   + +  N  EY  +V SL+Y    TRPD+ + V  + + ++    E +   KR+  YL    DVGI + G  +    L  F DAD+A D ++ +ST+ + F L+ G     I+  + +Q++V  SS E++ I+A  A +  VY+R+LL  +GF     T  V DN + I +      H +TKHI VR+H +R  +    + L Y+ T  QLADI+TK
Sbjct:  286 TYAPVASITTIRLILAIACILDLELDNMDVETAYLQSDLEEKVYVKQPIGYEQYGLNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEMLVIV-LYVDDLIITSNSREMVDKFKQAISREFSMKDLKELDWILGMAIKRNREKRVMEISQTAYIDMVLNKFGMADCRPVLTPMEGTLTKMDGKDAKPDN--EYMKLVGSLLYAALVTRPDIAFAVQSLGKHLQGSNEEHWIAAKRVLRYLKGTRDVGIRYTGNTTGSFTLVGFADADYAGDKDNRRSTSGYAFTLSHGDDINTIDWKAKQQEVVALSSAESELISACSATQSAVYIRQLLTDLGFKQDEPTVIVEDNQACIAMGNNPITHKKTKHIDVRYHFVREKVESKEVELVYIPTQHQLADILTK 703          
BLAST of mRNA_H-paniculata_contig19162.4810.1 vs. uniprot
Match: A0A5S6QJX2_TRIMR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6QJX2_TRIMR)

HSP 1 Score: 231 bits (589), Expect = 6.830e-67
Identity = 149/417 (35.73%), Postives = 222/417 (53.24%), Query Frame = 2
Query:  167 ETSAPVARMSTLRIVFSLAAEHDFKFEAMDADAAYLNAPVEEELFVTLPPEFSPFSRDIPLVRRLRKSLYSLKQSGRNRNNTLDDFLLGIGIQRSTTIPCLYFSRDEGGETDILVSVYVDNLIIA*RR-EKVHEFKDEISGRFRMK---------GLEVRRDRPNGTINISQGSYTRKVLKRYGSDECRGVPPPVEGKVKISAPER--RSGNSTEYRGMV*SLMYTPTGTRPDLEYVVHQVARCMEDPYREDFSTCKRMFHYLSTVPDVGIMFGGKSNDHGLEEFVDADWAEDIED*KSTTPHVFKLNSGAINLCSSKQQLVTSSSTEADYITAGEAGKETVYLRELLGSIGFGCKGTTTFV*DNNSAITLIKGSGAHCRTKHIGVRWHGIRLWIWEGVLALKYVQTGDQLADIITK 1381
            +T APV R  T+RI+F++ A  +     +D   AYLN  ++EELF+  PP FS  +     V RLR+SLY LKQS R  N    D L  +G + +   PCL FSR E   T   V +YVD+L+IA    E   +   +++  F +K         G++V R+  +G+  + Q +  R +LK +G  + + V  P+E     S  E   +  ++ EYR  + SL+Y  T TRPD+ + V Q+ RCME P + D+   KR+  YL+  P   + F    +   L  FVDADWA D  D KST+ + FK+ +  +   S KQ  V  SSTEA+YI A EA ++ +++R++L  IG      T    DN   I + +      RTKHI +R+H +R     G++AL Y  + +  AD++TK
Sbjct:   59 KTFAPVVRHETVRILFAVVAMKNMHVRHVDVKTAYLNGKLDEELFLEPPPGFSQPTTG-GKVLRLRRSLYGLKQSARVWNQVATDALQKLGFRPNRADPCL-FSRSEKNNTMSYVLLYVDDLLIAGSSPELTCDVGKQLNSYFEIKDLGEVRQYLGMQVEREE-DGSFLLYQAAKVRHLLKEHGLLDAKPVATPMEANFLSSTEEESPKLPDNAEYRKAIGSLLYLATATRPDISFAVGQLCRCMEHPTQRDWKAVKRVMRYLAGSPYRKLRFSANGSIK-LSGFVDADWAGDQADRKSTSGYAFKVGTSTVAWSSRKQSFVALSSTEAEYIAASEACRDLLWIRQVLEDIGIEQVEPTIVYEDNQGCIKMAQSERHTRRTKHIDIRYHQLRELQESGIIALTYCPSNEMPADMLTK 471          
BLAST of mRNA_H-paniculata_contig19162.4810.1 vs. uniprot
