mRNA_H-paniculata_contig1902.4766.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1902.4766.1
Unique NamemRNA_H-paniculata_contig1902.4766.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1902.4766.1 vs. uniprot
Match: D8LC77_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LC77_ECTSI)

HSP 1 Score: 305 bits (781), Expect = 5.420e-96
Identity = 188/326 (57.67%), Postives = 240/326 (73.62%), Query Frame = 3
Query:  375 PSLMEQMMTEAMAAREEGMKKEQTKNRDRAKKDFGKGLKKGFLGGGSSAVA----------------RNRKAKAGAREAKRDSIPTITGRKTTSGSRSELEFDLSIKASTSSSNPGLVLPEVQEAMNEANQNNLGSSSNNKSNSHGLAGTEWLTPELLDKISQRPRLAAMLMNPRFAQAMQLMSTSPQEAKALFASSPEAQETFSQLSTLLAEHFTTMGKAADARAAAADADRRKVADGPLAQEALRKAAAGVGIAATTKPSPAEK-ADVERVLEQPELRELLMDPGMQRVLQECEQPSNLAQYMRHPEFGPKLQLMARAGLVSFR 1301
            PSLMEQMM EAMAA+E   ++++ +    AK+ FG GLKKGFL   +   A                R +++ +GA      SIP ITGRK +SG    LEFD+S +AS+++S+  L+LPEVQEAM  +  N LG +S       G  G EWLTPELL KIS++PRLAAML +PRF++AM+LMSTSP++A  +F SS EA+E+F++L +LL++HFT MG AAD +AAA +ADRR+VADGPLAQEALR+AA GVG+AAT  P+ AE+ A V++VL+QPELRELLMDPGMQRVLQEC +P  LA+YMRHPEFGPKLQLMA+AGL+SFR
Sbjct:   35 PSLMEQMMAEAMAAKEVKSQEQRLEQSRDAKQTFGGGLKKGFLSRPTRTTAVSSAXXXXXXXXXXXXRGKESTSGAPPEVEGSIPVITGRKASSGG---LEFDVSAEASSTTSD-SLLLPEVQEAMKHSASNPLGGASG------GGGGQEWLTPELLQKISEKPRLAAMLTDPRFSKAMELMSTSPKDALGMFESSAEARESFTELMSLLSKHFTAMGDAADEKAAAEEADRRRVADGPLAQEALRRAAEGVGVAAT--PATAEETATVDKVLQQPELRELLMDPGMQRVLQECGEPQELARYMRHPEFGPKLQLMAKAGLISFR 348          
BLAST of mRNA_H-paniculata_contig1902.4766.1 vs. uniprot
Match: A0A7S2RZ79_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RZ79_9STRA)

HSP 1 Score: 117 bits (293), Expect = 5.360e-25
Identity = 82/229 (35.81%), Postives = 126/229 (55.02%), Query Frame = 3
Query:  612 SRSELEFDLSIKASTSSSNPGLVLPEVQEAMNEANQNNLGSSSNNKSNSHGLAGTEWLTPELLDKISQRPRLAAMLMNPRFAQAMQLMSTSPQEAKALFASSPEAQETFSQLSTLLAEHFTTMGKAADARAAAADADRRKVADGPLAQEALRKAAAGVGIAATTKPSPA--EKADVERVLEQPELRELLMDPGMQRVLQECEQPSNLAQYMRHPEFGPKLQLMARAGLV 1292
            S +++E   ++KA+  +    LVL EVQ+AM  A    +G           L    W+T +L+ K ++ P LA  L +PR+  A+Q +  +P++A   F   PE     ++    + EHFT +G   D +    D     V  GPLA++A+R+A+     + +  P P+  E A V+R+++  ELRELLMD G+QRV+ EC+QP  L  YMR   +GPKL+ +A AGLV
Sbjct:  171 SSAKVEAIPTLKAAKDTKKNDLVLDEVQDAMKSAG-GGMGQM---------LQDGAWMTEDLMTKFAKNPLLAKGLSDPRYTAAIQELQKNPKQAMEKFQHDPELSAFLNEFCQTMGEHFTKLG---DQQQPPVDPATAAV-HGPLAEDAVRRASERAKQSPSPPPQPSKEEDAQVQRIMQDTELRELLMDSGLQRVMMECQQPGKLQMYMRDKTWGPKLRKLADAGLV 385          
BLAST of mRNA_H-paniculata_contig1902.4766.1 vs. uniprot
Match: A0A835Z085_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z085_9STRA)

HSP 1 Score: 108 bits (271), Expect = 1.310e-23
Identity = 80/219 (36.53%), Postives = 103/219 (47.03%), Query Frame = 3
