mRNA_H-paniculata_contig19104.4791.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19104.4791.1
Unique NamemRNA_H-paniculata_contig19104.4791.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig19104.4791.1 vs. uniprot
Match: A0A540MM95_MALBA (Integrase catalytic domain-containing protein n=1 Tax=Malus baccata TaxID=106549 RepID=A0A540MM95_MALBA)

HSP 1 Score: 219 bits (559), Expect = 3.000e-61
Identity = 155/408 (37.99%), Postives = 215/408 (52.70%), Query Frame = 3
Query:  195 LRSDQGGEFTGEAFRQFCAENSIKQEFSSTYTPQQNGAAERSWRSIFEMNRSRMITANMGRRYWAEAVRAAVYCLNCAPMRPHNGGTPYEKWHGTTPKLDHLRIFGCTAYVIFQSH*RRKLDDKAWVKVFLGYYEDSPSYRVYIPENKSVQLSRNVRFDEE---DFVTGHRGQLEHDGTRDMEGLFSAPSVTPALTRSHARGEQGSTSASQMSPTLPTYSLPAASANPLNRSPIRTRARARENREEGQGATARMAKVEGTGNPTGAVSKGGAKSAAGALNGPEA---GKWHVAMEEEWGALMKNGTWESEDPGRLPAGRKAIRTKWIFKRKLKEDGSVARYKARLVAQGVSQLKGEDFFETSAPVASIWTLRTAFSLAAEQDFELEGMDVDAAYLNAPAEEELFVKLP 1400
            +RSD+GGEFT + F++FC  N I++  +   +PQQNG AER  R+I +M RS + +  + +  WAEAV  AVY  N +P R   G TP E W G  P + HLR+FG  A+V      R KLDDK+   +F+GY  +S  Y++Y P N+ + +SR+V FDEE   DF   H G L      + E            T   AR  Q  ++    SP    +    AS +       R   R R  R+  + A       E   NPT        +     ++  EA    KW  AM+EE  A+ KN TWE      LP G+KAI  KW++K K   +G V RYKARLVA+G SQ  G D+ E  APVA + T+R   SLAA+  ++++ MDV +A+LN   EEE++++ P
Sbjct:    1 MRSDRGGEFTSKEFQEFCEANGIRRSLTVPRSPQQNGVAERKNRTILDMVRSMLKSKRLPKEMWAEAVACAVYLSNRSPTRSVWGKTPQEAWSGRKPGISHLRVFGSIAHVHVPDERRAKLDDKSEKFIFIGYDSNSKGYKLYNPNNRKMVISRDVTFDEEEEWDFGP-HAGDLHFFPQFEEENEQG--------TMEQAREVQQESTTPPASPISTNHGNSPASTSSSGSLNEREVPRTRSIRDLYEVA-------ERLDNPTLFCLFADCEP----VDFQEAVQDTKWKKAMDEEIEAIEKNETWELTV---LPKGQKAIGVKWVYKTKKNANGEVERYKARLVAKGYSQRAGIDYDEVFAPVARLETIRLLISLAAQNKWKIQQMDVKSAFLNGVLEEEVYIQQP 385          
BLAST of mRNA_H-paniculata_contig19104.4791.1 vs. uniprot
Match: A0A2M4CK12_ANODA (Putative pol polyprotein (Fragment) n=1 Tax=Anopheles darlingi TaxID=43151 RepID=A0A2M4CK12_ANODA)

HSP 1 Score: 226 bits (575), Expect = 5.360e-61
Identity = 147/428 (34.35%), Postives = 212/428 (49.53%), Query Frame = 3
Query:  177 RATNTRLRSDQGGEFTGEAFRQFCAENSIKQEFSSTYTPQQNGAAERSWRSIFEMNRSRMITANMGRRYWAEAVRAAVYCLNCAPMRPHNGGTPYEKWHGTTPKLDHLRIFGCTAYVIFQSH*RRKLDDKAWVKVFLGYYEDSPSYRVYIPENKSVQLSRNVRFDEEDFVTG---HRGQLEHDGTRDMEGLFSA--------------PSVTPALTRSHARGEQGSTSASQMSPTLPTYSLPAASANPLNRSPIRTRARARENREEGQGATARMAKVEGTGNPTGAVSKGGAKSAAGALNGPEAGKWHVAMEEEWGALMKNGTWESEDPGRLPAGRKAIRTKWIFKRKLKEDGSVARYKARLVAQGVSQLKGEDFFETSAPVASIWTLRTAFSLAAEQDFELEGMDVDAAYLNAPAEEELFVKLPRVF 1409
            R T   +RSDQGGE++ +  + F     IK +++++Y+PQQNG AER  RS+ EM R  +  A + ++YWAEA+  AVY  N +P +P N  TPYE WHG  PK++HLRIFGC A+       R+KL   A    FLGY  D  +YR+       + +SR+V+F E+   +    H  +  H   +  E +                 P V PA   +     +  +       T PT  +P          P R  A   +++ E     +                         A+   E+  W  AM+EE  AL  N TWE     RLP GRKA+  KW +KRK  E+G + RYKARLVAQG SQ  G+D+ E  APV    T RT  +LA++Q+  ++ +D+  AYL+A  +E++++K P  F
