prot_H-paniculata_contig19042.4772.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig19042.4772.1
Unique Nameprot_H-paniculata_contig19042.4772.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length113
Homology
BLAST of mRNA_H-paniculata_contig19042.4772.1 vs. uniprot
Match: W7TJ26_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJ26_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 1.240e-17
Identity = 47/99 (47.47%), Postives = 63/99 (63.64%), Query Frame = 0
Query:    1 MDVDAAYLNAPVEEELFDKPPP---EFSPFSGDIPFVCRLRKCLQGLKQSGRNWNNPLDDFLVGIGLDRSTTDSCLYFSRDEGEETNLLVVVYVDDQVI 96
            MDVD AYL + +EE+++ K PP   ++ P  G++  VCRLRK L GLKQSGRNW+  +D +  G GL  S  D CLY       E  L++V+YVDD +I
Sbjct:  304 MDVDTAYLQSDLEEKVYIKQPPGYEKYGPNGGEL--VCRLRKSLYGLKQSGRNWHKKIDGWFRGYGLHPSYADPCLYVKFASSGEI-LVIVLYVDDLII 399          
BLAST of mRNA_H-paniculata_contig19042.4772.1 vs. uniprot
Match: A0A182GFZ6_AEDAL (Integrase catalytic domain-containing protein n=2 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GFZ6_AEDAL)

HSP 1 Score: 86.3 bits (212), Expect = 2.370e-17
Identity = 49/107 (45.79%), Postives = 65/107 (60.75%), Query Frame = 0
Query:    1 MDVDAAYLNAPVEEELFDKPPPEFSPFSGDIPFVCRLRKCLQGLKQSGRNWNNPLDDFLVGIGLDRSTTDSCLYFSRDEGEETNLLVVVYVDDQVIDHRCEKVEKFD 107
            +D+ +AYL A +EE++F + PP F   SG+   VCRL+KCL GLKQS R WN  +D F   IG    + DSCLY     G+  +  +VVYVDD VI   C   E+F+
Sbjct:  574 LDIKSAYLYAELEEDIFMRQPPGFQ--SGNNK-VCRLKKCLYGLKQSARVWNKKIDMFFKSIGFLPGSADSCLYVREKNGK--HCFIVVYVDDMVI--FCNSEEEFN 673          
BLAST of mRNA_H-paniculata_contig19042.4772.1 vs. uniprot
Match: W7TCB8_9STRA (Gag-pol polyprotein n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TCB8_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 4.980e-17
Identity = 48/108 (44.44%), Postives = 64/108 (59.26%), Query Frame = 0
Query:    1 MDVDAAYLNAPVEEELFDKPPPEFSPF-SGDIPFVCRLRKCLQGLKQSGRNWNNPLDDFLVGIGLDRSTTDSCLYFSRDEGEETNLLVVVYVDDQVIDHRC-EKVEKF 106
            MDV+ AYL + +EE+++ K PP +  + S     VCRLRK L GLKQSGRNW+  +D +  G G   S+ D CLY       E  L++V+YVDD +I     E V KF
Sbjct:   84 MDVEPAYLQSDLEEKVYVKQPPGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEI-LVIVLYVDDLIITSNSREMVGKF 190          
BLAST of mRNA_H-paniculata_contig19042.4772.1 vs. uniprot
Match: W7TII5_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TII5_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 5.140e-17
Identity = 44/97 (45.36%), Postives = 59/97 (60.82%), Query Frame = 0
Query:    1 MDVDAAYLNAPVEEELFDKPPPEFSPFSGD-IPFVCRLRKCLQGLKQSGRNWNNPLDDFLVGIGLDRSTTDSCLYFSRDEGEETNLLVVVYVDDQVI 96
            MDVD AYL + +EE+++ K PP +     +    VCRLRK L GLKQSGRNW+  +D +  G G   S+ D CLY       E  L++V+YVDD +I
Sbjct:   84 MDVDTAYLQSDLEEKIYVKQPPGYEQCGPNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHSSSADPCLYVKFGSSGEM-LVIVLYVDDLII 179          
BLAST of mRNA_H-paniculata_contig19042.4772.1 vs. uniprot
Match: A0A7D9HG25_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HG25_PARCT)