Query:  675 LVLPEVQEAMNEANQNNLGSSSNNKSNSHGLAGTEWLTPELLDKISQRPRLAAMLMNPRFAQAMQLMSTSPQEAKALFASSPEAQETFSQLSTLLAEHFTTMGKAADARAAAADADRRKVADGPLAQEALRKAAAGVGIAATTKPSP----------AEKADVERVLEQPELRELLMDPGMQRVLQECEQPSNLAQYMRHPEFGPKLQLMARAGLVSFR 1301
            +VLPEVQ+AM E  +  L S+              WLTP LL KI+ RP LAA L +PRF +A++LM   P+ A ALF    +A+  F++L  LL  HF  +G      A                                               A  ADV R+L    LRELL+DPGMQ VLQEC  P  L  Y  HPE+GPK++ +A+AGLV  +
Sbjct:    1 VVLPEVQDAMAEQGRALLSSTD------------AWLTPALLSKIAARPALAAALQSPRFTRALELMRDDPRAAMALFGGDADARALFTELLGLLGTHFEELGAQTSQAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAADADVARILADEGLRELLVDPGMQTVLQECSAPGRLRHYAAHPEWGPKIRRLAQAGLVQIQ 207          
BLAST of mRNA_H-paniculata_contig1902.4766.1 vs. uniprot
Match: A0A7R9U615_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U615_9STRA)

HSP 1 Score: 100 bits (248), Expect = 3.520e-19
Identity = 104/335 (31.04%), Postives = 155/335 (46.27%), Query Frame = 3
Query:  372 EPSLMEQMMTEAMAAREEGMKKEQTKNRDRAKKDFGKGLKKGFLGGGSSAVARNRKAKA---------------GAREAKRDSIPTITGRKTTSGSRSELEFDLSIKASTSSSNPGLVLPEVQEAMNEANQNNLGSSSNNKSNSHGLAGTEWLTPELLDKISQRPRLAAMLMNPRFAQAMQLMSTSPQEAKALFASSPEAQETFSQLSTLLAEHFTTMGKAADARAAAADADRRKV---ADGPLA------QEALRKAAAGVGIAATTKPSPAEKADVERVLEQPELRELLMDPGMQRVLQECE-QPSNLAQYMRHPEFGPKLQLMARAGLVSFR 1301
            +PSLM +M+  A  AR     + +TK + R KK FG G +K  L                                   +R   P+  G    + SRSE E    +  S ++++P L LPEVQ AM E+                 L+   WLTPEL+ KI + PRL A + NP F   +  M ++P +       SPE QE   +   L+ +HF  +G   DA++ A   ++R+V   A GPLA      +EA +KA +G  +      S  E+ +V+  L+ PE+R+LLMD  +QRVL E    P+   + M+ P+   K++ MA  GLV  +
Sbjct:   57 DPSLMSEMLAAAEEARR-AKAEAKTKEQRRLKKSFGSGFQKXXLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNTTPGRRSGAPSEAGE---ARSRSE-EAPTLVGKSKTAADP-LRLPEVQAAMKESMAPLQAK----------LSEGSWLTPELMQKIQESPRLMAAMSNPAFGALLGRMQSNPSQVLKELKDSPETQELLKEFMVLMGKHFEALGAEDDAKSEAKQEEQRQVEQAARGPLAKKILEEEEAKKKAGSGSTL---DHLSDRERKEVDDHLQNPEVRQLLMDEDVQRVLVEASTNPAAFHRAMQSPDIARKIRRMAHLGLVQIQ 372          
BLAST of mRNA_H-paniculata_contig1902.4766.1 vs. uniprot
Match: A0A7S2KX84_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KX84_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 3.530e-17
Identity = 65/203 (32.02%), Postives = 108/203 (53.20%), Query Frame = 3
Query:  687 EVQEAMNEANQNNLGSSSNNKSNSHGLAGT-EWLTPELLDKISQRPRLAAMLMNPRFAQAMQLMSTSPQEAKALFASSPEAQETFSQLSTLLAEHFTTMGKAADARAAAADADRRKVADGPLAQEALRKAAAGVGIAATTKPSPAEKADVERVLEQPELRELLMDPGMQRVLQECEQPSNLAQYMRHPEFGPKLQLMARAGLV 1292
            EVQEAM EAN   L            L+G  +W TP+L++K +  PRL   L +P+F + ++ +  +P+   A   + PE   + ++  +L+ +HFT + K           D+  +  GPLA+EAL + + G      +  S  E+  V ++L   +L  +LMDP MQ +++EC +P  + +YMR   +GPKL+ +  AGL+