Sbjct:   96 RKTPKAIRSDQGGEYSSKNLQDFYKREGIKPQYTASYSPQQNGVAERKNRSLIEMVRCMLFDAQLEQKYWAEAMNTAVYLQNISPTKPRNN-TPYETWHGVKPKVNHLRIFGCDAWAHIPKAKRKKLGATAQKLTFLGYSYDHKAYRLLDKTTNEIHISRDVKFIEKAPCSERAKHDRETRHQSKKPQEIIIDTTLKENPITIETQAEPEVQPAFEETREIVSEIDSDTEPRRSTRPTKGIP----------PDRLMANVIKHQIEQPHTYSE------------------------AIESTESTAWRAAMQEEINALQGNDTWELV---RLPLGRKAVGCKWTYKRKENENGEIVRYKARLVAQGYSQKFGQDYDEVFAPVIRQATFRTILTLASKQNMIVKHLDIKNAYLHAELQEDIYMKQPPGF 485          
BLAST of mRNA_H-paniculata_contig19104.4791.1 vs. uniprot
Match: A0A4Y1RDE4_PRUDU (Transposable element protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1RDE4_PRUDU)

HSP 1 Score: 216 bits (551), Expect = 2.620e-60
Identity = 146/414 (35.27%), Postives = 218/414 (52.66%), Query Frame = 3
Query:  195 LRSDQGGEFTGEAFRQFCAENSIKQEFSSTYTPQQNGAAERSWRSIFEMNRSRMITANMGRRYWAEAVRAAVYCLNCAPMRPHNGGTPYEKWHGTTPKLDHLRIFGCTAYVIFQSH*RRKLDDKAWVKVFLGYYEDSPSYRVYIPENKSVQLSRNVRFDEEDFVTGHRGQLEH------DGTRDMEGLFSAPSVTPALTRSHARGEQGSTSASQMSPTLPTYSLPAASANPLNRSPIRTRARARENREEGQGATARMAKVEGTGNPTGAVSKGGAKSAAGALNGPEAGK---WHVAMEEEWGALMKNGTWESEDPGRLPAGRKAIRTKWIFKRKLKEDGSVARYKARLVAQGVSQLKGEDFFETSAPVASIWTLRTAFSLAAEQDFELEGMDVDAAYLNAPAEEELFVKLPRVF 1409
            +RSD+GGE+T + F  +C +  I ++ +++Y+PQQNG AER  R+I EM  S M    + +R+WAEAV  AVY LN +P +     TP+E W G  P + HL+IFGC  Y    +  R K DDK+   +F+GY   +  YR+Y  E K + +SR+V F+E+     +  +++          R++ G       TP      A G       S   P  P YS   +S +P    P+RTR+               +  +  T N +G   +          +  EA K   W  AM++E   + KN TWE  D   LP  R  I  KWIFK K  +DG + ++KARLVA+G +Q  G DFFE  APVA + T+RT  +LAA++++ +  +DV +A+LN   +EE++V+ P+ F
Sbjct:   88 MRSDRGGEYTSQEFEDYCKDEGIWKQLTASYSPQQNGIAERKNRTIVEMATSMMNEKGLPKRFWAEAVFTAVYILNRSPTKVVKNKTPFEAWSGFKPSVRHLKIFGCICYAHIPAEKRTKFDDKSQKCIFVGYSSSTKGYRLYNVETKKLIVSRDVVFNEKARWDWNENKVQEMPYALVQEQREILGEHQEEEATPQTPA--AAGNN-----SNAEPVSPNYS---SSESP----PLRTRS---------------LNDIYETCNFSGIEPE----------SFEEAQKHEVWVKAMKDEIRMIEKNQTWELVD---LPKDRDVIGVKWIFKTKFNQDGGIQKHKARLVARGFTQKPGIDFFEIFAPVARLETIRTLIALAAQKNWLIYQLDVKSAFLNGVLKEEVYVEQPQGF 459          
BLAST of mRNA_H-paniculata_contig19104.4791.1 vs. uniprot
Match: A0A5B7BAX9_DAVIN (Putative lectin receptor kinase (Fragment) n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B7BAX9_DAVIN)

HSP 1 Score: 213 bits (543), Expect = 9.670e-60
Identity = 150/417 (35.97%), Postives = 209/417 (50.12%), Query Frame = 3
Query:  195 LRSDQGGEFTGEAFRQFCAENSIKQEFSSTYTPQQNGAAERSWRSIFEMNRSRMITANMGRRYWAEAVRAAVYCLNCAPMRPHNGGTPYEKWHGTTPKLDHLRIFGCTAYVIFQSH*RRKLDDKAWVKVFLGYYEDSPSYRVYIPENKSVQLSRNVRFDE------EDFVTGHRGQLEHDGTRDMEGLF---SAPSVTPALTRSHARGEQGSTSASQMSPTLPTYSLPAASANPLNRSPIRTRARARENREEGQGATARMAKVEGTGNPTGAVSKGGAKSAAGALNGPEAGK---WHVAMEEEWGALMKNGTWESEDPGRLPAGRKAIRTKWIFKRKLKEDGSVARYKARLVAQGVSQLKGEDFFETSAPVASIWTLRTAFSLAAEQDFELEGMDVDAAYLNAPAEEELFVKLPRVF 1409