Match: A0A0V0IN51_SOLCH (Putative ovule protein n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0IN51_SOLCH)

HSP 1 Score: 230 bits (586), Expect = 2.460e-66
Identity = 147/417 (35.25%), Postives = 228/417 (54.68%), Query Frame = 2
Query:  167 ETSAPVARMSTLRIVFSLAAEHDFKFEAMDADAAYLNAPVEEELFVTLPPEFSPFSRDIPLVRRLRKSLYSLKQSGRNRNNTLDDFLLGIGIQRSTTIPCLYFSRDEGGETDILVSVYVDNLIIA*-RREKVHEFKDEISGRFRMK---------GLEVRRDRPNGTINISQGSYTRKVLKRYGSDECRGVPPPVEGKVKISAPERR-SGNSTEYRGMV*SLMYTPTGTRPDLEYVVHQVARCMEDPYREDFSTCKRMFHYLSTVPDVGIMFGGKSNDHG-LEEFVDADWAEDIED*KSTTPHVFKLNSGAINLCSSKQQLVTSSSTEADYITAGEAGKETVYLRELLGSIGFGCKGTTTFV*DNNSAITLIKGSGAHCRTKHIGVRWHGIRLWIWEGVLALKYVQTGDQLADIITK 1381
            +T APVAR  T+R++F+LAA+ ++K   +D  +A+LN  ++EE++V  P  F     +   V RL K+LY LKQ+ R   + +DD L+  G +RS     LY  + +GG+   +VS+YVD+L++    +  V++F  E+  +F M          G+E+ +      I ISQ  Y   +LKR+  + C+ VP P+    KIS  E     + T YR ++ SL+Y  T TRPDL +    ++R M+ P +      KR   Y+    D GI F  K  + G L  + D+DWA  ++D KST+ + F L SG  +  S KQ++V  SS EA+YI A  A  + ++LR++L  +       T    DN SAI++ K    H R+KHI V++H IR    +G + L +  +  Q+ADI+TK
Sbjct:   38 DTFAPVARHDTIRLLFALAAQSNWKLYHLDVKSAFLNGLLQEEIYVDQPEGFQVAGME-DKVYRLHKALYGLKQAPRAWYSKIDDHLIHCGFKRSENEATLYVKKAKGGDV-FVVSLYVDDLLVTGSNKAMVNQFMQEMETKFEMSDLGEMSYFLGMEIHQ--VTAGIFISQRKYAWDILKRFKMERCKSVPTPLVHNEKISKFEGGYRADPTVYRSLIGSLLYL-TATRPDLMFTTSLLSRFMQAPSQVHLGVAKRTLRYIKGTADYGIWF--KREEQGQLMGYSDSDWAGSVDDMKSTSGYAFTLGSGMFSWNSKKQEVVAQSSAEAEYIAAAGATNQALWLRKILRDLEQNDIEATVIKVDNKSAISMAKNPVQHGRSKHINVKFHAIRQAKKDGEVQLVHCSSDQQIADIMTK 447          
BLAST of mRNA_H-paniculata_contig19162.4810.1 vs. uniprot
Match: A0A5S6QN85_TRIMR (Integrase catalytic domain-containing protein n=2 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6QN85_TRIMR)

HSP 1 Score: 237 bits (604), Expect = 4.550e-66
Identity = 151/417 (36.21%), Postives = 225/417 (53.96%), Query Frame = 2
Query:  167 ETSAPVARMSTLRIVFSLAAEHDFKFEAMDADAAYLNAPVEEELFVTLPPEFSPFSRDIPLVRRLRKSLYSLKQSGRNRNNTLDDFLLGIGIQRSTTIPCLYFSRDEGGETDILVSVYVDNLIIA*RR-EKVHEFKDEISGRFRMK---------GLEVRRDRPNGTINISQGSYTRKVLKRYGSDECRGVPPPVEGKVKISAPER--RSGNSTEYRGMV*SLMYTPTGTRPDLEYVVHQVARCMEDPYREDFSTCKRMFHYLSTVPDVGIMFGGKSNDHGLEEFVDADWAEDIED*KSTTPHVFKLNSGAINLCSSKQQLVTSSSTEADYITAGEAGKETVYLRELLGSIGFGCKGTTTFV*DNNSAITLIKGSGAHCRTKHIGVRWHGIRLWIWEGVLALKYVQTGDQLADIITK 1381
