prot_H-paniculata_contig19104.4791.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig19104.4791.1
Unique Nameprot_H-paniculata_contig19104.4791.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length121
Homology
BLAST of mRNA_H-paniculata_contig19104.4791.1 vs. uniprot
Match: A0A7D9J8D6_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9J8D6_PARCT)

HSP 1 Score: 90.1 bits (222), Expect = 2.280e-19
Identity = 45/99 (45.45%), Postives = 63/99 (63.64%), Query Frame = 0
Query:   22 IPFVRRLKKSLYDLKQSGRNWNNALDDFLVGIVLDHSITDLCLYLSRDEGGGTNLLVAVYVDDLVIPDRR-EKVDEFKHNISQRFRMKDLSSLSRVLGI 119
            +  V RLKKSLY LKQSGRNWN  LD +L+      +  D C+Y  + + GG  ++V ++VDDL+I     +K+ +FK N+  +FRMKDL  +S  LGI
Sbjct:  163 VKLVYRLKKSLYGLKQSGRNWNRVLDGYLISDGFVRNPVDHCVY--QKQTGGDIVIVVIWVDDLIIASNNTDKISQFKENMKSKFRMKDLEEISYFLGI 259          
BLAST of mRNA_H-paniculata_contig19104.4791.1 vs. uniprot
Match: W7TII5_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TII5_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 4.840e-18
Identity = 48/111 (43.24%), Postives = 67/111 (60.36%), Query Frame = 0
Query:   12 YPECSPFSRDIPFVRRLKKSLYDLKQSGRNWNNALDDFLVGIVLDHSITDLCLYLSRDEGGGTNLLVAVYVDDLVIP-DRREKVDEFKHNISQRFRMKDLSSLSRVLGIEI 121
            Y +C P   ++  V RL+KSLY LKQSGRNW+  +D +  G     S  D CLY+ +    G  L++ +YVDDL+I  + R+ VD+FK  IS+   MKDL  L  +LG+ I
Sbjct:  107 YEQCGPNGEEL--VCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHSSSADPCLYV-KFGSSGEMLVIVLYVDDLIIAGNSRDMVDDFKQAISKEISMKDLKELDWILGMAI 214          
BLAST of mRNA_H-paniculata_contig19104.4791.1 vs. uniprot
Match: A0A6S7HLY2_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HLY2_PARCT)

HSP 1 Score: 88.2 bits (217), Expect = 6.440e-18
Identity = 44/99 (44.44%), Postives = 63/99 (63.64%), Query Frame = 0
Query:   22 IPFVRRLKKSLYDLKQSGRNWNNALDDFLVGIVLDHSITDLCLYLSRDEGGGTNLLVAVYVDDLVIPDRR-EKVDEFKHNISQRFRMKDLSSLSRVLGI 119
            +  V RLKKSLY LKQSGRNWN  LD++L+      +  D C+Y  + + G   ++V ++VDDL+I     +K+ +FK N+  +FRMKDL  +S  LGI
Sbjct:  310 VKLVYRLKKSLYGLKQSGRNWNRVLDEYLISDGFIRNPVDHCVY--QKQTGEDIIIVVIWVDDLIIASSNTDKISQFKENMKSKFRMKDLGEISYFLGI 406          
BLAST of mRNA_H-paniculata_contig19104.4791.1 vs. uniprot
Match: A0A7D9HG25_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HG25_PARCT)