            LRSD+GGE+T  AF+++C E  I+ +F++ YTPQQNG AER  R+I  M R+ +    + +++WAEAV  + Y  N  P +     TP E W G  P + HLRIFGC AY       R+KLDD+    +F+GY E+S +Y++Y P  K V +SR+V F+E       D  T     +  D       +    + PS  PA   +  RG   S   S  S                +  PI+ R+  RE   + +     +  +     P               L   EA +   W  AMEEE  A+ KN TWE      LP  +KAI  KW++K K   DG V RYKARLVA+G  Q  G D+ E  APVA + T+R   SLAA   +++  +DV +A+LN   EEE++V+ P  F
Sbjct:    6 LRSDRGGEYTSNAFQEYCREQGIRHQFTTAYTPQQNGIAERKNRTILNMTRTMLKEKGLSKQFWAEAVACSTYLPNRYPTKSVKHMTPQEAWSGYKPNVAHLRIFGCVAYAQVPEAKRKKLDDRGEKCIFIGYSEESKAYKLYNPLTKKVVVSRDVIFNEGEVWIWSDVETSKVQPVMEDPEEPSPEISPPGAPPSPQPATPSTVQRGFPPSVGGSSNS----------------SSKPIKMRS-LREIYAQTEDGETNLFCLYADHEP---------------LTFQEAMEKDCWRSAMEEEIHAIEKNDTWELTI---LPQKQKAIGIKWMYKIKCTADGEVDRYKARLVAKGYRQKYGIDYDEVFAPVARLDTVRLLISLAAHHSWKIYQLDVKSAFLNGILEEEVYVQQPEGF 387          
BLAST of mRNA_H-paniculata_contig19104.4791.1 vs. uniprot
Match: A0A151T355_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T355_CAJCA)

HSP 1 Score: 223 bits (569), Expect = 4.420e-59
Identity = 141/406 (34.73%), Postives = 200/406 (49.26%), Query Frame = 3
Query:  192 RLRSDQGGEFTGEAFRQFCAENSIKQEFSSTYTPQQNGAAERSWRSIFEMNRSRMITANMGRRYWAEAVRAAVYCLNCAPMRPHNGGTPYEKWHGTTPKLDHLRIFGCTAYVIFQSH*RRKLDDKAWVKVFLGYYEDSPSYRVYIPENKSVQLSRNVRFDEEDFVTGHRGQLEHDGTRDMEGLFSAPSVTPALTRSHARGEQGSTSASQMSPTLPTYSLPAASANPLNRSPIRTRARARENREEGQGATARMAKVEGTGNPTGAVSKGGAKSAAGALNGPEAGKWHVAMEEEWGALMKNGTWESEDPGRLPAGRKAIRTKWIFKRKLKEDGSVARYKARLVAQGVSQLKGEDFFETSAPVASIWTLRTAFSLAAEQDFELEGMDVDAAYLNAPAEEELFVKLPRVF 1409
            RLRSD G E+T   F++FC +  I+ + +  YTPQQNG +ER  R++ EM R  +    + + +WAEAV  +VY LN  P +   G TP+E WHG TP ++HL++FGC  Y +     R KLD K+ V +FLGY   S  YR+Y P  K + +SRNV+FDE       + + E    R +E           L   ++  E+ +         L     P      L     R    A E +E      A  A++EG                           W VAM+EE   + KN TW+  D    P  +K I  KW+++ KL  DGSV + KARLV +G  Q  G DF +T APVA   T+R   +LAA+  +++   DV +A+LN   EE+++V  P  F
Sbjct:  520 RLRSDNGTEYTAGEFKKFCEQVGIQHQLTVPYTPQQNGVSERKNRTVMEMARCLLFEKGLPKTFWAEAVNTSVYLLNLLPTKALKGNTPFEAWHGRTPSVEHLKVFGCVCYALVPEVKRDKLDQKSEVGIFLGYSSYSKGYRIYNPATKKILVSRNVKFDELSRWNWEKSKAEASNKRQLE--------VDNLQEQNSESEEQN---------LDDDDFPVRGTRDLAEIYERCNVAALEPKEY-----AEAAELEG---------------------------WRVAMQEEMNMIEKNNTWQLVD---RPINQKVIGLKWVYRTKLNYDGSVNKLKARLVVKGYHQQYGVDFLDTFAPVARHDTIRMLVALAAKFGWKIYHFDVKSAFLNGFLEEDIYVDQPEGF 873          
BLAST of mRNA_H-paniculata_contig19104.4791.1 vs. uniprot
Match: A0A1J3IBS4_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3IBS4_NOCCA)

HSP 1 Score: 219 bits (558), Expect = 2.790e-58
Identity = 146/410 (35.61%), Postives = 206/410 (50.24%), Query Frame = 3
Query:  195 LRSDQGGEFTGEAFRQFCAENSIKQEFSSTYTPQQNGAAERSWRSIFEMNRSRMITANMGRRYWAEAVRAAVYCLNCAPMRPHNGGTPYEKWHGTTPKLDHLRIFGCTAYVIFQSH*RRKLDDKAWVKVFLGYYEDSPSYRVYIPENKSVQLSRNVRFDEED---FVTGHRGQLEHD--GTRDMEGLFSAPSVTPALTRSHARGEQGSTSASQMSPTLPTYSLPAASANPLNRSPIRTRARARENREEGQGATARMAKVEGTGNPTGAVSKGGAKSAAGALNGPEAGKWHVAMEEEWGALMKNGTWESEDPGRLPAGRKAIRTKWIFKRKLKEDGSVARYKARLVAQGVSQLKGEDFFETSAPVASIWTLRTAFSLAAEQDFELEGMDVDAAYLNAPAEEELFVKLPRVF 1409