            ET APV R  T+RI+F++AA  +     +D   AYLN  ++EELF+  PP FS  + D   V RLR+SLY LKQS R  N    D L  +G + +   PCL FSR+E   T   V +YVD+L+IA    E   +   +++  F +K         G++V R+  +G+  + Q +  R +LK +G  + + V  P+E     S  E   +  ++ EYR  + SL+Y  T TRPD+ + V Q+ RCME P + D+   KR+  YL+  P   + F    +   L  FVDADWA D  D KST+ + FK+ +  +   S KQ  V  SSTEA+Y+ A EA ++ +++R++L  IG      T    DN   I + +      RTKHI +R+H +R     G++AL Y  + +  AD++TK
Sbjct:  439 ETFAPVVRHETVRILFAVAAMKNMHVRHVDVKTAYLNGKLDEELFLEPPPGFSQPTTD-GKVLRLRRSLYGLKQSARVWNQVATDALQKLGFRPNRADPCL-FSRNEKNNTMSYVLLYVDDLLIAGSSPELTCDVGKQLNSYFEIKDLGEVRQYLGMQVEREE-DGSFLLYQAAKVRHLLKEHGLLDAKPVATPMEANFLSSTEEESPKLPDNAEYRKAIGSLLYLATATRPDISFAVGQLCRCMEHPTQRDWKAVKRVMRYLAGSPYRKLRFSANGSIK-LSGFVDADWAGDHADRKSTSGYAFKVGTSTVAWSSRKQSFVALSSTEAEYVAASEACRDLLWIRQVLEDIGIKQVEPTIVYEDNQGCIKMAQSERHTRRTKHIDIRYHQLRELQESGIIALTYCPSNEMPADMLTK 851          
BLAST of mRNA_H-paniculata_contig19162.4810.1 vs. uniprot
Match: W7T174_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T174_9STRA)

HSP 1 Score: 238 bits (608), Expect = 5.060e-66
Identity = 151/422 (35.78%), Postives = 232/422 (54.98%), Query Frame = 2
Query:  167 ETSAPVARMSTLRIVFSLAAEHDFKFEAMDADAAYLNAPVEEELFVTLPPEFSPFSRDI-PLVRRLRKSLYSLKQSGRNRNNTLDDFLLGIGIQRSTTIPCLYFSRDEGGETDILVSVYVDNLIIA*R-REKVHEFKDEISGRFRMK---------GLEVRRDRPNGTINISQGSYTRKVLKRYGSDECRGVPPPVEGKV-KISAPERRSGNSTEYRGMV*SLMYTPTGTRPDLEYVVHQVARCMEDPYREDFSTCKRMFHYLSTVPDVGIMF-GGKSNDHGLEEFVDADWAEDIED*KSTTPHVFKLNSG----AINLCSSKQQLVTSSSTEADYITAGEAGKETVYLRELLGSIGFGCKGTTTFV*DNNSAITLIKGSGAHCRTKHIGVRWHGIRLWIWEGVLALKYVQTGDQLADIITK 1381
            +T APVA M+T+R+V +LA   D + + MD D AYL + +EE++++  P  +  +  +   LV RLRKSLY LKQSGRN +  +D +  G G   S+  PCLY      GE  ++V +YVD+LIIA   R    +FK  IS  F MK         G+ ++R+R    + ISQ  Y   +L ++G  +C+ V  P+EG + K+   + +    +EY  +V SL+Y    TRPD+ + V  + + ++    E +   KR+  YL    DVGI + G  +    L  F DAD+A D ++ +ST+ + F L+ G     I+  + +Q++V  SS E++ I+A  A +  VY+R+LL  +GF     T  + DN + I +      H RTKHI VR+H +R  +    + L Y+ T  QLADI+TK
Sbjct:  574 QTYAPVASMTTIRLVLALACILDLELDNMDVDTAYLQSDLEEKVYIKQPHGYEKYGPNGGELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEM-LVVVLYVDDLIIASNSRTMADKFKQAISREFSMKDLKELDWILGMAIKRNREKRIMEISQTGYIDMMLNKFGMTDCKPVLTPMEGTLTKMDGKDVKP--DSEYMKLVGSLLYAALVTRPDIAFAVQSLGKHLQGSNEEHWIAAKRVLRYLKGTRDVGIRYTGNTTGSFTLVGFADADYAGDKDNRRSTSGYAFTLSHGDDINTIDWKAKQQEVVALSSAESELISACSATQSAVYIRQLLTDLGFKQDEPTVIMEDNQACIAMGNNPITHKRTKHIDVRYHFVREKVESKEVELVYIPTQHQLADILTK 992          
