mRNA_H-paniculata_contig19050.4775.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19050.4775.1
Unique NamemRNA_H-paniculata_contig19050.4775.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig19050.4775.1 vs. uniprot
Match: A0A6S4QRE4_9PHAE (Photosystem I P700 apoprotein A1 (Fragment) n=3 Tax=Ochrophyta TaxID=2696291 RepID=A0A6S4QRE4_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 1.490e-26
Identity = 55/62 (88.71%), Postives = 57/62 (91.94%), Query Frame = 1 
Query:    1 HLLAPPSRAPTALTTASYVFGGDVVSIGSKIAIMPINLSTGDFMVHHIHAFTLHVTVLILLK 186
            HLLAP S AP ALTTASYVFGGD+VSIGSKIAIMPI LST DFMVHHIHAFT+HVTVLILLK
Sbjct:  434 HLLAPSSTAPNALTTASYVFGGDIVSIGSKIAIMPIKLSTADFMVHHIHAFTIHVTVLILLK 495
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BLAST of mRNA_H-paniculata_contig19050.4775.1 vs. uniprot
Match: A0ELG5_9PHAE (Photosystem I P700 Chl a apoprotein A1 (Fragment) n=5 Tax=Phaeophyceae TaxID=2870 RepID=A0ELG5_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 1.950e-26
Identity = 55/62 (88.71%), Postives = 57/62 (91.94%), Query Frame = 1 
Query:    1 HLLAPPSRAPTALTTASYVFGGDVVSIGSKIAIMPINLSTGDFMVHHIHAFTLHVTVLILLK 186
            HLLAP S AP ALTTASYVFGGD+VSIGSKIAIMPI LST DFMVHHIHAFT+HVTVLILLK
Sbjct:  431 HLLAPGSTAPNALTTASYVFGGDIVSIGSKIAIMPIKLSTADFMVHHIHAFTIHVTVLILLK 492
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BLAST of mRNA_H-paniculata_contig19050.4775.1 vs. uniprot
Match: A1L0R0_9PHAE (Photosystem I P700 apoprotein A1 (Fragment) n=7 Tax=Ectocarpales TaxID=2877 RepID=A1L0R0_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 1.950e-26
Identity = 55/62 (88.71%), Postives = 57/62 (91.94%), Query Frame = 1 
Query:    1 HLLAPPSRAPTALTTASYVFGGDVVSIGSKIAIMPINLSTGDFMVHHIHAFTLHVTVLILLK 186
            HLLAP S AP ALTTASYVFGGD+VSIGSKIAIMPI LST DFMVHHIHAFT+HVTVLILLK
Sbjct:  431 HLLAPGSTAPNALTTASYVFGGDIVSIGSKIAIMPIKLSTADFMVHHIHAFTIHVTVLILLK 492
[Close]
BLAST of mRNA_H-paniculata_contig19050.4775.1 vs. uniprot
Match: A0ELH4_9PHAE (Photosystem I P700 Chl a apoprotein A1 (Fragment) n=1 Tax=Petalonia zosterifolia TaxID=87241 RepID=A0ELH4_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 1.950e-26
Identity = 55/62 (88.71%), Postives = 57/62 (91.94%), Query Frame = 1 
Query:    1 HLLAPPSRAPTALTTASYVFGGDVVSIGSKIAIMPINLSTGDFMVHHIHAFTLHVTVLILLK 186
            HLLAP S AP ALTTASYVFGGD+VSIGSKIAIMPI LST DFMVHHIHAFT+HVTVLILLK
Sbjct:  431 HLLAPGSTAPNALTTASYVFGGDIVSIGSKIAIMPIKLSTADFMVHHIHAFTIHVTVLILLK 492
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BLAST of mRNA_H-paniculata_contig19050.4775.1 vs. uniprot
Match: B6CWP9_9PHAE (PSI P700 chlorophyll a apoprotein A1 (Fragment) n=1 Tax=Heribaudiella fluviatilis TaxID=246117 RepID=B6CWP9_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 1.950e-26
Identity = 55/62 (88.71%), Postives = 57/62 (91.94%), Query Frame = 1 
Query:    1 HLLAPPSRAPTALTTASYVFGGDVVSIGSKIAIMPINLSTGDFMVHHIHAFTLHVTVLILLK 186
            HLLAP S AP ALTTASYVFGGD+VSIGSKIAIMPI LST DFMVHHIHAFT+HVTVLILLK
Sbjct:  431 HLLAPGSTAPNALTTASYVFGGDIVSIGSKIAIMPIKLSTADFMVHHIHAFTIHVTVLILLK 492
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BLAST of mRNA_H-paniculata_contig19050.4775.1 vs. uniprot
Match: U3SYE4_9PHAE (Photosystem I P700 chlorophyll a apoprotein A1 (Fragment) n=103 Tax=Phaeophyceae TaxID=2870 RepID=U3SYE4_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 2.230e-26