            LR+D+GGEFT   F +FC    I  E ++ YTP+QNG AER  R++ EM RS +   N+  ++WAE+VR AVY LN +P +     TPYE W G  P + HLR+FG  AY +  +H R+KLDDK+   +FLGY   S  YR+Y P +  +  SRNV FDEE       G  G+LE       D + +  +P  + A T +++               +P              S    + R+ +   E Q A         T +PT                  E   W  AM+EE  ++ KN TW+  +   LP G+ +I  KW+FK K   DGS+ +YKARLV +G +Q  G D+ ET +PVA   T+RT  +L A   + +   DV +A+LN    EE++V  P  F
Sbjct:  143 LRTDRGGEFTSTEFNKFCESEGIHHELTTAYTPEQNGVAERKNRTVVEMARSMLKQKNLPNQFWAESVRTAVYLLNISPTKAVLNRTPYEAWCGRKPGVSHLRVFGSIAYSLIDAHNRKKLDDKSEKCIFLGYSSQSKGYRLYNPVSGKIIESRNVTFDEETVWRLREGDNGELEEIVVDNNDEQVVSESPVGSEANTPTNS---------------VPNSXXXXXXXXXXXXSNAPQKFRSLQEIYEVQHAFF-------TSDPTMFT------------EAAEKEDWRKAMDEEITSIEKNSTWQLVE---LPEGKHSIGVKWVFKTKYHADGSIQKYKARLVVKGYAQEYGVDYEETFSPVARFDTVRTLLALGAHMHWPIYQFDVKSAFLNGELLEEVYVDQPEGF 515          
BLAST of mRNA_H-paniculata_contig19104.4791.1 vs. uniprot
Match: A0A4Y1QR18_PRUDU (Multidrug resistance-associated protein 9 n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1QR18_PRUDU)

HSP 1 Score: 211 bits (538), Expect = 3.380e-58
Identity = 144/414 (34.78%), Postives = 217/414 (52.42%), Query Frame = 3
Query:  195 LRSDQGGEFTGEAFRQFCAENSIKQEFSSTYTPQQNGAAERSWRSIFEMNRSRMITANMGRRYWAEAVRAAVYCLNCAPMRPHNGGTPYEKWHGTTPKLDHLRIFGCTAYVIFQSH*RRKLDDKAWVKVFLGYYEDSPSYRVYIPENKSVQLSRNVRFDEEDFVTGHRGQLEH------DGTRDMEGLFSAPSVTPALTRSHARGEQGSTSASQMSPTLPTYSLPAASANPLNRSPIRTRARARENREEGQGATARMAKVEGTGNPTGAVSKGGAKSAAGALNGPEAGK---WHVAMEEEWGALMKNGTWESEDPGRLPAGRKAIRTKWIFKRKLKEDGSVARYKARLVAQGVSQLKGEDFFETSAPVASIWTLRTAFSLAAEQDFELEGMDVDAAYLNAPAEEELFVKLPRVF 1409
            +RSD+GGE+T + F  +C +  I ++ +++Y+PQQNG AER  R+I +M  S M    + +R+WAEAV  AVY LN +P +     T +E W G  P + HL+IFGC  Y    +  R K DDK+   +F+GY   +  YR+Y  E K + +SR+V F+E+     +  +++          R++ G       TP      A G       S   P  P YS   +S +P    P+RTR+               +  +  T N +G   +          +  EA K   W  AM++E   + KN TWE  D   LP  R  I  KWIFK K  +DG + ++KARLVA+G +Q  G DFFE  APVA + T+RT  +LAA++++ +  +DV +A+LN   +EE++V+ P+ F
Sbjct:   35 MRSDRGGEYTSQEFEDYCKDEGIWKQLTASYSPQQNGIAERKNRTIVDMATSMMNEKGLPKRFWAEAVFTAVYILNRSPTKVVKNKTLFEAWSGFKPSVRHLKIFGCICYAHIPAEKRTKFDDKSQKCIFVGYSSSTKGYRLYNVETKKLIVSRDVVFNEKARWDWNENKVQEMPYALVQEQREILGEHQEEEATPQTPA--AAGNN-----SNAEPVSPNYS---SSESP----PLRTRS---------------LNDIYETCNFSGIEPE----------SFEEAQKHEVWVKAMKDEIRMIEKNQTWELVD---LPKDRDVIGVKWIFKTKFNQDGGIQKHKARLVARGFTQKPGIDFFEIFAPVARLETIRTLIALAAQKNWLIYQLDVKSAFLNGVLKEEVYVEQPQGF 406          
BLAST of mRNA_H-paniculata_contig19104.4791.1 vs. uniprot
Match: A0A6S7K875_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7K875_PARCT)

HSP 1 Score: 214 bits (545), Expect = 1.950e-56
Identity = 144/410 (35.12%), Postives = 206/410 (50.24%), Query Frame = 3