BLAST of mRNA_H-paniculata_contig19162.4810.1 vs. uniprot
Match: A0A1M2VSW8_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2VSW8_TRAPU)

HSP 1 Score: 227 bits (579), Expect = 6.380e-66
Identity = 138/426 (32.39%), Postives = 235/426 (55.16%), Query Frame = 2
Query:  155 VKIFETSAPVARMSTLRIVFSLAAEHDFKFEAMDADAAYLNAPVEEELFVTLPPEFSPFSRDIPLVRRLRKSLYSLKQSGRNRNNTLDDFLLGIGIQRSTTIPCLYFSRDEGGETDILVSVYVDNLIIA*RREKV-HEFKDEISGRFRMK---------GLEVRRDRPNGTINISQGSYTRKVLKRYGSDECRGVPPPVEGKVKIS---APERRSG----NSTEYRGMV*SLMYTPTGTRPDLEYVVHQVARCMEDPYREDFSTCKRMFHYLSTVPDVGIMFGGKSNDHGLEEFVDADWAEDIED*KSTTPHVFKLNSGAINLCSSKQQLVTSSSTEADYITAGEAGKETVYLRELLGSIGFGCKGTTTFV*DNNSAITLIKGSGAHCRTKHIGVRWHGIRLWIWEGVLALKYVQTGDQLADIITK 1381
            V  +ET APVA++++ R++ ++AA + +  E  D ++AYLN+ ++EE+++  PP+   F+     V +L K+LY LKQ GR    TL   L  +G  R+     ++F RD  G   ++++++VD+ +I     ++  E+K +++ ++++          G++V RD    T+ +SQ +Y   ++ R+  D+ + +  P++   ++S    PE  +         Y+  + SLMY   GTRPD+ + V  +A+  ++P    +   KR+F YL     + +++GG     GLE +VDAD A   E  ++ T +VF ++ GAI+  S KQ+LVT S+ E++Y+ A  A KE ++LR L+G +       TT   D+ SAI L      H RTKHI +R+H IR  I  G + L Y  T D  AD++TK
Sbjct:    4 VDYYETFAPVAKLASFRLILAIAARNGWSAETFDFNSAYLNSKLDEEVYLEQPPDHE-FADRRKYVLKLLKALYGLKQGGRKWYETLSAALADLGFTRAEADYGVFFKRD--GTHLVILAIHVDDCLITGSSTRLLAEYKRQLAAKYKLTDLGPVSWLLGIKVSRDLSAHTLALSQHAYIEAIITRFNFDDLKPISTPMDPTSQLSKSQCPESAADVARMRRVPYKEAIGSLMYAAMGTRPDIAFAVSTLAQFSQNPGWVHWEAVKRVFRYLLGTKTLSLIYGG--GQRGLEGYVDADGASQ-EHRRAITGYVFLVDGGAISWSSKKQELVTLSTAESEYVAATHAAKEAIWLRRLIGEVFRPLSEPTTLHSDSQSAIALTVDGSYHARTKHIDIRYHFIRYSIDAGSIRLLYCPTADMTADVLTK 423          
BLAST of mRNA_H-paniculata_contig19162.4810.1 vs. uniprot
Match: A0A4Y9ZVS1_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZVS1_9AGAM)

HSP 1 Score: 229 bits (584), Expect = 1.570e-65
Identity = 146/422 (34.60%), Postives = 222/422 (52.61%), Query Frame = 2
Query:  167 ETSAPVARMSTLRIVFSLAAEHDFKFEAMDADAAYLNAPVEEELFVTLPPEFSPFSRDIPLVRRLRKSLYSLKQSGRNRNNTLDDFLLGIGIQRSTTIPCLYFSRDEGGETDILVSVYVDNLIIA*RR-EKVHEFKDEISGRFRMK---------GLEVRRDRPNGTINISQGSYTRKVLKRYGSDECRGVPPPVEGKVKISAPERRSG-------NSTEYRGMV*SLMYTPTGTRPDLEYVVHQVARCMEDPYREDFSTCKRMFHYLSTVPDVGIMFGGKSNDHGLEEFVDADWAEDIED*KSTTPHVFKLNSGAINLCSSKQQLVTSSSTEADYITAGEAGKETVYLRELLGSIGFGCKGTTTFV*DNNSAITLIKGSGAHCRTKHIGVRWHGIRLWIWEGVLALKYVQTGDQLADIITK 1381