HSP 1 Score: 87.4 bits (215), Expect = 1.040e-17
Identity = 44/99 (44.44%), Postives = 63/99 (63.64%), Query Frame = 0
Query:   22 IPFVRRLKKSLYDLKQSGRNWNNALDDFLVGIVLDHSITDLCLYLSRDEGGGTNLLVAVYVDDLVIPDRR-EKVDEFKHNISQRFRMKDLSSLSRVLGI 119
            +  V RLKKSLY LKQSGRNWN  LD++L+      +  D C+Y  + + G   ++V ++VDDL+I     +K+ +FK N+  +FRMKDL  +S  LGI
Sbjct:  285 VKLVYRLKKSLYGLKQSGRNWNRVLDEYLISDGFVRNPVDHCVY--QKQTGEDIIIVVIWVDDLIIASSNTDKIRQFKENMKSKFRMKDLGEISYFLGI 381          
BLAST of mRNA_H-paniculata_contig19104.4791.1 vs. uniprot
Match: W7TIV7_9STRA (Transposable element n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIV7_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 3.770e-17
Identity = 49/111 (44.14%), Postives = 64/111 (57.66%), Query Frame = 0
Query:   12 YPECSPFSRDIPFVRRLKKSLYDLKQSGRNWNNALDDFLVGIVLDHSITDLCLYLSRDEGGGTNLLVAVYVDDLVIPDR-REKVDEFKHNISQRFRMKDLSSLSRVLGIEI 121
            Y +C P   ++  V  L+KSLY LKQSGRNW+  +D +  G     S  D CLY+     G   L++ +YVDDL+I    R+ VD FK  IS +F MKDL  L  +LGI I
Sbjct:  169 YEQCGPNGDEL--VCLLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEI-LVIVLYVDDLIIASNSRDMVDNFKQAISMKFSMKDLKELDWILGIAI 276          
BLAST of mRNA_H-paniculata_contig19104.4791.1 vs. uniprot
Match: A0A6A7FPR7_9CRUS (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7FPR7_9CRUS)

HSP 1 Score: 84.0 bits (206), Expect = 3.840e-17
Identity = 44/96 (45.83%), Postives = 59/96 (61.46%), Query Frame = 0
Query:   25 VRRLKKSLYDLKQSGRNWNNALDDFLVGIVLDHSITDLCLYLSRDEGGGTNLLVAVYVDDLVIPDRREKV-DEFKHNISQRFRMKDLSSLSRVLGI 119
            V +L KSLY LKQSGRNWNN L DFLV I  + S  D CLY    +     +++ +YVDD+++      V D+ K ++  RF+MKDL  LS  LG+
Sbjct:  127 VCKLNKSLYGLKQSGRNWNNLLHDFLVNIGFEQSFADQCLYTRYKDN--IKIILIIYVDDIILAASNNAVLDDVKISLCNRFKMKDLGKLSWFLGM 220          
BLAST of mRNA_H-paniculata_contig19104.4791.1 vs. uniprot
Match: W7T0T3_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T0T3_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 4.330e-17
Identity = 47/98 (47.96%), Postives = 61/98 (62.24%), Query Frame = 0
Query:   25 VRRLKKSLYDLKQSGRNWNNALDDFLVGIVLDHSITDLCLYLSRDEGGGTNLLVAVYVDDLVIPDR-REKVDEFKHNISQRFRMKDLSSLSRVLGIEI 121
            V RL+KSLY LKQSGRNW+  +D +  G     S  D CLY+     G   L++ +YVDDL+I    RE V++FKH IS+ F MKDL  L  +LG+ I
Sbjct:  558 VCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEI-LVIVLYVDDLIITSNSREMVNKFKHAISREFSMKDLKELDWILGMAI 654          
BLAST of mRNA_H-paniculata_contig19104.4791.1 vs. uniprot
Match: W7TCB8_9STRA (Gag-pol polyprotein n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TCB8_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 6.630e-17
Identity = 47/98 (47.96%), Postives = 60/98 (61.22%), Query Frame = 0
Query:   25 VRRLKKSLYDLKQSGRNWNNALDDFLVGIVLDHSITDLCLYLSRDEGGGTNLLVAVYVDDLVIPDR-REKVDEFKHNISQRFRMKDLSSLSRVLGIEI 121
            V RL+KSLY LKQSGRNW+  +D +  G     S  D CLY+     G   L++ +YVDDL+I    RE V +FKH IS+ F MKDL  L  +LG+ I
Sbjct:  118 VCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEI-LVIVLYVDDLIITSNSREMVGKFKHAISREFSMKDLKELDWILGMAI 214          
BLAST of mRNA_H-paniculata_contig19104.4791.1 vs. uniprot
Match: A0A2G8LC06_STIJA (Uncharacterized protein n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8LC06_STIJA)