Sbjct:  276 EVQEAM-EANALGL------------LSGAADWATPDLIEKFANNPRLCKFLSDPKFMKIVRALEQNPKATFASLQNEPELLASLNEFCSLMGDHFTKLDKEKQ--------DKESI--GPLAKEALERHSIGWD----SNVSKEEQDKVNKILADRDLSRILMDPEMQVIIKECNEPGQMLKYMRDSVYGPKLRQLINAGLL 451          
BLAST of mRNA_H-paniculata_contig1902.4766.1 vs. uniprot
Match: A0A7S3ZLE6_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZLE6_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 4.930e-17
Identity = 95/325 (29.23%), Postives = 146/325 (44.92%), Query Frame = 3
Query:  372 EPSLMEQMMTEAMAAREEGMKKEQTKNRDRAKKDFG----KGLKKGFLGGGSSAVARNRKAKAGAREAKRDSIPTITGRKTTSGSRSELEFDLSIKASTSSSNPGLVLPEVQEAMNEANQNNLGSSSNNKSNSHGLA----GTEWLTPELLDKISQRPRLAAMLMNPRFAQAMQLMSTSPQEAKALFASSPEAQETFSQLSTLLAEHFTTMGKAADARAAAADA---DRRKVADGPLAQEALRKAAAGVGIAATTKPSPA----EKADVERVLEQPELRELLMDPGMQRVLQECEQPSNLAQYMRHPEFGPKLQLMARAGLVSFR 1301
            EPSL + MM +A+  + E   K   K   R KK FG    KGLKKGF     S+  +  K K   +E   D +PTIT                     +S   PG V+  ++E +          +S+   + H LA    G EW+TP+L+ ++++RP LA  + NP++  A+Q +   P+     F S PE +   ++   ++  H   +    DA   +  A   ++ K   GPL  +     A G G      P P     E+ +V+ VL+  ELRELLM+P  Q ++Q C  P    + MR P     +  + +AGLV  +
Sbjct:   54 EPSLADLMMGDALQNKAERAAKT-AKEEKRMKKSFGDGMKKGLKKGFFDKKPSSKKQPAKPKXXXKE---DEMPTITR--------------------SSKKEPGEVMQSMKEEI----------ASSMAQDRHPLAAALQGGEWVTPDLIKEMAKRPVLAKGMSNPKYQAALQELQKDPKNGAKKFDSDPELKRFLTEFCEVMGSHMIKLAGDEDAPKPSTPALPTEKEKKEMGPLCSQIAEDCANGKG------PEPCKTKKEQDEVDAVLKNEELRELLMNPKTQELMQRCSDPRAFQEAMRDPANRAIIGKLEQAGLVQLQ 338          
BLAST of mRNA_H-paniculata_contig1902.4766.1 vs. uniprot
Match: A0A5D6XKE5_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XKE5_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 3.310e-16
Identity = 89/320 (27.81%), Postives = 144/320 (45.00%), Query Frame = 3
Query:  369 QEPSLMEQMMTEAMAAREEGMKKEQTKNRDRAKKDFGKGLKKGFL---------GGGSSAVARNRKAKAGAREAKRDSIPTITGRKTTSGSRSELEFDLSIKASTSSSNPGLVLPEVQEAMNEANQNNLGSSSNNKSNSHGLAGTEWLTPELLDKISQRPRLAAMLMNPRFAQAMQLMSTSPQEAKALFASSPEAQETFSQLSTLLAEHFTTMGKAADARAAAADADRRKVADGPLAQEALRKAAAGVGIAATTKPSPAEKADVERVLEQPELRELLMDPGMQRVLQEC-EQPSNLAQYMRHPEFGPKLQLMARAGLVSF 1298
            ++ SLM++M+  A  A+E+  ++++ +   RA   FG+GLKKGF          G G++A     KA + A +     +PT         +    + + +  +    S+   V PEVQ A+   NQ                   +    +L++K+++ PRL   L NPRF QA+  M   P+ A   + + P            +  HF  +GK  +A A+     ++++ D     E  R A AG+      + SP E A V+++L+ PEL + L D  +   LQ C E P  L +    P    KL+L+A AGLV F