            +T APVA++S++RI+ +LAA  D++   MD   AYLN  +EEE+F+  PP F P       V  L K +Y LKQ+GR     L    L +G  RS+    ++F     GE  I V+V VD+L IA    +++   K  +  +F M          GLE++RDR   TI++ Q +Y   +L R+   + + +   ++    ++  +  S         +  YR  + SLMY   GTRPD+ Y V  +++ M++P    +   KR+  YL    +  + +GG  N +G+E F DADW    +  +S + +VF ++ GA++  S KQ +V  SSTEA+Y+    A KE ++ R  LG I       TT   DN SAITL K +  H RTKHI +R+H IR  +  G + + Y  T D  AD++TK
Sbjct:  112 DTFAPVAKLSSIRILAALAARFDWELHQMDVKNAYLNGDLEEEIFMKQPPGF-PTPGQEQKVCHLFKPIYGLKQAGRRWYKKLCAAFLDMGFARSSVDHSVFFRHGPNGEIAI-VAVSVDDLAIAANSVDEMSHIKSALKLKFEMTDLGEIHWLLGLEIKRDRRGRTISMLQRAYIDTILSRFNLQDAKSLTTAIDPSFSLTTDQSPSTPQQYDDMRNILYREAIGSLMYAAIGTRPDVSYAVTALSQFMQNPGHPHWEAAKRVMRYLKGTKEEWLTYGG-DNANGMEGFSDADWGSS-DHRRSISGYVFLIDGGAVSWSSKKQPIVALSSTEAEYVAMTHAAKEVLWTRAFLGEIISPFDKPTTLYADNQSAITLAKDNLYHARTKHIAIRFHFIRDIVERGEVDIVYCPTADMAADVLTK 529          
BLAST of mRNA_H-paniculata_contig19162.4810.1 vs. uniprot
Match: A0A8D8HJI9_CULPI (Copia protein n=1 Tax=Culex pipiens TaxID=7175 RepID=A0A8D8HJI9_CULPI)

HSP 1 Score: 228 bits (581), Expect = 1.820e-65
Identity = 140/415 (33.73%), Postives = 220/415 (53.01%), Query Frame = 2
Query:  167 ETSAPVARMSTLRIVFSLAAEHDFKFEAMDADAAYLNAPVEEELFVTLPPEFSPFSRDIPLVRRLRKSLYSLKQSGRNRNNTLDDFLLGIGIQRSTTIPCLYFSRDEGGETDILVSVYVDNLIIA*RREK-VHEFKDEISGRFRMK---------GLEVRRDRPNGTINISQGSYTRKVLKRYGSDECRGVPPPVEGKVKISAPERRSGNSTEYRGMV*SLMYTPTGTRPDLEYVVHQVARCMEDPYREDFSTCKRMFHYLSTVPDVGIMFGGKSNDHGLEEFVDADWAEDIED*KSTTPHVFKLNSGAINLCSSKQQLVTSSSTEADYITAGEAGKETVYLRELLGSIGFGCKGTTTFV*DNNSAITLIKGSGAHCRTKHIGVRWHGIRLWIWEGVLALKYVQTGDQLADIITK 1381
            ET +PVA+M+TLRI+ +LA    +    MD   A+LN  ++E++++  PP F    R   LV +L +S+Y LKQS RN N   DD++  +G +RS    CLY  + +G  T +L+  YVD+++IA    K +   K ++S  F MK         GL + RDR  G++ I Q +YT  VLKR+G + C+  P P++ ++K+   + +      Y+ +V  LMY    +RPD+   V+  A        E +   KR+  YL    D  +++    +  G+E F DADW  D  D KS +  V KL+   +N  + KQ  V  SSTEA+ ++  +A  E +++  LL SI +      T   DN   I++        R KHI V++  ++  I  G L L+Y+ T +Q+AD++TK
Sbjct:   85 ETYSPVAKMATLRILLALANHEGWHLHQMDVKCAFLNGSLDEDIYMCQPPGFE---RGKDLVCKLNRSIYGLKQSSRNWNRRFDDYVTKLGFKRSQHDLCLYHWKADGVVTYMLI--YVDDILIAGNDLKAIRALKGKLSTEFEMKDMEEAKIFLGLRIDRDRKAGSMTIDQKAYTLGVLKRFGMENCKSSPVPMQPRLKLERGDPKELTEKPYKELVGCLMYLTVTSRPDICPAVNYFASFQSSATEEHWVHLKRVLRYLQGTLDYKLIYQRMDSAVGVEAFADADWGNDPTDRKSVSGFVLKLHGQTVNWSTRKQTSVALSSTEAELMSLCQASCEVMWMLNLLASIEYEVPHPVTVYEDNQPCISVTADPRKLKRMKHIDVQYRFVKELIDNGKLRLEYLSTEEQVADLMTK 494          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19162.4810.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0C9VSW1_SPHS46.940e-7135.42Reverse transcriptase Ty1/copia-type domain-contai... [more]