Query:  195 LRSDQGGEFTGEAFRQFCAENSIKQEFSSTYTPQQNGAAERSWRSIFEMNRSRMITANMGRRYWAEAVRAAVYCLNCAPMRPHNGGTPYEKWHGTTPKLDHLRIFGCTAYVIFQSH*RRKLDDKAWVKVFLGYYEDSPSYRVYIPENKSVQLSRNVRFDEEDF-----VTGHRGQLEHDGTRDMEGLFSAPSVTPALTRSHARGEQGSTSASQMSPTLPTYSLPAASANPLNRSPIRTRARARENREEGQGATARMAKVEGTGNPTGAVSKGGAKSAAGALNGPEAGKWHVAMEEEWGALMKNGTWESEDPGRLPAGRKAIRTKWIFKRKLKEDGSVARYKARLVAQGVSQLKGEDFFETSAPVASIWTLRTAFSLAAEQDFELEGMDVDAAYLNAPAEEELFVKLPRVF 1409
            LR+D GGEFT   F  +     +K E S   TP+QNG AER  R++ E  R  +I + + +++W EA+  AVY  N +P +     TP+E W G  P + HLR FGCT Y       R+KLD KA   V LGY  ++  YR+Y P+N  V  SR+V+F+E +F     + G+  Q +   T ++                    +Q                  A +A    R P+R R   R     G+  T     V     PT  VS+        AL GP A +WH AM++E  +L ++  W+  +   LP  RKA+  KW+FK K   DGS+ R+KARLVAQG SQ  G D+ ET +PV    ++RT  +L+ ++  +L  MDV AA+LN   E+E+++K P  F
Sbjct:  550 LRTDNGGEFTSNEFENYLKSEGVKHELSVPKTPEQNGVAERLNRTLIEAVRGMLIQSKLPQKFWVEALSTAVYLHNRSPTKGVANMTPFEAWTGVKPDVKHLRSFGCTVYAHIPKDERKKLDSKAKKCVLLGYGTETKGYRLYDPQNSRVIYSRDVKFNESEFGIEKELPGNEFQADKHVTLELSNDNDVV----------VEDDQ------------------ADNAEINERQPVRER---RAPDRFGEWVTIASKDVV---EPT-TVSE--------ALCGPNAERWHEAMQQEMDSLQEHDVWKLTE---LPKDRKAVGCKWVFKVKYNADGSIERHKARLVAQGFSQRFGVDYDETFSPVVRFESIRTVIALSVQRGLKLHQMDVTAAFLNGELEDEVYMKQPEGF 913          
BLAST of mRNA_H-paniculata_contig19104.4791.1 vs. uniprot
Match: A0A6A3B0J2_HIBSY (Agamous-like MADS-box protein AGL6 n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3B0J2_HIBSY)

HSP 1 Score: 212 bits (540), Expect = 2.950e-55
Identity = 144/402 (35.82%), Postives = 202/402 (50.25%), Query Frame = 3
Query:  195 LRSDQGGEFTGEAFRQFCAENSIKQEFSSTYTPQQNGAAERSWRSIFEMNRSRMITANMGRRYWAEAVRAAVYCLNCAPMRPHNGGTPYEKWHGTTPKLDHLRIFGCTAYVIFQSH*RRKLDDKAWVKVFLGYYEDSPSYRVYIPENKSVQLSRNVRFDEEDFVTGHRGQLEHDGTRDMEGLFSAPSVTPALTRSHARGEQGSTSASQMSPTLPTYSLPAASANPLNRSPIRTRARARENREEGQGATARMAKVEGTGNPTGAVSKGGAKSAAGALNGPEAGKWHVAMEEEWGALMKNGTWESEDPGRLPAGRKAIRTKWIFKRKLKEDGSVARYKARLVAQGVSQLKGEDFFETSAPVASIWTLRTAFSLAAEQDFELEGMDVDAAYLNAPAEEELFVKLP 1400
            +RSD+GGEFT   F++FC  N I++  +   +PQQNG AER  R+I +M RS + +  + + +WAEAV  AVY  N +P R   G TP E W G  P + HLR FG  A+V      R KLDDK+   +F+GY  +S  Y++Y P+NK   +SR+V F+EE       G+ + +   D    F      P         E   T   Q+  +    + P  S N  +   + T                    V+   N   AV +                KW  AM+EE  A+ KN TWE      LP G KAI  KW++K K    G + R+KARLVA+G SQ  G D+ E  APVA + T+R   SLAA+  ++++ MDV +A+LN   EEEL+++ P
Sbjct:  510 MRSDRGGEFTSREFQEFCEANGIRRPMTVPRSPQQNGVAERKNRTILDMARSMLKSKKLPKEFWAEAVSCAVYLSNRSPTRSVWGKTPQEAWSGRKPGISHLRTFGSIAHVHVPDERRTKLDDKSESFIFIGYDANSKGYKLYNPDNKKFVISRDVVFNEE-------GEWDFNSHTDDFNFF------PQFE------EDEQTMREQLDESQQELATPPTSPNINHSRRLIT-----------------FIIVKWESNFQEAVQEK---------------KWRDAMDEEIKAIEKNDTWELTS---LPKGHKAIGVKWVYKTKQNAKGEIERHKARLVAKGYSQKAGIDYDEIFAPVARLETIRLIISLAAQNKWKIQQMDVKSAFLNGVLEEELYIQQP 857          
BLAST of mRNA_H-paniculata_contig19104.4791.1 vs. uniprot