Identity = 55/62 (88.71%), Postives = 57/62 (91.94%), Query Frame = 1 
Query:    1 HLLAPPSRAPTALTTASYVFGGDVVSIGSKIAIMPINLSTGDFMVHHIHAFTLHVTVLILLK 186
            HLLAP S AP ALTTASYVFGGD+VSIGSKIAIMPI LST DFMVHHIHAFT+HVTVLILLK
Sbjct:  446 HLLAPSSTAPNALTTASYVFGGDIVSIGSKIAIMPIKLSTADFMVHHIHAFTIHVTVLILLK 507
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BLAST of mRNA_H-paniculata_contig19050.4775.1 vs. uniprot
Match: A0A8E4UPV3_9PHAE (Photosystem I P700 Chl a apoprotein A1 (Fragment) n=1 Tax=Colpomenia sinuosa TaxID=87236 RepID=A0A8E4UPV3_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 2.350e-26
Identity = 54/62 (87.10%), Postives = 57/62 (91.94%), Query Frame = 1 
Query:    1 HLLAPPSRAPTALTTASYVFGGDVVSIGSKIAIMPINLSTGDFMVHHIHAFTLHVTVLILLK 186
            HLLAP S AP ALTTASYVFGGD+VS+GSKIAIMPI LST DFMVHHIHAFT+HVTVLILLK
Sbjct:  396 HLLAPGSTAPNALTTASYVFGGDIVSVGSKIAIMPIKLSTADFMVHHIHAFTIHVTVLILLK 457
[Close]
BLAST of mRNA_H-paniculata_contig19050.4775.1 vs. uniprot
Match: D1H064_9PHAE (Photosystem I core protein A (Fragment) n=4 Tax=Ectocarpus TaxID=2879 RepID=D1H064_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 2.690e-26
Identity = 54/62 (87.10%), Postives = 57/62 (91.94%), Query Frame = 1 
Query:    1 HLLAPPSRAPTALTTASYVFGGDVVSIGSKIAIMPINLSTGDFMVHHIHAFTLHVTVLILLK 186
            HLLAP S AP ALTTASYVFGGD+VS+GSKIAIMPI LST DFMVHHIHAFT+HVTVLILLK
Sbjct:  431 HLLAPGSTAPNALTTASYVFGGDIVSVGSKIAIMPIKLSTADFMVHHIHAFTIHVTVLILLK 492
[Close]
BLAST of mRNA_H-paniculata_contig19050.4775.1 vs. uniprot
Match: Q5VK95_9PHAE (Photosystem I P700 Chl a apoprotein A1 (Fragment) n=16 Tax=Phaeophyceae TaxID=2870 RepID=Q5VK95_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 2.690e-26
Identity = 54/62 (87.10%), Postives = 57/62 (91.94%), Query Frame = 1 
Query:    1 HLLAPPSRAPTALTTASYVFGGDVVSIGSKIAIMPINLSTGDFMVHHIHAFTLHVTVLILLK 186
            HLLAP S AP ALTTASYVFGGD+VS+GSKIAIMPI LST DFMVHHIHAFT+HVTVLILLK
Sbjct:  431 HLLAPGSTAPNALTTASYVFGGDIVSVGSKIAIMPIKLSTADFMVHHIHAFTIHVTVLILLK 492
[Close]
BLAST of mRNA_H-paniculata_contig19050.4775.1 vs. uniprot
Match: A0A2U9IYZ8_9PHAE (Photosystem I P700 Chl a apoprotein A1 (Fragment) n=1 Tax=Tronoella ryukyuana TaxID=2203893 RepID=A0A2U9IYZ8_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 2.690e-26
Identity = 54/62 (87.10%), Postives = 57/62 (91.94%), Query Frame = 1 
Query:    1 HLLAPPSRAPTALTTASYVFGGDVVSIGSKIAIMPINLSTGDFMVHHIHAFTLHVTVLILLK 186
            HLLAP S AP ALTTASYVFGGD+VS+GSKIAIMPI LST DFMVHHIHAFT+HVTVLILLK
Sbjct:  431 HLLAPGSTAPNALTTASYVFGGDIVSVGSKIAIMPIKLSTADFMVHHIHAFTIHVTVLILLK 492
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19050.4775.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6S4QRE4_9PHAE1.490e-2688.71Photosystem I P700 apoprotein A1 (Fragment) n=3 Ta... [more]
A0ELG5_9PHAE1.950e-2688.71Photosystem I P700 Chl a apoprotein A1 (Fragment) ... [more]
A1L0R0_9PHAE1.950e-2688.71Photosystem I P700 apoprotein A1 (Fragment) n=7 Ta... [more]
A0ELH4_9PHAE1.950e-2688.71Photosystem I P700 Chl a apoprotein A1 (Fragment) ... [more]
B6CWP9_9PHAE1.950e-2688.71PSI P700 chlorophyll a apoprotein A1 (Fragment) n=... [more]
U3SYE4_9PHAE2.230e-2688.71Photosystem I P700 chlorophyll a apoprotein A1 (Fr... [more]