W7TJ26_9STRA6.290e-7036.34Gag-pol polyprotein n=2 Tax=Nannochloropsis gadita... [more]
W7TIM1_9STRA4.490e-6736.10Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]
A0A5S6QJX2_TRIMR6.830e-6735.73Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A0V0IN51_SOLCH2.460e-6635.25Putative ovule protein n=1 Tax=Solanum chacoense T... [more]
A0A5S6QN85_TRIMR4.550e-6636.21Integrase catalytic domain-containing protein n=2 ... [more]
W7T174_9STRA5.060e-6635.78Gag-pol polyprotein n=2 Tax=Nannochloropsis gadita... [more]
A0A1M2VSW8_TRAPU6.380e-6632.39Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y9ZVS1_9AGAM1.570e-6534.60Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A8D8HJI9_CULPI1.820e-6533.73Copia protein n=1 Tax=Culex pipiens TaxID=7175 Rep... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19162contigH-paniculata_contig19162:1689..3177 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.0
Seed ortholog evalue6.2e-15
Seed eggNOG ortholog164328.Phyra87571
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Domain of unknown function (DUF4219)
EggNOG OGs3QI1B@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons3
Model size1381
Cds size354
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19162.4810.1prot_H-paniculata_contig19162.4810.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19162 1879..2232 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929465.0950115-UTR-H-paniculata_contig19162:1688..18781622929465.0950115-UTR-H-paniculata_contig19162:1688..1878Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19162 1689..1878 +
1691480873.184605-UTR-H-paniculata_contig19162:1688..18781691480873.184605-UTR-H-paniculata_contig19162:1688..1878Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19162 1689..1878 +
1622929465.142889-UTR-H-paniculata_contig19162:2232..22961622929465.142889-UTR-H-paniculata_contig19162:2232..2296Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19162 2233..2296 +
1691480873.2050622-UTR-H-paniculata_contig19162:2232..22961691480873.2050622-UTR-H-paniculata_contig19162:2232..2296Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19162 2233..2296 +
