mRNA_H-paniculata_contig19042.4772.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19042.4772.1
Unique NamemRNA_H-paniculata_contig19042.4772.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig19042.4772.1 vs. uniprot
Match: W7TJ26_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJ26_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.520e-19
Identity = 50/105 (47.62%), Postives = 67/105 (63.81%), Query Frame = 1
Query:    4 DFELEGMDVDAAYLNAPVEEELFDKPPP---EFSPFSGDIPFVCRLRKCLQGLKQSGRNWNNPLDDFLVGIGLDRSTTDSCLYFSRDEGEETNLLVVVYVDDQVI 309
            D EL+ MDVD AYL + +EE+++ K PP   ++ P  G++  VCRLRK L GLKQSGRNW+  +D +  G GL  S  D CLY       E  L++V+YVDD +I
Sbjct:  298 DLELDNMDVDTAYLQSDLEEKVYIKQPPGYEKYGPNGGEL--VCRLRKSLYGLKQSGRNWHKKIDGWFRGYGLHPSYADPCLYVKFASSGEI-LVIVLYVDDLII 399          
BLAST of mRNA_H-paniculata_contig19042.4772.1 vs. uniprot
Match: W7TII5_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TII5_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 4.570e-19
Identity = 47/103 (45.63%), Postives = 63/103 (61.17%), Query Frame = 1
Query:    4 DFELEGMDVDAAYLNAPVEEELFDKPPPEFSPFSGD-IPFVCRLRKCLQGLKQSGRNWNNPLDDFLVGIGLDRSTTDSCLYFSRDEGEETNLLVVVYVDDQVI 309
            D EL+ MDVD AYL + +EE+++ K PP +     +    VCRLRK L GLKQSGRNW+  +D +  G G   S+ D CLY       E  L++V+YVDD +I
Sbjct:   78 DLELDNMDVDTAYLQSDLEEKIYVKQPPGYEQCGPNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHSSSADPCLYVKFGSSGEM-LVIVLYVDDLII 179          
BLAST of mRNA_H-paniculata_contig19042.4772.1 vs. uniprot
Match: W7TCB8_9STRA (Gag-pol polyprotein n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TCB8_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 5.540e-19
Identity = 51/114 (44.74%), Postives = 68/114 (59.65%), Query Frame = 1
Query:    4 DFELEGMDVDAAYLNAPVEEELFDKPPPEFSPF-SGDIPFVCRLRKCLQGLKQSGRNWNNPLDDFLVGIGLDRSTTDSCLYFSRDEGEETNLLVVVYVDDQVIDHRC-EKVEKF 339
            D EL+ MDV+ AYL + +EE+++ K PP +  + S     VCRLRK L GLKQSGRNW+  +D +  G G   S+ D CLY       E  L++V+YVDD +I     E V KF
Sbjct:   78 DLELDNMDVEPAYLQSDLEEKVYVKQPPGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEI-LVIVLYVDDLIITSNSREMVGKF 190          
BLAST of mRNA_H-paniculata_contig19042.4772.1 vs. uniprot
Match: W7T174_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T174_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 1.380e-18
Identity = 49/105 (46.67%), Postives = 66/105 (62.86%), Query Frame = 1
Query:    4 DFELEGMDVDAAYLNAPVEEELFDKPP---PEFSPFSGDIPFVCRLRKCLQGLKQSGRNWNNPLDDFLVGIGLDRSTTDSCLYFSRDEGEETNLLVVVYVDDQVI 309
            D EL+ MDVD AYL + +EE+++ K P    ++ P  G++  VCRLRK L GLKQSGRNW+  +D +  G G   S+ D CLY       E  L+VV+YVDD +I
Sbjct:  596 DLELDNMDVDTAYLQSDLEEKVYIKQPHGYEKYGPNGGEL--VCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEM-LVVVLYVDDLII 697          
BLAST of mRNA_H-paniculata_contig19042.4772.1 vs. uniprot
