mRNA_H-paniculata_contig19042.4772.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig19042.4772.1 vs. uniprot
Match: W7TJ26_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJ26_9STRA) HSP 1 Score: 92.8 bits (229), Expect = 1.520e-19 Identity = 50/105 (47.62%), Postives = 67/105 (63.81%), Query Frame = 1
Query: 4 DFELEGMDVDAAYLNAPVEEELFDKPPP---EFSPFSGDIPFVCRLRKCLQGLKQSGRNWNNPLDDFLVGIGLDRSTTDSCLYFSRDEGEETNLLVVVYVDDQVI 309
D EL+ MDVD AYL + +EE+++ K PP ++ P G++ VCRLRK L GLKQSGRNW+ +D + G GL S D CLY E L++V+YVDD +I
Sbjct: 298 DLELDNMDVDTAYLQSDLEEKVYIKQPPGYEKYGPNGGEL--VCRLRKSLYGLKQSGRNWHKKIDGWFRGYGLHPSYADPCLYVKFASSGEI-LVIVLYVDDLII 399
BLAST of mRNA_H-paniculata_contig19042.4772.1 vs. uniprot
Match: W7TII5_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TII5_9STRA) HSP 1 Score: 89.7 bits (221), Expect = 4.570e-19 Identity = 47/103 (45.63%), Postives = 63/103 (61.17%), Query Frame = 1
Query: 4 DFELEGMDVDAAYLNAPVEEELFDKPPPEFSPFSGD-IPFVCRLRKCLQGLKQSGRNWNNPLDDFLVGIGLDRSTTDSCLYFSRDEGEETNLLVVVYVDDQVI 309
D EL+ MDVD AYL + +EE+++ K PP + + VCRLRK L GLKQSGRNW+ +D + G G S+ D CLY E L++V+YVDD +I
Sbjct: 78 DLELDNMDVDTAYLQSDLEEKIYVKQPPGYEQCGPNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHSSSADPCLYVKFGSSGEM-LVIVLYVDDLII 179
BLAST of mRNA_H-paniculata_contig19042.4772.1 vs. uniprot
Match: W7TCB8_9STRA (Gag-pol polyprotein n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TCB8_9STRA) HSP 1 Score: 90.9 bits (224), Expect = 5.540e-19 Identity = 51/114 (44.74%), Postives = 68/114 (59.65%), Query Frame = 1
Query: 4 DFELEGMDVDAAYLNAPVEEELFDKPPPEFSPF-SGDIPFVCRLRKCLQGLKQSGRNWNNPLDDFLVGIGLDRSTTDSCLYFSRDEGEETNLLVVVYVDDQVIDHRC-EKVEKF 339
D EL+ MDV+ AYL + +EE+++ K PP + + S VCRLRK L GLKQSGRNW+ +D + G G S+ D CLY E L++V+YVDD +I E V KF
Sbjct: 78 DLELDNMDVEPAYLQSDLEEKVYVKQPPGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEI-LVIVLYVDDLIITSNSREMVGKF 190
BLAST of mRNA_H-paniculata_contig19042.4772.1 vs. uniprot
Match: W7T174_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T174_9STRA) HSP 1 Score: 90.1 bits (222), Expect = 1.380e-18 Identity = 49/105 (46.67%), Postives = 66/105 (62.86%), Query Frame = 1
Query: 4 DFELEGMDVDAAYLNAPVEEELFDKPP---PEFSPFSGDIPFVCRLRKCLQGLKQSGRNWNNPLDDFLVGIGLDRSTTDSCLYFSRDEGEETNLLVVVYVDDQVI 309
D EL+ MDVD AYL + +EE+++ K P ++ P G++ VCRLRK L GLKQSGRNW+ +D + G G S+ D CLY E L+VV+YVDD +I
Sbjct: 596 DLELDNMDVDTAYLQSDLEEKVYIKQPHGYEKYGPNGGEL--VCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEM-LVVVLYVDDLII 697
BLAST of mRNA_H-paniculata_contig19042.4772.1 vs. uniprot
Match: W7T0T3_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T0T3_9STRA) HSP 1 Score: 88.2 bits (217), Expect = 6.470e-18 Identity = 50/114 (43.86%), Postives = 67/114 (58.77%), Query Frame = 1
Query: 4 DFELEGMDVDAAYLNAPVEEELFDKPPPEFSPF-SGDIPFVCRLRKCLQGLKQSGRNWNNPLDDFLVGIGLDRSTTDSCLYFSRDEGEETNLLVVVYVDDQVIDHRC-EKVEKF 339
D EL+ MDV+ AYL + +EE+++ K P + + S VCRLRK L GLKQSGRNW+ +D + G G S+ D CLY E L++V+YVDD +I E V KF
Sbjct: 518 DLELDNMDVETAYLQSDLEEKVYVKQPIGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEI-LVIVLYVDDLIITSNSREMVNKF 630
BLAST of mRNA_H-paniculata_contig19042.4772.1 vs. uniprot
Match: W7TIM1_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIM1_9STRA) HSP 1 Score: 87.4 bits (215), Expect = 1.210e-17 Identity = 49/114 (42.98%), Postives = 67/114 (58.77%), Query Frame = 1
Query: 4 DFELEGMDVDAAYLNAPVEEELFDKPPPEFSPFS-GDIPFVCRLRKCLQGLKQSGRNWNNPLDDFLVGIGLDRSTTDSCLYFSRDEGEETNLLVVVYVDDQVIDHRC-EKVEKF 339
D EL+ MDV+ AYL + +EE+++ K P + + VCRLRK L GLKQSGRNW+ +D + G G S+ D CLY E L++V+YVDD +I E V+KF
Sbjct: 307 DLELDNMDVETAYLQSDLEEKVYVKQPIGYEQYGLNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEM-LVIVLYVDDLIITSNSREMVDKF 419