Match: A0A0V0VEL0_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=5 Tax=Trichinella TaxID=6333 RepID=A0A0V0VEL0_9BILA)

HSP 1 Score: 206 bits (525), Expect = 3.990e-55
Identity = 144/413 (34.87%), Postives = 193/413 (46.73%), Query Frame = 3
Query:  192 RLRSDQGGEFTGEAFRQFCAENSIKQEFSSTYTPQQNGAAERSWRSIFEMNRSRMITANMGRRYWAEAVRAAVYCLNCAPMRPHNGGTPYEKWHGTTPKLDHLRIFGCTAYVIFQSH*RRKLDDKAWVKVFLGYYEDSPSYRVYIPENKSVQLSRNVRFDEE-----DFVTGHRGQLEHDGTRDMEGLFSAPSVTPALTRSHARGEQGSTSASQMSPTLPTYSLPAASANPLN--RSPIRTRARARENREEGQGATARMAKVEGTGNPTGAVSKGGAKSAAGALNGPEAGKWHVAMEEEWGALMKNGTWESEDPGRLPAGRKAIRTKWIFKRKLKEDGSVARYKARLVAQGVSQLKGEDFFETSAPVASIWTLRTAFSLAAEQDFELEGMDVDAAYLNAPAEEELFVKLPRVF 1409
            R+R+D+G EF       F  E  I  E +  YTPQ NG AER  R++ E  R+ + T N+ R  WAEAV  A Y LN  P R     TPYE+W G  P ++HLRIFGC AYV      RRK D KA   +F+GY   +  +RV+      V    +V+F+E        + G          +D E  F     T   T     G                   P  S N +    +P++   R++        A A     E                   AL G  A KW  AM EE  AL  N TW   D   LPA RK I+ KW+FK K+  DG V++YKARLVA+G SQ    D+FET APV    ++RT  ++AA++D E++  DV  A+L+   +E +F++ P  F
Sbjct:   28 RIRTDRGTEFANRELDNFLTEKKIVHEKTPPYTPQCNGMAERENRTLVEKARAMLHTRNLPRCLWAEAVHTAAYLLNRIPNRKEITKTPYEEWFGRRPTVEHLRIFGCDAYVHIPDQHRRKFDPKARKVIFVGYGPSNKMFRVFDTNKHRVDEVTDVQFNESLQKRLVLIDGEEDSWMQTADKD-EDDFLEDDTTDDKTEKRGPGR------------------PPGSKNKIKVISNPLKMELRSKSTERTAMLAAADPLTEEE------------------ALEGANAEKWKEAMLEEISALHMNDTWILTD---LPADRKTIQCKWVFKSKINSDGEVSKYKARLVAKGYSQRAEIDYFETFAPVVRYESVRTLLAIAADEDLEIQQFDVKTAFLHGKIDELIFMEQPPCF 400          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19104.4791.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A540MM95_MALBA3.000e-6137.99Integrase catalytic domain-containing protein n=1 ... [more]
A0A2M4CK12_ANODA5.360e-6134.35Putative pol polyprotein (Fragment) n=1 Tax=Anophe... [more]
A0A4Y1RDE4_PRUDU2.620e-6035.27Transposable element protein n=1 Tax=Prunus dulcis... [more]
A0A5B7BAX9_DAVIN9.670e-6035.97Putative lectin receptor kinase (Fragment) n=1 Tax... [more]
A0A151T355_CAJCA4.420e-5934.73Retrovirus-related Pol polyprotein from transposon... [more]
A0A1J3IBS4_NOCCA2.790e-5835.61Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y1QR18_PRUDU3.380e-5834.78Multidrug resistance-associated protein 9 n=1 Tax=... [more]
A0A6S7K875_PARCT1.950e-5635.12Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A6A3B0J2_HIBSY2.950e-5535.82Agamous-like MADS-box protein AGL6 n=1 Tax=Hibiscu... [more]
A0A0V0VEL0_9BILA3.990e-5534.87Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19104contigH-paniculata_contig19104:2971..4875 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score83.6
Seed ortholog evalue7.1e-14
Seed eggNOG ortholog164328.Phyra87462
Hectar predicted targeting categoryother localisation
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs3QHJF@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons3