Match: W7T0T3_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T0T3_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 6.470e-18
Identity = 50/114 (43.86%), Postives = 67/114 (58.77%), Query Frame = 1
Query:    4 DFELEGMDVDAAYLNAPVEEELFDKPPPEFSPF-SGDIPFVCRLRKCLQGLKQSGRNWNNPLDDFLVGIGLDRSTTDSCLYFSRDEGEETNLLVVVYVDDQVIDHRC-EKVEKF 339
            D EL+ MDV+ AYL + +EE+++ K P  +  + S     VCRLRK L GLKQSGRNW+  +D +  G G   S+ D CLY       E  L++V+YVDD +I     E V KF
Sbjct:  518 DLELDNMDVETAYLQSDLEEKVYVKQPIGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEI-LVIVLYVDDLIITSNSREMVNKF 630          
BLAST of mRNA_H-paniculata_contig19042.4772.1 vs. uniprot
Match: W7TIM1_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIM1_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 1.210e-17
Identity = 49/114 (42.98%), Postives = 67/114 (58.77%), Query Frame = 1
Query:    4 DFELEGMDVDAAYLNAPVEEELFDKPPPEFSPFS-GDIPFVCRLRKCLQGLKQSGRNWNNPLDDFLVGIGLDRSTTDSCLYFSRDEGEETNLLVVVYVDDQVIDHRC-EKVEKF 339
            D EL+ MDV+ AYL + +EE+++ K P  +  +       VCRLRK L GLKQSGRNW+  +D +  G G   S+ D CLY       E  L++V+YVDD +I     E V+KF
Sbjct:  307 DLELDNMDVETAYLQSDLEEKVYVKQPIGYEQYGLNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEM-LVIVLYVDDLIITSNSREMVDKF 419          
BLAST of mRNA_H-paniculata_contig19042.4772.1 vs. uniprot
Match: A0A6S7HT97_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HT97_PARCT)

HSP 1 Score: 86.7 bits (213), Expect = 2.090e-17
Identity = 48/104 (46.15%), Postives = 66/104 (63.46%), Query Frame = 1
Query:    4 DFELEGMDVDAAYLNAPVEEELFDKPPPEFSPFS--GDIPFVCRLRKCLQGLKQSGRNWNNPLDDFLVGIGLDRSTTDSCLYFSRDEGEETNLLVVVYVDDQVI 309
            D E+  MDV  AYLNAPV+ EL+ + P  F   S  G++  VC+L K L GLKQSGRNWN+ L  FL   G+ +  +D C+Y  +  G++T LL+  +VDD +I
Sbjct:   10 DMEVHQMDVKTAYLNAPVDCELYIEQPEGFVKHSESGEM-LVCKLNKSLYGLKQSGRNWNHMLHTFLTSKGITQLVSDPCVYIKKQNGKKTILLI--WVDDIII 110          
BLAST of mRNA_H-paniculata_contig19042.4772.1 vs. uniprot
Match: A0A6S7IT23_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7IT23_PARCT)

HSP 1 Score: 86.7 bits (213), Expect = 2.190e-17
Identity = 48/104 (46.15%), Postives = 66/104 (63.46%), Query Frame = 1
Query:    4 DFELEGMDVDAAYLNAPVEEELFDKPPPEFSPFS--GDIPFVCRLRKCLQGLKQSGRNWNNPLDDFLVGIGLDRSTTDSCLYFSRDEGEETNLLVVVYVDDQVI 309
            D E+  MDV  AYLNAPV+ EL+ + P  F   S  G++  VC+L K L GLKQSGRNWN+ L  FL   G+ +  +D C+Y  +  G++T LL+  +VDD +I
Sbjct:  317 DMEVHQMDVKTAYLNAPVDCELYIEQPEGFVKHSESGEM-LVCKLNKSLYGLKQSGRNWNHMLHTFLTSKGITQLVSDPCVYIKKQNGKKTILLI--WVDDIII 417          
BLAST of mRNA_H-paniculata_contig19042.4772.1 vs. uniprot
Match: A0A182GFZ6_AEDAL (Integrase catalytic domain-containing protein n=2 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GFZ6_AEDAL)

HSP 1 Score: 86.7 bits (213), Expect = 2.250e-17
Identity = 49/107 (45.79%), Postives = 65/107 (60.75%), Query Frame = 1