Sbjct:   44 EDASLMDEMVAVAQRAKEQTRRRQEKERNSRA---FGQGLKKGFFNAKPRTREGGAGTAATTLTPKAASAAHK----KLPTREDLLIVKQNDKGDDANATPSSXXXXSDSRFVFPEVQSALKSVNQ------------------LDPKDAKLIEKLAKNPRLVLALQNPRFTQAIDEMQREPEAAIRKYRNDPAVSAMLQDFLGFMGSHFEELGKEQEAAAS-----KQRIVD---LDETRRAAIAGM------ERSPEEDAQVQKILQSPELLQALSDADLMARLQRCRESPQELLRLQSDPSLRHKLRLLADAGLVRF 324          
BLAST of mRNA_H-paniculata_contig1902.4766.1 vs. uniprot
Match: W4GNU8_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GNU8_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 9.870e-16
Identity = 64/206 (31.07%), Postives = 92/206 (44.66%), Query Frame = 3
Query:  675 LVLPEVQEAMNEANQNNLGSSSNNKSNSHGLAGTEWLTPELLDKISQRPRLAAMLMNPRFAQAMQLMSTSPQEAKALFASSPEAQETFSQLSTLLAEHFTTMGKAADARAAAADADRRKVADGPLAQEALRKAAAGVGIAATTKPSPAEKADVERVLEQPELRELLMDPGMQRVLQECEQPSNLAQYMRHPEFGPKLQLMARAGLV 1292
            L LPEV +AMN+                  L   +W+TP   +K+ + P+L   + NPRF  A+Q MST+P  A   + + P+    F      +  HF  +GK  +  A             P   +  R+A   +        SP E A V+R+L  PEL           VL+ C+ P  L++YM    FGPK+Q +ARAGLV
Sbjct:  102 LHLPEVHDAMNQM---------------QNLKPEDWMTPAFFEKLGRNPKLCQAMKNPRFTAAIQEMSTNPTAAILKYQNDPDFGVMFKDFLQFMGHHFEELGKIEEKTAI------------PTRDDIQRQALTSMSR------SPEEDAVVQRILADPELXXXXXXXXXXXVLRACQVPGVLSKYMNDKVFGPKIQKLARAGLV 274          
BLAST of mRNA_H-paniculata_contig1902.4766.1 vs. uniprot
Match: A0A3R7K2X1_9STRA (Uncharacterized protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7K2X1_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 1.010e-15
Identity = 89/336 (26.49%), Postives = 138/336 (41.07%), Query Frame = 3
Query:  378 SLMEQMMTEAMAAREEGMKKEQTKNRDRAKKDFGKGLKKGFLGGGSSAVARNRKAKAGAREAKRDSIPTITGRKTTSGSRSELEFDLSIKASTSSSNPGLVLPEVQEAMNEANQNNLGSSSNNKSNSHGLAGTEWLTPELLDKISQRPRLAAMLMNPRFAQAMQLMSTSPQEAKALFASSPEAQETFSQLSTLLAEHFTTMGKAADARAAAADADRRKVADGPLAQ--------------------------EALRKAAAGVGIAATTKPSPAEKADVERVLEQPELRELLMDPGMQRVLQECEQ-PSNLAQYMRHPEFGPKLQLMARAGLVSFRS 1304
            S+M++MM  A  A+E    K + ++++R  K FG+GLKKGF     +        K+ A                            S +  + ++ P  V PEVQEAM   NQ               L   EW+     +K+++ P+LA  L NP F+ A+  M   P+ A   +   P            L  HF  +G +++A  A   + +++   G   Q                          +A R+A AG+      K SP E+A V+R+L+ PEL   L D  + + L  C+Q P  L +  + P  GPKL+L+ +  LV F S
Sbjct:   41 SIMDEMMAVAQRAKEA---KHKQQHKERNHKSFGQGLKKGFFNSSGTKKKTKTLVKSAAMLEPTQXXXXXXX----------XXXXKSNEEKSPAAEPTFVFPEVQEAMKSMNQ---------------LDPKEWMNERFFEKLARNPKLAQALQNPAFSTAIAEMQQDPRAAVLKYQKDPAVSTMLRDFMEFLGNHFEELGASSEAANATNQSPQQQQKHGDPLQGIRAQHGNSTASAPKSPAPPAIVDLDDARRQAIAGM------KHSPEEEAQVQRILQSPELLNALSDATLMQRLHTCQQSPQQLQRLAQDPVLGPKLRLLVQHNLVQFAS 342          
BLAST of mRNA_H-paniculata_contig1902.4766.1 vs. uniprot
Match: A0A662Y3Y0_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y3Y0_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 9.480e-14