Model size1725
Cds size363
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19104.4791.1prot_H-paniculata_contig19104.4791.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19104 4513..4875 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929462.8178782-UTR-H-paniculata_contig19104:2970..37731622929462.8178782-UTR-H-paniculata_contig19104:2970..3773Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19104 2971..3773 +
1691480872.0886638-UTR-H-paniculata_contig19104:2970..37731691480872.0886638-UTR-H-paniculata_contig19104:2970..3773Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19104 2971..3773 +
1622929462.838763-UTR-H-paniculata_contig19104:3794..38641622929462.838763-UTR-H-paniculata_contig19104:3794..3864Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19104 3795..3864 +
1691480872.106741-UTR-H-paniculata_contig19104:3794..38641691480872.106741-UTR-H-paniculata_contig19104:3794..3864Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19104 3795..3864 +
1622929462.8576488-UTR-H-paniculata_contig19104:4023..45121622929462.8576488-UTR-H-paniculata_contig19104:4023..4512Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19104 4024..4512 +
1691480872.1163454-UTR-H-paniculata_contig19104:4023..45121691480872.1163454-UTR-H-paniculata_contig19104:4023..4512Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19104 4024..4512 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929462.8745422-CDS-H-paniculata_contig19104:4512..48751622929462.8745422-CDS-H-paniculata_contig19104:4512..4875Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19104 4513..4875 +
1691480872.1256835-CDS-H-paniculata_contig19104:4512..48751691480872.1256835-CDS-H-paniculata_contig19104:4512..4875Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19104 4513..4875 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19104.4791.1

>prot_H-paniculata_contig19104.4791.1 ID=prot_H-paniculata_contig19104.4791.1|Name=mRNA_H-paniculata_contig19104.4791.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=121bp
MPRQKKSCLLSYPECSPFSRDIPFVRRLKKSLYDLKQSGRNWNNALDDFL
VGIVLDHSITDLCLYLSRDEGGGTNLLVAVYVDDLVIPDRREKVDEFKHN
ISQRFRMKDLSSLSRVLGIEI
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mRNA from alignment at H-paniculata_contig19104:2971..4875+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19104.4791.1 ID=mRNA_H-paniculata_contig19104.4791.1|Name=mRNA_H-paniculata_contig19104.4791.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1905bp|location=Sequence derived from alignment at H-paniculata_contig19104:2971..4875+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGGAACTAGTGTATACTGACATCGCAGGACCGGTAGACAAATCTTTCGA GGGACGCCGTTTCGCCATTATCTTCGTGGACGACTACAGTCAAATGTGTA AGGTCTACGCTCTGAGACACAAACCAGAGGCGTCATGGGCTCTGAAACAA TTCGAGCGAGACATCGCGAAGGCAAACGGGCTACAAATACACGTCTTCGG TCAGACCAAGGAGGAGAGTTTACAGGAGAAGCGTTCCGACAGTTTTGTGC