Query:   22 MDVDAAYLNAPVEEELFDKPPPEFSPFSGDIPFVCRLRKCLQGLKQSGRNWNNPLDDFLVGIGLDRSTTDSCLYFSRDEGEETNLLVVVYVDDQVIDHRCEKVEKFD 342
            +D+ +AYL A +EE++F + PP F   SG+   VCRL+KCL GLKQS R WN  +D F   IG    + DSCLY     G+  +  +VVYVDD VI   C   E+F+
Sbjct:  574 LDIKSAYLYAELEEDIFMRQPPGFQ--SGNNK-VCRLKKCLYGLKQSARVWNKKIDMFFKSIGFLPGSADSCLYVREKNGK--HCFIVVYVDDMVI--FCNSEEEFN 673          
BLAST of mRNA_H-paniculata_contig19042.4772.1 vs. uniprot
Match: A0A4Q3EC79_9SPHI (Transposon Pol polyprotein (Fragment) n=1 Tax=Sphingobacteriaceae bacterium TaxID=2021370 RepID=A0A4Q3EC79_9SPHI)

HSP 1 Score: 85.9 bits (211), Expect = 3.370e-17
Identity = 45/110 (40.91%), Postives = 69/110 (62.73%), Query Frame = 1
Query:    4 DFELEGMDVDAAYLNAPVEEELFDKPPPEFSPFSGDIPFVCRLRKCLQGLKQSGRNWNNPLDDFLVGIGLDRSTTDSCLYFSRDEGEETNLLVVVYVDDQVI--DHRCEK 327
            D  L  MD  +A+LN P+ E+++ + PP F   S     VC+L+K + GLKQSGRNWN  L+  L+  GL R  +D C+Y +R+ G    ++V+V+VDD +I  + +CE+
Sbjct:   49 DLHLTQMDAVSAFLNGPLNEDVYMEQPPNFEDKSNR---VCKLKKSIYGLKQSGRNWNQLLNQTLIDFGLKRCLSDQCIYVARNSGNI--MIVMVWVDDVLIACNQKCEE 153          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19042.4772.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W7TJ26_9STRA1.520e-1947.62Gag-pol polyprotein n=2 Tax=Nannochloropsis gadita... [more]
W7TII5_9STRA4.570e-1945.63Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]
W7TCB8_9STRA5.540e-1944.74Gag-pol polyprotein n=3 Tax=Nannochloropsis gadita... [more]
W7T174_9STRA1.380e-1846.67Gag-pol polyprotein n=2 Tax=Nannochloropsis gadita... [more]
W7T0T3_9STRA6.470e-1843.86Gag-pol polyprotein n=2 Tax=Nannochloropsis gadita... [more]
W7TIM1_9STRA1.210e-1742.98Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]
A0A6S7HT97_PARCT2.090e-1746.15Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A6S7IT23_PARCT2.190e-1746.15Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A182GFZ6_AEDAL2.250e-1745.79Integrase catalytic domain-containing protein n=2 ... [more]
A0A4Q3EC79_9SPHI3.370e-1740.91Transposon Pol polyprotein (Fragment) n=1 Tax=Sphi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19042contigH-paniculata_contig19042:212..571 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score78.2
Seed ortholog evalue2.8e-12
Seed eggNOG ortholog67593.Physo141588
Hectar predicted targeting categoryother localisation
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs3QHJF@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size360
Cds size339
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929459.4017608-UTR-H-paniculata_contig19042:211..2321622929459.4017608-UTR-H-paniculata_contig19042:211..232Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19042 212..232 +