Identity = 91/331 (27.49%), Postives = 133/331 (40.18%), Query Frame = 3
Query:  369 QEPSLMEQMMTEAMAAREEGMKKEQTKNRDRAKKDFGKGLKKGFLGGGSSAVARNRKAKAGAREAKRDSIPTITGRKTTSGSRSELEFDLSIKASTSSSNPGLVLPEVQEAMNEANQNNLGSSSNNKSNSHGLAGTEWLTPELLDKISQRPRLAAMLMNPRFAQAMQLMSTSPQEAKALFASSPEAQETFSQLSTLLAEHFTTMGKAADARAAAADADRRKVADG--------PLAQEALRKAAAGVGIA----------ATTKPSPAEKADVERVLEQPELRELLMDPGMQRVLQECEQ-PSNLAQYMRHPEFGPKLQLMARAGLVSFRS 1304
            ++ SLM++M+  A  A+E   +KEQ K R+R  K FG+GLKKGF    +                                              T  ++   V PEVQEA+   NQ N  +  +    S       W+     +K+S+ P+LA  L NP F QA+  M   P+ A   +   P            L  HF  +        A     + + +DG        PLA+ A   A     I           A  + +P E+A V+R+L+ PEL   L D  + + L  C+Q P  L +  R P  GPKL+L+A+  LV+F S
Sbjct:   34 EDESLMDEMVAIAQTAKE-AKRKEQEKERNR--KSFGQGLKKGFFNTSAXXXXXXXXXX--------XXXXXXXXXXXXXXXXXXXXXXXXXXXKTEPADSTFVFPEVQEALQSVNQLNP-NGLDQALQSPSRLSARWMNERFFEKLSRNPKLAQALQNPAFTQAIAEMQQDPRAAVLKYQKDPAVSTMLQDFMAFLGSHFEEVKAHMGEAEAQKTPSQPQQSDGHQGERKLQPLAESAASSAQKPPAIVDLDAKRREAIANMQRTPEEEAQVQRILQNPELMTALSDEKLMQQLHACQQAPEQLQRLARDPVLGPKLRLLAQHKLVTFAS 352          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1902.4766.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
D8LC77_ECTSI5.420e-9657.67Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2RZ79_9STRA5.360e-2535.81Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A835Z085_9STRA1.310e-2336.53Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7R9U615_9STRA3.520e-1931.04Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2KX84_9STRA3.530e-1732.02Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S3ZLE6_9STRA4.930e-1729.23Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A5D6XKE5_9STRA3.310e-1627.81Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
W4GNU8_9STRA9.870e-1631.07Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]
A0A3R7K2X1_9STRA1.010e-1526.49Uncharacterized protein n=4 Tax=Phytophthora kerno... [more]
A0A662Y3Y0_9STRA9.480e-1427.49Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1902contigH-paniculata_contig1902:3721..6132 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score312.4
Seed ortholog evalue3.3e-82
Seed eggNOG ortholog2880.D8LC77
Hectar predicted targeting categoryother localisation
EggNOG OGs2C2DM@1,2S2RK@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size1669
Cds size1278
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1902.4766.1prot_H-paniculata_contig1902.4766.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1902 4083..6103 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929458.7769494-UTR-H-paniculata_contig1902:3720..40821622929458.7769494-UTR-H-paniculata_contig1902:3720..4082Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1902 3721..4082 -