HSP 1 Score: 85.1 bits (209), Expect = 7.590e-17
Identity = 42/96 (43.75%), Postives = 61/96 (63.54%), Query Frame = 0
Query:   25 VRRLKKSLYDLKQSGRNWNNALDDFLVGIVLDHSITDLCLYLSRDEGGGTNLLVAVYVDDLVIPDRREKV-DEFKHNISQRFRMKDLSSLSRVLGI 119
            V RLKKSLY LKQSGRNWN+ L  + VG     S+ D C+Y   +E   T  ++ V+VDD++I   R+ + ++ K  ++ RF+MKDL  +S  LG+
Sbjct:   35 VCRLKKSLYGLKQSGRNWNSLLHSYFVGESYSQSLVDPCVYTKHEENDMT--IILVWVDDIIITTNRDSILEDVKRGLTSRFKMKDLGEISMFLGM 128          
BLAST of mRNA_H-paniculata_contig19104.4791.1 vs. uniprot
Match: W7TIM1_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIM1_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 8.080e-17
Identity = 47/98 (47.96%), Postives = 61/98 (62.24%), Query Frame = 0
Query:   25 VRRLKKSLYDLKQSGRNWNNALDDFLVGIVLDHSITDLCLYLSRDEGGGTNLLVAVYVDDLVIPDR-REKVDEFKHNISQRFRMKDLSSLSRVLGIEI 121
            V RL+KSLY LKQSGRNW+  +D +  G     S  D CLY+ +    G  L++ +YVDDL+I    RE VD+FK  IS+ F MKDL  L  +LG+ I
Sbjct:  347 VCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYV-KFGSSGEMLVIVLYVDDLIITSNSREMVDKFKQAISREFSMKDLKELDWILGMAI 443          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19104.4791.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7D9J8D6_PARCT2.280e-1945.45Reverse transcriptase Ty1/copia-type domain-contai... [more]
W7TII5_9STRA4.840e-1843.24Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]
A0A6S7HLY2_PARCT6.440e-1844.44Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7D9HG25_PARCT1.040e-1744.44Reverse transcriptase Ty1/copia-type domain-contai... [more]
W7TIV7_9STRA3.770e-1744.14Transposable element n=1 Tax=Nannochloropsis gadit... [more]
A0A6A7FPR7_9CRUS3.840e-1745.83Retrovirus-related Pol polyprotein from transposon... [more]
W7T0T3_9STRA4.330e-1747.96Gag-pol polyprotein n=2 Tax=Nannochloropsis gadita... [more]
W7TCB8_9STRA6.630e-1747.96Gag-pol polyprotein n=3 Tax=Nannochloropsis gadita... [more]
A0A2G8LC06_STIJA7.590e-1743.75Uncharacterized protein n=1 Tax=Stichopus japonicu... [more]
W7TIM1_9STRA8.080e-1747.96Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 20..121
e-value: 7.8E-21
score: 74.8
NoneNo IPR availablePANTHERPTHR11439:SF252coord: 28..115
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 28..115

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19104contigH-paniculata_contig19104:4513..4875 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19104.4791.1mRNA_H-paniculata_contig19104.4791.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig19104 2971..4875 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig19104.4791.1 ID=prot_H-paniculata_contig19104.4791.1|Name=mRNA_H-paniculata_contig19104.4791.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=121bp
MPRQKKSCLLSYPECSPFSRDIPFVRRLKKSLYDLKQSGRNWNNALDDFL
VGIVLDHSITDLCLYLSRDEGGGTNLLVAVYVDDLVIPDRREKVDEFKHN
ISQRFRMKDLSSLSRVLGIEI
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like