AGAAAATAGCATCAAGCAAGAATTTTCTTCCACCTACACGCCGCAGCAAA ACGGTGCGGCGGAGCGTAGTTGGCGTAGCATTTTTGAGATGAACAGAAGT AGAATGATAACCGCTAACATGGGTCGCAGGTATTGGGCGGAGGCGGTGCG CGCGGCTGTGTACTGCTTAAATTGCGCCCCGATGCGACCGCACAACGGAG GGACACCTTATGAGAAATGGCACGGCACGACACCAAAGCTTGACCACCTT CGTATCTTCGGCTGCACGGCGTACGTGATATTCCAGTCGCATTAGAGACG AAAACTCGATGACAAAGCATGGGTGAAGGTATTTCTGGGTTACTACGAAG ACAGCCCGAGTTATCGCGTATATATCCCAGAAAACAAGAGCGTCCAGTTG AGCAGGAACGTAAGATTTGACGAAGAGGATTTCGTAACCGGTCATCGCGG ACAGCTGGAGCACGACGGGACGCGAGACATGGAAGGCCTGTTTTCAGCAC CGTCGGTCACACCAGCGCTCACTCGATCCCACGCCCGCGGCGAGCAAGGA AGCGTAACTAGCACAGAAGACTAGACATCGGCGTCACAAATGTCGCCCAC ATTGCCGACATATTCGCTGCCAGCCGCCAGCGCAAACCCATTAAGTGTCT TGAGCGATGACGACGATGACGACAGTAACAGCGACTCGAACATGAAGAAT CTGGAGTCCGCAGTCGAAAACGCACCATCAGCAGGGATAGCCACACCCGC GTCGCAGGGAAACACCACGAAGTAGTCAGGGACGGAGGAGCAGCGTCCGC GAGATCGGTCACCAATACGAACACGAGCGAGAGCGAGAGAAAACCGCGAA GAAGGTCAAGGCGCTACCGCGCGCATGGCAAAAGTGGAAGGCACTGGCAA CCCTACAGGGGCGGTATCTAAGGGGGGGGCGAAATCCGCGGCAGGAGCGT TAAACGGCCCAGAGGCGGGAAAATGGCACGTAGCAATGGAGGAAGAATGG GGGGCGTTGATGAAAAATGGGACATGGGAAAGCGAAGACCCGGGGAGGTT ACCGGCAGGGCGGAAGGCGATTCGTACGAAATGGATTTTCAAGCGGAAAC TGAAGGAGGACGGCAGCGTGGCACGCTACAAAGCACGACTGGTGGCTCAA GGCGTTTCACAGTTGAAGGGTGAAGATTTCTTTGAAACCAGTGCCCCTGT AGCTAGCATTTGGACGCTACGTACTGCTTTTAGCCTGGCCGCCGAACAGG ATTTCGAATTGGAAGGCATGGACGTAGATGCGGCGTATTTGAATGCCCCG GCAGAAGAAGAGCTGTTTGTTAAGCTACCCCGAGTGTTCCCCTTTCTCTC GAGACATACCGTTTGTGCGCCGCCTGAAAAAAAGCCTGTACGATCTCAAG CAGAGCGGCCGAAACTGGAACAATGCTCTTGACGATTTTCTTGTTGGGAT AGTACTCGACCACTCCATTACCGACTTATGCTTGTACCTTTCCCGCGACG AAGGGGGAGGGACAAACCTTCTGGTGGCAGTCTATGTTGATGACCTCGTC ATTCCTGACCGTCGTGAGAAAGTAGACGAGTTCAAGCATAACATAAGTCA GCGTTTTAGGATGAAAGACTTGAGCTCCCTCTCTCGCGTGTTGGGAATAG AAATA
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Coding sequence (CDS) from alignment at H-paniculata_contig19104:2971..4875+

>mRNA_H-paniculata_contig19104.4791.1 ID=mRNA_H-paniculata_contig19104.4791.1|Name=mRNA_H-paniculata_contig19104.4791.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=726bp|location=Sequence derived from alignment at H-paniculata_contig19104:2971..4875+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCCCGGCAGAAGAAGAGCTGTTTGTTAAGCTACCCCGAGTGTTCCCC
TTTCTCTCGAGACATACCGTTTGTGCGCCGCCTGAAAAAAAGCCTGTACG
ATCTCAAGCAGAGCGGCCGAAACTGGAACAATGCTCTTGACGATTTTCTT
GTTGGGATAGTACTCGACCACTCCATTACCGACTTATGCTTGTACCTTTC
CCGCGACGAAGGGGGAGGGACAAACCTTCTGGTGGCAGTCTATGTTGATG
ACCTCGTCATTCCTGACCGTCGTGAGAAAGTAGACGAGTTCAAGCATAAC
ATAAGTCAGCGTTTTAGGATGAAAGACTTGAGCTCCCTCTCTCGCGTGTT
GGGAATAGAAATAATGCCCCGGCAGAAGAAGAGCTGTTTGTTAAGCTACC
CCGAGTGTTCCCCTTTCTCTCGAGACATACCGTTTGTGCGCCGCCTGAAA
AAAAGCCTGTACGATCTCAAGCAGAGCGGCCGAAACTGGAACAATGCTCT
TGACGATTTTCTTGTTGGGATAGTACTCGACCACTCCATTACCGACTTAT
GCTTGTACCTTTCCCGCGACGAAGGGGGAGGGACAAACCTTCTGGTGGCA
GTCTATGTTGATGACCTCGTCATTCCTGACCGTCGTGAGAAAGTAGACGA
GTTCAAGCATAACATAAGTCAGCGTTTTAGGATGAAAGACTTGAGCTCCC
TCTCTCGCGTGTTGGGAATAGAAATA
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