1691480870.4766655-UTR-H-paniculata_contig1902:3720..40821691480870.4766655-UTR-H-paniculata_contig1902:3720..4082Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1902 3721..4082 -
1622929458.8588262-UTR-H-paniculata_contig1902:6103..61321622929458.8588262-UTR-H-paniculata_contig1902:6103..6132Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1902 6104..6132 -
1691480870.5074563-UTR-H-paniculata_contig1902:6103..61321691480870.5074563-UTR-H-paniculata_contig1902:6103..6132Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1902 6104..6132 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929458.8259068-CDS-H-paniculata_contig1902:4082..48431622929458.8259068-CDS-H-paniculata_contig1902:4082..4843Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1902 4083..4843 -
1691480870.48805-CDS-H-paniculata_contig1902:4082..48431691480870.48805-CDS-H-paniculata_contig1902:4082..4843Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1902 4083..4843 -
1622929458.8401003-CDS-H-paniculata_contig1902:5586..61031622929458.8401003-CDS-H-paniculata_contig1902:5586..6103Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1902 5587..6103 -
1691480870.4978642-CDS-H-paniculata_contig1902:5586..61031691480870.4978642-CDS-H-paniculata_contig1902:5586..6103Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1902 5587..6103 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1902.4766.1

>prot_H-paniculata_contig1902.4766.1 ID=prot_H-paniculata_contig1902.4766.1|Name=mRNA_H-paniculata_contig1902.4766.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=426bp
MILRGSQTDPGLEPPAPTHGSREANTKTHINQEKLDISAPIGTRRTLTPD
LVDRLTMLTLSSSSTASTPANNHHSLTSNNATCGRTSAFVGSSTVSLSAA
AERSCSQQKDDTNQEPSLMEQMMTEAMAAREEGMKKEQTKNRDRAKKDFG
KGLKKGFLGGGSSAVARNRKAKAGAREAKRDSIPTITGRKTTSGSRSELE
FDLSIKASTSSSNPGLVLPEVQEAMNEANQNNLGSSSNNKSNSHGLAGTE
WLTPELLDKISQRPRLAAMLMNPRFAQAMQLMSTSPQEAKALFASSPEAQ
ETFSQLSTLLAEHFTTMGKAADARAAAADADRRKVADGPLAQEALRKAAA
GVGIAATTKPSPAEKADVERVLEQPELRELLMDPGMQRVLQECEQPSNLA
QYMRHPEFGPKLQLMARAGLVSFRS*
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mRNA from alignment at H-paniculata_contig1902:3721..6132-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1902.4766.1 ID=mRNA_H-paniculata_contig1902.4766.1|Name=mRNA_H-paniculata_contig1902.4766.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2412bp|location=Sequence derived from alignment at H-paniculata_contig1902:3721..6132- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTACACTGTGCAGGAGTCAACCGGTAAAGATGATATTACGAGGCTCACAG ACAGATCCAGGATTAGAACCACCTGCTCCCACACATGGCAGTAGAGAAGC CAATACCAAGACACACATCAACCAAGAGAAGCTCGACATATCCGCTCCCA TAGGCACGAGGAGAACATTAACCCCAGACCTGGTTGATCGTCTGACCATG CTCACCTTAAGCAGCAGCAGCACCGCATCTACCCCTGCCAACAATCATCA TTCGCTGACATCAAATAACGCGACTTGTGGTAGAACCAGTGCTTTCGTGG GATCTTCGACAGTAAGTCTCTCGGCAGCAGCGGAGCGGTCGTGCAGCCAG CAAAAGGATGATACCAATCAGGAGCCTAGTTTGATGGAACAAATGATGAC CGAGGCGATGGCCGCGAGAGAAGAGGGGATGAAGAAAGAGCAGACGAAGA ACAGGGATAGGGCGAAGAAAGACTTTGGAAAAGGGTTGAAGAAGGGTTTT TTGGGAGGAGGATCGTCGGCTGTCGCTCGTAATCGCAAGGCCAAAGGCAA GTACTGTGGACAACAGTGCTAGGGTGTTCTTTGCGTGAGGTGTGAGAATG GGCATGGCATGCAGGAGAGCAGTCCAAAACGAACGGTGGTCTACTCAGTA TTTCCAACTACGAGCTGTCTGTAAACCTCTTGTTGAGCATTTTTCTGAAC AGGAGTACAAGCAGGAGTGGGCGGCTTGAAAGTGTGCAGCACCTCCTTTC CGTTGCTCAGGTTGCTGCGAAAAACTCTAGTTTTAACCCACAGTACCAAT ATATGAGTAGAGTGGAAGCTACATGCTCGGCAGGTTTCTGGCAACATCGG GAATTCCAATTACTTCTACATACTAATTGGGCTGCGATTGGTTATCACTT TGGATCTTTACTGCTGGAGCGATCGCATTTCCTCGTTCTACATTCCACAT GGAACAAGTATCGAGCATTGTCAAGCTTGAGGTCTGAACCATGCATGAGA ATCACGAGTGGAGGGAGACAAGTGAGGCGCTGGCTGTTTACTCACTGAGC GGGGACACCCCTGGGATCCCGTTGATTATAGACCAACGGGATTTTATTTC GTGATGATCTAATGTGATGGAAAAATAATTTAGATACCATACCTCGTACC AGTACATGAATTCCCGCCGATTTGAAGGAATATTCGGCCAAGAATAGAGC TCCGGTCCGTCACTAAAATGCCCTAGGTAGTACACCAGACTTCGCTAAGT GCCAGTTTCCCTCCGTTTACTTTTTGTATTATATAACAGCGGGTGCTCGG GAAGCGAAACGAGACAGCATTCCCACTATCACCGGCCGAAAAACGACGAG CGGGTCGCGTAGTGAGCTGGAGTTTGACCTATCCATCAAGGCCAGTACGA GTAGCAGCAATCCGGGGCTTGTTCTTCCCGAGGTTCAAGAAGCAATGAAC GAGGCCAATCAAAACAATTTAGGCAGCAGCAGCAACAACAAGAGCAACTC ACATGGATTAGCTGGTACAGAGTGGTTGACGCCGGAGCTCCTGGATAAGA TCTCGCAACGGCCGCGGCTGGCGGCAATGCTCATGAACCCACGCTTCGCC CAGGCCATGCAACTCATGTCAACTTCCCCCCAAGAAGCGAAGGCACTGTT CGCTTCTAGCCCAGAAGCGCAAGAAACGTTTTCCCAATTATCGACGCTAC TTGCGGAGCATTTTACCACTATGGGAAAGGCTGCTGATGCGCGCGCAGCA GCCGCCGACGCAGATCGTCGAAAGGTAGCCGACGGACCGTTAGCGCAGGA GGCGCTGCGAAAAGCAGCAGCGGGGGTAGGAATAGCAGCGACGACGAAAC CGTCTCCAGCAGAAAAGGCTGACGTCGAGAGAGTGCTCGAGCAGCCGGAA TTGAGGGAGTTGCTGATGGACCCAGGCATGCAAAGGGTTCTACAAGAGTG TGAGCAACCTTCCAATCTGGCGCAGTATATGCGGCATCCGGAATTCGGGC CCAAGTTGCAACTGATGGCTCGAGCGGGATTGGTGTCTTTCCGATCTTAG TTATCTCAATGCATGGGGCGACGTACTCTCCTGGGTTTAGTGGGCGTATT GGGCTGGTGACTGCGGGGCCGAGCTCAATCTTGGGCAAGTATGATGATGT ATTTGACCCGCTTCTCGCCACCGCTGGCGTAGTTACAACTGCTTGGGCTT TTCGAATATTTTCGTTTGTATCGTTGGTTTCCCCTGCTCATCCGCCATGG TTCTTCGGATTGTGAGATTCATAGGCACAAGACACCCACGTGCATCATGT GTCAGGATTATATTGCAAGCTAGAACACGACTGGAGTATGTCGTCAGACC TCCAAATCAGATGTTAACGAACACACCGTCACATGTGCATGCGACGCGGC ATAAGTCAGACG
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Coding sequence (CDS) from alignment at H-paniculata_contig1902:3721..6132-

>mRNA_H-paniculata_contig1902.4766.1 ID=mRNA_H-paniculata_contig1902.4766.1|Name=mRNA_H-paniculata_contig1902.4766.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2556bp|location=Sequence derived from alignment at H-paniculata_contig1902:3721..6132- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATATTACGAGGCTCACAGACAGATCCAGGATTAGAACCACCTGCTCC
CACACATGGCAGTAGAGAAGCCAATACCAAGACACACATCAACCAAGAGA
AGCTCGACATATCCGCTCCCATAGGCACGAGGAGAACATTAACCCCAGAC
CTGGTTGATCGTCTGACCATGCTCACCTTAAGCAGCAGCAGCACCGCATC
TACCCCTGCCAACAATCATCATTCGCTGACATCAAATAACGCGACTTGTG
GTAGAACCAGTGCTTTCGTGGGATCTTCGACAGTAAGTCTCTCGGCAGCA
GCGGAGCGGTCGTGCAGCCAGCAAAAGGATGATACCAATCAGGAGCCTAG
TTTGATGGAACAAATGATGACCGAGGCGATGGCCGCGAGAGAAGAGGGGA
TGAAGAAAGAGCAGACGAAGAACAGGGATAGGGCGAAGAAAGACTTTGGA
AAAGGGTTGAAGAAGGGTTTTTTGGGAGGAGGATCGTCGGCTGTCGCTCG
TAATCGCAAGGCCAAAGATGATATTACGAGGCTCACAGACAGATCCAGGA
TTAGAACCACCTGCTCCCACACATGGCAGTAGAGAAGCCAATACCAAGAC
ACACATCAACCAAGAGAAGCTCGACATATCCGCTCCCATAGGCACGAGGA
GAACATTAACCCCAGACCTGGTTGATCGTCTGACCATGCTCACCTTAAGC
AGCAGCAGCACCGCATCTACCCCTGCCAACAATCATCATTCGCTGACATC
AAATAACGCGACTTGTGGTAGAACCAGTGCTTTCGTGGGATCTTCGACAG
TAAGTCTCTCGGCAGCAGCGGAGCGGTCGTGCAGCCAGCAAAAGGATGAT
ACCAATCAGGAGCCTAGTTTGATGGAACAAATGATGACCGAGGCGATGGC
CGCGAGAGAAGAGGGGATGAAGAAAGAGCAGACGAAGAACAGGGATAGGG
CGAAGAAAGACTTTGGAAAAGGGTTGAAGAAGGGTTTTTTGGGAGGAGGA
TCGTCGGCTGTCGCTCGTAATCGCAAGGCCAAAGCGGGTGCTCGGGAAGC
GAAACGAGACAGCATTCCCACTATCACCGGCCGAAAAACGACGAGCGGGT
CGCGTAGTGAGCTGGAGTTTGACCTATCCATCAAGGCCAGTACGAGTAGC
AGCAATCCGGGGCTTGTTCTTCCCGAGGTTCAAGAAGCAATGAACGAGGC
CAATCAAAACAATTTAGGCAGCAGCAGCAACAACAAGAGCAACTCACATG
GATTAGCTGGTACAGAGTGGTTGACGCCGGAGCTCCTGGATAAGATCTCG
CAACGGCCGCGGCTGGCGGCAATGCTCATGAACCCACGCTTCGCCCAGGC
CATGCAACTCATGTCAACTTCCCCCCAAGAAGCGAAGGCACTGTTCGCTT
CTAGCCCAGAAGCGCAAGAAACGTTTTCCCAATTATCGACGCTACTTGCG
GAGCATTTTACCACTATGGGAAAGGCTGCTGATGCGCGCGCAGCAGCCGC
CGACGCAGATCGTCGAAAGGTAGCCGACGGACCGTTAGCGCAGGAGGCGC
TGCGAAAAGCAGCAGCGGGGGTAGGAATAGCAGCGACGACGAAACCGTCT
CCAGCAGAAAAGGCTGACGTCGAGAGAGTGCTCGAGCAGCCGGAATTGAG
GGAGTTGCTGATGGACCCAGGCATGCAAAGGGTTCTACAAGAGTGTGAGC
AACCTTCCAATCTGGCGCAGTATATGCGGCATCCGGAATTCGGGCCCAAG
TTGCAACTGATGGCTCGAGCGGGATTGGTGTCTTTCCGATCTTAGCGGGT
GCTCGGGAAGCGAAACGAGACAGCATTCCCACTATCACCGGCCGAAAAAC
GACGAGCGGGTCGCGTAGTGAGCTGGAGTTTGACCTATCCATCAAGGCCA
GTACGAGTAGCAGCAATCCGGGGCTTGTTCTTCCCGAGGTTCAAGAAGCA
ATGAACGAGGCCAATCAAAACAATTTAGGCAGCAGCAGCAACAACAAGAG
CAACTCACATGGATTAGCTGGTACAGAGTGGTTGACGCCGGAGCTCCTGG
ATAAGATCTCGCAACGGCCGCGGCTGGCGGCAATGCTCATGAACCCACGC
TTCGCCCAGGCCATGCAACTCATGTCAACTTCCCCCCAAGAAGCGAAGGC
ACTGTTCGCTTCTAGCCCAGAAGCGCAAGAAACGTTTTCCCAATTATCGA
CGCTACTTGCGGAGCATTTTACCACTATGGGAAAGGCTGCTGATGCGCGC
GCAGCAGCCGCCGACGCAGATCGTCGAAAGGTAGCCGACGGACCGTTAGC
GCAGGAGGCGCTGCGAAAAGCAGCAGCGGGGGTAGGAATAGCAGCGACGA
CGAAACCGTCTCCAGCAGAAAAGGCTGACGTCGAGAGAGTGCTCGAGCAG
CCGGAATTGAGGGAGTTGCTGATGGACCCAGGCATGCAAAGGGTTCTACA
AGAGTGTGAGCAACCTTCCAATCTGGCGCAGTATATGCGGCATCCGGAAT
TCGGGCCCAAGTTGCAACTGATGGCTCGAGCGGGATTGGTGTCTTTCCGA
TCTTAG
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