A0A8E4UPV3_9PHAE2.350e-2687.10Photosystem I P700 Chl a apoprotein A1 (Fragment) ... [more]
D1H064_9PHAE2.690e-2687.10Photosystem I core protein A (Fragment) n=4 Tax=Ec... [more]
Q5VK95_9PHAE2.690e-2687.10Photosystem I P700 Chl a apoprotein A1 (Fragment) ... [more]
A0A2U9IYZ8_9PHAE2.690e-2687.10Photosystem I P700 Chl a apoprotein A1 (Fragment) ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19050contigH-paniculata_contig19050:4..190 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score108.6
Seed ortholog evalue1.1e-21
Seed eggNOG ortholog2880.D1J7A3
Preferred namepsaA
KEGG koko:K02689,ko:K02690
KEGG Pathwayko00195,ko01100,map00195,map01100
KEGG ModuleM00163
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0016020,GO:0031976,GO:0031984,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035
EggNOG free text desc.chlorophyll binding
EggNOG OGs28JJ8@1,2QRYE@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko00194
Exons1
Model size189
Cds size186
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929459.9652183-CDS-H-paniculata_contig19050:3..1891622929459.9652183-CDS-H-paniculata_contig19050:3..189Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19050 4..189 +
1691480871.014012-CDS-H-paniculata_contig19050:3..1891691480871.014012-CDS-H-paniculata_contig19050:3..189Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19050 4..189 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19050.4775.1prot_H-paniculata_contig19050.4775.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19050 4..189 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19050.4775.1

>prot_H-paniculata_contig19050.4775.1 ID=prot_H-paniculata_contig19050.4775.1|Name=mRNA_H-paniculata_contig19050.4775.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=62bp
HLLAPPSRAPTALTTASYVFGGDVVSIGSKIAIMPINLSTGDFMVHHIHA
FTLHVTVLILLK
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mRNA from alignment at H-paniculata_contig19050:4..190+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19050.4775.1 ID=mRNA_H-paniculata_contig19050.4775.1|Name=mRNA_H-paniculata_contig19050.4775.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=187bp|location=Sequence derived from alignment at H-paniculata_contig19050:4..190+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CATTTACTAGCCCCGCCCAGTAGGGCCCCAACAGCTTTAACAACGGCTAG
CTATGTATTTGGTGGAGATGTAGTATCGATTGGATCTAAAATTGCAATAA
TGCCTATAAACTTAAGTACGGGTGATTTTATGGTACACCATATACATGCA
TTTACTCTTCATGTAACAGTTTTAATTTTATTAAAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig19050:4..190+

>mRNA_H-paniculata_contig19050.4775.1 ID=mRNA_H-paniculata_contig19050.4775.1|Name=mRNA_H-paniculata_contig19050.4775.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=372bp|location=Sequence derived from alignment at H-paniculata_contig19050:4..190+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CATTTACTAGCCCCGCCCAGTAGGGCCCCAACAGCTTTAACAACGGCTAG
CTATGTATTTGGTGGAGATGTAGTATCGATTGGATCTAAAATTGCAATAA
TGCCTATAAACTTAAGTACGGGTGATTTTATGGTACACCATATACATGCA
TTTACTCTTCATGTAACAGTTTTAATTTTATTAAAACATTTACTAGCCCC
GCCCAGTAGGGCCCCAACAGCTTTAACAACGGCTAGCTATGTATTTGGTG
GAGATGTAGTATCGATTGGATCTAAAATTGCAATAATGCCTATAAACTTA
AGTACGGGTGATTTTATGGTACACCATATACATGCATTTACTCTTCATGT
AACAGTTTTAATTTTATTAAAA
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