1622929465.1624131-UTR-H-paniculata_contig19162:2323..24651622929465.1624131-UTR-H-paniculata_contig19162:2323..2465Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19162 2324..2465 +
1691480873.2179708-UTR-H-paniculata_contig19162:2323..24651691480873.2179708-UTR-H-paniculata_contig19162:2323..2465Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19162 2324..2465 +
1622929465.189777-UTR-H-paniculata_contig19162:2546..31771622929465.189777-UTR-H-paniculata_contig19162:2546..3177Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19162 2547..3177 +
1691480873.2372017-UTR-H-paniculata_contig19162:2546..31771691480873.2372017-UTR-H-paniculata_contig19162:2546..3177Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19162 2547..3177 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929465.1158576-CDS-H-paniculata_contig19162:1878..22321622929465.1158576-CDS-H-paniculata_contig19162:1878..2232Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19162 1879..2232 +
1691480873.195724-CDS-H-paniculata_contig19162:1878..22321691480873.195724-CDS-H-paniculata_contig19162:1878..2232Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19162 1879..2232 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19162.4810.1

>prot_H-paniculata_contig19162.4810.1 ID=prot_H-paniculata_contig19162.4810.1|Name=mRNA_H-paniculata_contig19162.4810.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=118bp
MSTLRIVFSLAAEHDFKFEAMDADAAYLNAPVEEELFVTLPPEFSPFSRD
IPLVRRLRKSLYSLKQSGRNRNNTLDDFLLGIGIQRSTTIPCLYFSRDEG
GETDILVSVYVDNLIIA*
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mRNA from alignment at H-paniculata_contig19162:1689..3177+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19162.4810.1 ID=mRNA_H-paniculata_contig19162.4810.1|Name=mRNA_H-paniculata_contig19162.4810.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1489bp|location=Sequence derived from alignment at H-paniculata_contig19162:1689..3177+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATGGAACATGGGAAAGCGAAGACCCGGGGAAGTTACTGGCAGGGCGGAA GGCGATTCGTACGAAATGGGTTTTCGAGCAGAACCTGAAGAAGGACGGCA GTGCGGCATGCTACAAAGCGCGACTGTTGGCTCAAGGCTTTTCGCAGGTG GAGGGTGAAGATCTTTGAAACCAGTGCCCCCGTAGCTCGCATGTCCACTT TACGTATCGTTTTTAGCCTGGCCGCCGAGCATGATTTCAAGTTTGAAGCT ATGGACGCAGATGCGGCGTATTTGAACGCCCCCGTAGAAGAAGAGCTGTT TGTTACGCTACCCCCCGAGTTTTCCCCTTTCTCTCGAGACATACCCCTTG