HSP 1 Score: 84.7 bits (208), Expect = 7.070e-17
Identity = 45/108 (41.67%), Postives = 69/108 (63.89%), Query Frame = 0
Query:    1 MDVDAAYLNAPVEEELFDKPPPEFSPFSGD-IPFVCRLRKCLQGLKQSGRNWNNPLDDFLVGIGLDRSTTDSCLYFSRDEGEETNLLVVVYVDDQVI-DHRCEKVEKF 106
            MDV  A+L+AP++ E+F + P  F   S + +  V RL+K L GLKQSGRNWN  LD++L+  G  R+  D C+Y  +  GE+  ++VV++VDD +I     +K+ +F
Sbjct:  254 MDVKTAFLHAPIDHEIFMEQPMGFEELSENGVKLVYRLKKSLYGLKQSGRNWNRVLDEYLISDGFVRNPVDHCVY-QKQTGEDI-IIVVIWVDDLIIASSNTDKIRQF 359          
BLAST of mRNA_H-paniculata_contig19042.4772.1 vs. uniprot
Match: W7T174_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T174_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 1.120e-16
Identity = 46/99 (46.46%), Postives = 62/99 (62.63%), Query Frame = 0
Query:    1 MDVDAAYLNAPVEEELFDKPP---PEFSPFSGDIPFVCRLRKCLQGLKQSGRNWNNPLDDFLVGIGLDRSTTDSCLYFSRDEGEETNLLVVVYVDDQVI 96
            MDVD AYL + +EE+++ K P    ++ P  G++  VCRLRK L GLKQSGRNW+  +D +  G G   S+ D CLY       E  L+VV+YVDD +I
Sbjct:  602 MDVDTAYLQSDLEEKVYIKQPHGYEKYGPNGGEL--VCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEM-LVVVLYVDDLII 697          
BLAST of mRNA_H-paniculata_contig19042.4772.1 vs. uniprot
Match: A0A4Q3EC79_9SPHI (Transposon Pol polyprotein (Fragment) n=1 Tax=Sphingobacteriaceae bacterium TaxID=2021370 RepID=A0A4Q3EC79_9SPHI)

HSP 1 Score: 84.0 bits (206), Expect = 1.270e-16
Identity = 43/104 (41.35%), Postives = 67/104 (64.42%), Query Frame = 0
Query:    1 MDVDAAYLNAPVEEELFDKPPPEFSPFSGDIPFVCRLRKCLQGLKQSGRNWNNPLDDFLVGIGLDRSTTDSCLYFSRDEGEETNLLVVVYVDDQVI--DHRCEK 102
            MD  +A+LN P+ E+++ + PP F   S     VC+L+K + GLKQSGRNWN  L+  L+  GL R  +D C+Y +R+ G    ++V+V+VDD +I  + +CE+
Sbjct:   55 MDAVSAFLNGPLNEDVYMEQPPNFEDKSNR---VCKLKKSIYGLKQSGRNWNQLLNQTLIDFGLKRCLSDQCIYVARNSGNI--MIVMVWVDDVLIACNQKCEE 153          
BLAST of mRNA_H-paniculata_contig19042.4772.1 vs. uniprot
Match: A0A6S7HT97_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HT97_PARCT)

HSP 1 Score: 83.6 bits (205), Expect = 1.960e-16
Identity = 46/98 (46.94%), Postives = 63/98 (64.29%), Query Frame = 0
Query:    1 MDVDAAYLNAPVEEELFDKPPPEFSPFS--GDIPFVCRLRKCLQGLKQSGRNWNNPLDDFLVGIGLDRSTTDSCLYFSRDEGEETNLLVVVYVDDQVI 96
            MDV  AYLNAPV+ EL+ + P  F   S  G++  VC+L K L GLKQSGRNWN+ L  FL   G+ +  +D C+Y  +  G++T LL+  +VDD +I
Sbjct:   16 MDVKTAYLNAPVDCELYIEQPEGFVKHSESGEM-LVCKLNKSLYGLKQSGRNWNHMLHTFLTSKGITQLVSDPCVYIKKQNGKKTILLI--WVDDIII 110          
BLAST of mRNA_H-paniculata_contig19042.4772.1 vs. uniprot
Match: A0A6S7IT23_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7IT23_PARCT)

HSP 1 Score: 83.6 bits (205), Expect = 2.040e-16
Identity = 46/98 (46.94%), Postives = 63/98 (64.29%), Query Frame = 0
Query:    1 MDVDAAYLNAPVEEELFDKPPPEFSPFS--GDIPFVCRLRKCLQGLKQSGRNWNNPLDDFLVGIGLDRSTTDSCLYFSRDEGEETNLLVVVYVDDQVI 96
            MDV  AYLNAPV+ EL+ + P  F   S  G++  VC+L K L GLKQSGRNWN+ L  FL   G+ +  +D C+Y  +  G++T LL+  +VDD +I
Sbjct:  323 MDVKTAYLNAPVDCELYIEQPEGFVKHSESGEM-LVCKLNKSLYGLKQSGRNWNHMLHTFLTSKGITQLVSDPCVYIKKQNGKKTILLI--WVDDIII 417          
BLAST of mRNA_H-paniculata_contig19042.4772.1 vs. uniprot
Match: A0A6S7HLY2_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HLY2_PARCT)

HSP 1 Score: 83.2 bits (204), Expect = 2.740e-16
Identity = 44/108 (40.74%), Postives = 68/108 (62.96%), Query Frame = 0
Query:    1 MDVDAAYLNAPVEEELFDKPPPEFSPFSGD-IPFVCRLRKCLQGLKQSGRNWNNPLDDFLVGIGLDRSTTDSCLYFSRDEGEETNLLVVVYVDDQVI-DHRCEKVEKF 106
            MDV  A+L+ P++ E+F + P  F   S + +  V RL+K L GLKQSGRNWN  LD++L+  G  R+  D C+Y  +  GE+  ++VV++VDD +I     +K+ +F
Sbjct:  279 MDVKTAFLHVPIDHEIFMEQPMGFEELSENGVKLVYRLKKSLYGLKQSGRNWNRVLDEYLISDGFIRNPVDHCVY-QKQTGEDI-IIVVIWVDDLIIASSNTDKISQF 384          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19042.4772.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W7TJ26_9STRA1.240e-1747.47Gag-pol polyprotein n=2 Tax=Nannochloropsis gadita... [more]
A0A182GFZ6_AEDAL2.370e-1745.79Integrase catalytic domain-containing protein n=2 ... [more]
W7TCB8_9STRA4.980e-1744.44Gag-pol polyprotein n=3 Tax=Nannochloropsis gadita... [more]
W7TII5_9STRA5.140e-1745.36Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]
A0A7D9HG25_PARCT7.070e-1741.67Reverse transcriptase Ty1/copia-type domain-contai... [more]
W7T174_9STRA1.120e-1646.46Gag-pol polyprotein n=2 Tax=Nannochloropsis gadita... [more]
A0A4Q3EC79_9SPHI1.270e-1641.35Transposon Pol polyprotein (Fragment) n=1 Tax=Sphi... [more]
A0A6S7HT97_PARCT1.960e-1646.94Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A6S7IT23_PARCT2.040e-1646.94Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A6S7HLY2_PARCT2.740e-1640.74Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 1..98
e-value: 9.5E-21
score: 74.5

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19042contigH-paniculata_contig19042:233..571 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19042.4772.1mRNA_H-paniculata_contig19042.4772.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig19042 212..571 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig19042.4772.1 ID=prot_H-paniculata_contig19042.4772.1|Name=mRNA_H-paniculata_contig19042.4772.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=113bp
MDVDAAYLNAPVEEELFDKPPPEFSPFSGDIPFVCRLRKCLQGLKQSGRN
WNNPLDDFLVGIGLDRSTTDSCLYFSRDEGEETNLLVVVYVDDQVIDHRC
EKVEKFDIEGKC*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2