1691480870.7504508-UTR-H-paniculata_contig19042:211..2321691480870.7504508-UTR-H-paniculata_contig19042:211..232Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19042 212..232 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929459.420503-CDS-H-paniculata_contig19042:232..5711622929459.420503-CDS-H-paniculata_contig19042:232..571Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19042 233..571 +
1691480870.761519-CDS-H-paniculata_contig19042:232..5711691480870.761519-CDS-H-paniculata_contig19042:232..571Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19042 233..571 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19042.4772.1prot_H-paniculata_contig19042.4772.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19042 233..571 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19042.4772.1

>prot_H-paniculata_contig19042.4772.1 ID=prot_H-paniculata_contig19042.4772.1|Name=mRNA_H-paniculata_contig19042.4772.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=113bp
MDVDAAYLNAPVEEELFDKPPPEFSPFSGDIPFVCRLRKCLQGLKQSGRN
WNNPLDDFLVGIGLDRSTTDSCLYFSRDEGEETNLLVVVYVDDQVIDHRC
EKVEKFDIEGKC*
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mRNA from alignment at H-paniculata_contig19042:212..571+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19042.4772.1 ID=mRNA_H-paniculata_contig19042.4772.1|Name=mRNA_H-paniculata_contig19042.4772.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=360bp|location=Sequence derived from alignment at H-paniculata_contig19042:212..571+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACAGATTTCGAATTAGAAGGCATGGACGTAGATGCGGCGTATTTGAACGC CCCGGTAGAAGAAGAGCTGTTTGATAAGCCACCCCCCGAGTTTTCCCCTT TCTCCGGAGACATACCGTTTGTGTGCCGACTGCGTAAATGCCTGCAGGGC CTCAAGCAGAGCGGCCGAAACTGGAATAATCCTCTTGATGATTTTCTTGT TGGGATAGGACTCGACCGTTCCACTACCGACTCATGCCTGTACTTTTCCC GCGACGAAGGAGAAGAGACAAACCTTCTGGTGGTCGTGTATGTTGACGAC CAGGTCATTGATCACCGTTGTGAGAAAGTAGAGAAGTTCGATATCGAGGG GAAGTGCTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig19042:212..571+

>mRNA_H-paniculata_contig19042.4772.1 ID=mRNA_H-paniculata_contig19042.4772.1|Name=mRNA_H-paniculata_contig19042.4772.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=678bp|location=Sequence derived from alignment at H-paniculata_contig19042:212..571+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACGTAGATGCGGCGTATTTGAACGCCCCGGTAGAAGAAGAGCTGTT
TGATAAGCCACCCCCCGAGTTTTCCCCTTTCTCCGGAGACATACCGTTTG
TGTGCCGACTGCGTAAATGCCTGCAGGGCCTCAAGCAGAGCGGCCGAAAC
TGGAATAATCCTCTTGATGATTTTCTTGTTGGGATAGGACTCGACCGTTC
CACTACCGACTCATGCCTGTACTTTTCCCGCGACGAAGGAGAAGAGACAA
ACCTTCTGGTGGTCGTGTATGTTGACGACCAGGTCATTGATCACCGTTGT
GAGAAAGTAGAGAAGTTCGATATCGAGGGGAAGTGCTGAATGGACGTAGA
TGCGGCGTATTTGAACGCCCCGGTAGAAGAAGAGCTGTTTGATAAGCCAC
CCCCCGAGTTTTCCCCTTTCTCCGGAGACATACCGTTTGTGTGCCGACTG
CGTAAATGCCTGCAGGGCCTCAAGCAGAGCGGCCGAAACTGGAATAATCC
TCTTGATGATTTTCTTGTTGGGATAGGACTCGACCGTTCCACTACCGACT
CATGCCTGTACTTTTCCCGCGACGAAGGAGAAGAGACAAACCTTCTGGTG
GTCGTGTATGTTGACGACCAGGTCATTGATCACCGTTGTGAGAAAGTAGA
GAAGTTCGATATCGAGGGGAAGTGCTGA
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