TGCGCCGCCTGCGCAAAAGCTTGTACAGCCTCAAGCAGAGCGGCCGAAAC AGGAATAACACTCTCGACGATTTTCTTTTAGGGATAGGAATCCAACGTTC CACTACCATCCCATGCTTGTACTTCTCTCGCGACGAAGGGGGAGAGACAG ACATTCTCGTGTCCGTCTATGTTGACAACCTGATCATTGCTTGACGTCGT GAGAAAGTACATGAGTTCAAGGACGAAATAAGTGGGCGTTTTAGGATGAA AGGCTTGGGTTCTCTCTGATGCGTGTTGGGAATAGAAGTACGACGTGACC GCCCTAATGGTACCATAAACATCTCGCAGGGTAGCTACACCCGCAAGGTG CTAAAAAGATACGGTTCTGACGAGTGTCGAGGGGTACCCCCCCCTGTAGA GGGAAAAGTGAAGATTTCGGCACCCGAGTCGGCCAACAAGCCCTCCGAAC CGAAGTCACTTCGGGCTGCACTGTCGGACATAGGCGCAGGAATACAAGAA AGCAGCAGAAGGAGAAGTGGCAATTCAACCGAATACAGAGGCATGGTATG ATCACTCATGTACACCCCGACAGGAACTAGACCTGATTTAGAGTACGTGG TACACCAAGTAGCACGTTGTATGGAGGACCCATATCGGGAAGACTTCAGT ACATGCAAGCGCATGTTTCATTATCTTAGTACTGTGCCTGACGTCGGCAT CATGTTCGGCGGTAAGAGTAATGATCATGGTCTGGAAGAATTCGTTGATG CCGATTGGGCGGAAGATATCGAGGACTGAAAGTCCACCACACCACACGTT TTCAAGTTGAACAGTGGTGCGATAAATTTGTGCTCTAGCAAGCAACAGTT AGTCACGTCGTCCAGTACAGAGGCAGACTACATTACTGCAGGAGAAGCGG GAAAGGAGACGGTATATCTTAGGGAGTTGCTAGGATCAATAGGTTTCGGA TGCAAGGGGACCACGACATTTGTTTAGGACAACAACTCAGCTATTACTCT CATTAAGGGATCTGGCGCACACTGCAGGACAAAGCACATAGGAGTGCGCT GGCACGGAATTCGATTATGGATTTGGGAAGGAGTTTTGGCGTTGAAATAC GTGCAGACCGGTGACCAACTTGCTGACATTATAACGAAA
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Coding sequence (CDS) from alignment at H-paniculata_contig19162:1689..3177+

>mRNA_H-paniculata_contig19162.4810.1 ID=mRNA_H-paniculata_contig19162.4810.1|Name=mRNA_H-paniculata_contig19162.4810.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=708bp|location=Sequence derived from alignment at H-paniculata_contig19162:1689..3177+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCCACTTTACGTATCGTTTTTAGCCTGGCCGCCGAGCATGATTTCAA
GTTTGAAGCTATGGACGCAGATGCGGCGTATTTGAACGCCCCCGTAGAAG
AAGAGCTGTTTGTTACGCTACCCCCCGAGTTTTCCCCTTTCTCTCGAGAC
ATACCCCTTGTGCGCCGCCTGCGCAAAAGCTTGTACAGCCTCAAGCAGAG
CGGCCGAAACAGGAATAACACTCTCGACGATTTTCTTTTAGGGATAGGAA
TCCAACGTTCCACTACCATCCCATGCTTGTACTTCTCTCGCGACGAAGGG
GGAGAGACAGACATTCTCGTGTCCGTCTATGTTGACAACCTGATCATTGC
TTGAATGTCCACTTTACGTATCGTTTTTAGCCTGGCCGCCGAGCATGATT
TCAAGTTTGAAGCTATGGACGCAGATGCGGCGTATTTGAACGCCCCCGTA
GAAGAAGAGCTGTTTGTTACGCTACCCCCCGAGTTTTCCCCTTTCTCTCG
AGACATACCCCTTGTGCGCCGCCTGCGCAAAAGCTTGTACAGCCTCAAGC
AGAGCGGCCGAAACAGGAATAACACTCTCGACGATTTTCTTTTAGGGATA
GGAATCCAACGTTCCACTACCATCCCATGCTTGTACTTCTCTCGCGACGA
AGGGGGAGAGACAGACATTCTCGTGTCCGTCTATGTTGACAACCTGATCA
TTGCTTGA
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