BLAST of mRNA_H-paniculata_contig19042.4772.1 vs. uniprot
Match: A0A6S7HT97_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HT97_PARCT) HSP 1 Score: 86.7 bits (213), Expect = 2.090e-17 Identity = 48/104 (46.15%), Postives = 66/104 (63.46%), Query Frame = 1
Query: 4 DFELEGMDVDAAYLNAPVEEELFDKPPPEFSPFS--GDIPFVCRLRKCLQGLKQSGRNWNNPLDDFLVGIGLDRSTTDSCLYFSRDEGEETNLLVVVYVDDQVI 309
D E+ MDV AYLNAPV+ EL+ + P F S G++ VC+L K L GLKQSGRNWN+ L FL G+ + +D C+Y + G++T LL+ +VDD +I
Sbjct: 10 DMEVHQMDVKTAYLNAPVDCELYIEQPEGFVKHSESGEM-LVCKLNKSLYGLKQSGRNWNHMLHTFLTSKGITQLVSDPCVYIKKQNGKKTILLI--WVDDIII 110
BLAST of mRNA_H-paniculata_contig19042.4772.1 vs. uniprot
Match: A0A6S7IT23_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7IT23_PARCT) HSP 1 Score: 86.7 bits (213), Expect = 2.190e-17 Identity = 48/104 (46.15%), Postives = 66/104 (63.46%), Query Frame = 1
Query: 4 DFELEGMDVDAAYLNAPVEEELFDKPPPEFSPFS--GDIPFVCRLRKCLQGLKQSGRNWNNPLDDFLVGIGLDRSTTDSCLYFSRDEGEETNLLVVVYVDDQVI 309
D E+ MDV AYLNAPV+ EL+ + P F S G++ VC+L K L GLKQSGRNWN+ L FL G+ + +D C+Y + G++T LL+ +VDD +I
Sbjct: 317 DMEVHQMDVKTAYLNAPVDCELYIEQPEGFVKHSESGEM-LVCKLNKSLYGLKQSGRNWNHMLHTFLTSKGITQLVSDPCVYIKKQNGKKTILLI--WVDDIII 417
BLAST of mRNA_H-paniculata_contig19042.4772.1 vs. uniprot
Match: A0A182GFZ6_AEDAL (Integrase catalytic domain-containing protein n=2 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GFZ6_AEDAL) HSP 1 Score: 86.7 bits (213), Expect = 2.250e-17 Identity = 49/107 (45.79%), Postives = 65/107 (60.75%), Query Frame = 1
Query: 22 MDVDAAYLNAPVEEELFDKPPPEFSPFSGDIPFVCRLRKCLQGLKQSGRNWNNPLDDFLVGIGLDRSTTDSCLYFSRDEGEETNLLVVVYVDDQVIDHRCEKVEKFD 342
+D+ +AYL A +EE++F + PP F SG+ VCRL+KCL GLKQS R WN +D F IG + DSCLY G+ + +VVYVDD VI C E+F+
Sbjct: 574 LDIKSAYLYAELEEDIFMRQPPGFQ--SGNNK-VCRLKKCLYGLKQSARVWNKKIDMFFKSIGFLPGSADSCLYVREKNGK--HCFIVVYVDDMVI--FCNSEEEFN 673
BLAST of mRNA_H-paniculata_contig19042.4772.1 vs. uniprot
Match: A0A4Q3EC79_9SPHI (Transposon Pol polyprotein (Fragment) n=1 Tax=Sphingobacteriaceae bacterium TaxID=2021370 RepID=A0A4Q3EC79_9SPHI) HSP 1 Score: 85.9 bits (211), Expect = 3.370e-17 Identity = 45/110 (40.91%), Postives = 69/110 (62.73%), Query Frame = 1
Query: 4 DFELEGMDVDAAYLNAPVEEELFDKPPPEFSPFSGDIPFVCRLRKCLQGLKQSGRNWNNPLDDFLVGIGLDRSTTDSCLYFSRDEGEETNLLVVVYVDDQVI--DHRCEK 327
D L MD +A+LN P+ E+++ + PP F S VC+L+K + GLKQSGRNWN L+ L+ GL R +D C+Y +R+ G ++V+V+VDD +I + +CE+
Sbjct: 49 DLHLTQMDAVSAFLNGPLNEDVYMEQPPNFEDKSNR---VCKLKKSIYGLKQSGRNWNQLLNQTLIDFGLKRCLSDQCIYVARNSGNI--MIVMVWVDDVLIACNQKCEE 153 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19042.4772.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig19042.4772.1 >prot_H-paniculata_contig19042.4772.1 ID=prot_H-paniculata_contig19042.4772.1|Name=mRNA_H-paniculata_contig19042.4772.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=113bp MDVDAAYLNAPVEEELFDKPPPEFSPFSGDIPFVCRLRKCLQGLKQSGRNback to top mRNA from alignment at H-paniculata_contig19042:212..571+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig19042.4772.1 ID=mRNA_H-paniculata_contig19042.4772.1|Name=mRNA_H-paniculata_contig19042.4772.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=360bp|location=Sequence derived from alignment at H-paniculata_contig19042:212..571+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig19042:212..571+ >mRNA_H-paniculata_contig19042.4772.1 ID=mRNA_H-paniculata_contig19042.4772.1|Name=mRNA_H-paniculata_contig19042.4772.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=678bp|location=Sequence derived from alignment at H-paniculata_contig19042:212..571+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |