mRNA_H-paniculata_contig19.4753.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19.4753.1
Unique NamemRNA_H-paniculata_contig19.4753.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig19.4753.1 vs. uniprot
Match: A0A6H5JDA0_9PHAE (PhoLip_ATPase_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDA0_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 5.300e-42
Identity = 69/86 (80.23%), Postives = 80/86 (93.02%), Query Frame = 1
Query:    1 MADNVVRTSKYNLITFVPRSLFEQFRRVANVYFLVIIILMMIGWYTELFTSPLSPYSTLIPLVIVLLVTMVKDGAEDLKRHKSDKR 258
            MADN V TSKYN+ITFVPRSLFEQFRR+ANVYFLVI +LMM+GWYT+LF SPL+P+STLIPL++VL VTM+KDGAEDLKRH+SD R
Sbjct:   32 MADNSVVTSKYNVITFVPRSLFEQFRRIANVYFLVISVLMMLGWYTDLFESPLAPFSTLIPLILVLSVTMIKDGAEDLKRHRSDNR 117          
BLAST of mRNA_H-paniculata_contig19.4753.1 vs. uniprot
Match: D8LGJ4_ECTSI (Phospholipid-transporting ATPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGJ4_ECTSI)

HSP 1 Score: 146 bits (369), Expect = 9.790e-39
Identity = 72/94 (76.60%), Postives = 84/94 (89.36%), Query Frame = 1
Query:    1 MADNVVRTSKYNLITFVPRSLFEQFRRVANVYFLVIIILMMIGWYTELFTSPLSPYSTLIPLVIVLLVTMVKDGAEDLKRHKSDKRVSEREIVA 282
            MADN V TSKYN+ITFVPRSLFEQFRR+ANVYFLVI +LMM+GWYT+LF SPL+P+ST+IPL++VL VTMVKDGAEDLKRH+SD RV+  E  A
Sbjct:   32 MADNSVVTSKYNVITFVPRSLFEQFRRIANVYFLVISVLMMLGWYTDLFESPLAPFSTIIPLILVLSVTMVKDGAEDLKRHRSDNRVNNTEATA 125          
BLAST of mRNA_H-paniculata_contig19.4753.1 vs. uniprot
Match: A0A836CHZ9_9STRA (Phospholipid-transporting ATPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHZ9_9STRA)

HSP 1 Score: 125 bits (314), Expect = 2.580e-31
Identity = 61/91 (67.03%), Postives = 77/91 (84.62%), Query Frame = 1
Query:    7 DNVVRTSKYNLITFVPRSLFEQFRRVANVYFLVIIILMMIGWYTELFTSPLSPYSTLIPLVIVLLVTMVKDGAEDLKRHKSDKRVSEREIV 279
            DN + T+KYNLITF+PRSLFEQFRR AN+YFLVI +LM++G YT LF SPL+P+STLIPLV+VL++TM K+G EDLKRH+SD  V+ R + 
Sbjct:  129 DNSIDTAKYNLITFLPRSLFEQFRRAANIYFLVISVLMVLGTYTSLFNSPLTPFSTLIPLVMVLVITMGKEGIEDLKRHRSDHLVNNRRMA 219          
BLAST of mRNA_H-paniculata_contig19.4753.1 vs. uniprot
Match: A0A7S4DIG8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DIG8_HETAK)

HSP 1 Score: 116 bits (290), Expect = 1.850e-30
Identity = 56/84 (66.67%), Postives = 72/84 (85.71%), Query Frame = 1
Query:    4 ADNVVRTSKYNLITFVPRSLFEQFRRVANVYFLVIIILMMIGWYTELFTSPLSPYSTLIPLVIVLLVTMVKDGAEDLKRHKSDK 255
            A N V T+KYNL+TF+PR+LFEQFRR+ANVYFLVI ILM+IG YT+ F SP++P+ST+ PLVI++ + M K+G EDLKRH+SDK
Sbjct:   58 ATNAVHTAKYNLVTFLPRALFEQFRRLANVYFLVISILMIIGTYTDYFDSPVTPWSTIGPLVIMITIIMAKEGMEDLKRHQSDK 141          
BLAST of mRNA_H-paniculata_contig19.4753.1 vs. uniprot
Match: A0A7S1CBW1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CBW1_9STRA)

HSP 1 Score: 111 bits (277), Expect = 2.250e-28
Identity = 59/88 (67.05%), Postives = 72/88 (81.82%), Query Frame = 1
Query:   10 NVVRTSKYNLITFVPRSLFEQFRRVANVYFLVIIILMMIGWYTE-LFTSPLSPYSTLIPLVIVLLVTMVKDGAEDLKRHKSDKRVSER 270
            N V T KYNL+TF+PRSLFEQFRR+AN YFLVI ILM+IG     +F SPLSPYSTL PLV+VL +T+VK+GAEDLKR ++D+ V+ R
Sbjct:   64 NAVSTQKYNLVTFLPRSLFEQFRRLANCYFLVISILMLIGTENPAIFDSPLSPYSTLGPLVLVLTITIVKEGAEDLKRFRADREVNAR 151          
BLAST of mRNA_H-paniculata_contig19.4753.1 vs. uniprot
Match: W7TQX5_9STRA (Phospholipid-transporting ATPase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TQX5_9STRA)

HSP 1 Score: 115 bits (288), Expect = 8.320e-28
Identity = 53/88 (60.23%), Postives = 73/88 (82.95%), Query Frame = 1
Query:    7 DNVVRTSKYNLITFVPRSLFEQFRRVANVYFLVIIILMMIGWYTELFTSPLSPYSTLIPLVIVLLVTMVKDGAEDLKRHKSDKRVSER 270
            DN V T+KYNL TF+PR+LFEQFRR+AN+YFLV+ +LM+IG Y++ + SPL+PY+TLIPL +VL +TM K+  EDLKRH +D++ + R
Sbjct:  114 DNSVSTAKYNLFTFIPRALFEQFRRLANIYFLVVTVLMLIGTYSDFYESPLTPYTTLIPLCVVLTITMGKEAFEDLKRHTADQKTNNR 201          
BLAST of mRNA_H-paniculata_contig19.4753.1 vs. uniprot
Match: A0A8J2SPA8_9STRA (Phospholipid-transporting ATPase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SPA8_9STRA)

HSP 1 Score: 113 bits (282), Expect = 5.320e-27
Identity = 55/86 (63.95%), Postives = 70/86 (81.40%), Query Frame = 1
Query:    7 DNVVRTSKYNLITFVPRSLFEQFRRVANVYFLVIIILMMIGWYTELFTSPLSPYSTLIPLVIVLLVTMVKDGAEDLKRHKSDKRVS 264
            DN VRT KYNL+ F P+S+FEQ RR AN YFL+I I+M +G YT  F SPL+P+ST +PL+I+LLVTM K+G ED+KRH+SDKRV+
Sbjct:   36 DNGVRTYKYNLLNFFPKSMFEQMRRTANQYFLLICIMMFLGTYTTWFYSPLTPWSTFLPLMIILLVTMAKEGFEDVKRHQSDKRVN 121          
BLAST of mRNA_H-paniculata_contig19.4753.1 vs. uniprot
Match: F0YJC7_AURAN (Phospholipid-transporting ATPase n=2 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJC7_AURAN)

HSP 1 Score: 112 bits (279), Expect = 1.350e-26
Identity = 55/90 (61.11%), Postives = 72/90 (80.00%), Query Frame = 1
Query:    4 ADNVVRTSKYNLITFVPRSLFEQFRRVANVYFLVIIILMMIGWYTELFTSPLSPYSTLIPLVIVLLVTMVKDGAEDLKRHKSDKRVSERE 273
            +DN + T KYN +TF+PRSLFEQFRR AN YFL+I +LM+IG YT+LF SPL+ +ST+ PL ++L +TM K+G EDLKRHKSD+ V+  E
Sbjct:   44 SDNSITTHKYNALTFLPRSLFEQFRRTANQYFLLISLLMIIGTYTDLFYSPLTAWSTIGPLSLILAITMTKEGIEDLKRHKSDEHVNNSE 133          
BLAST of mRNA_H-paniculata_contig19.4753.1 vs. uniprot
Match: W7TGI1_9STRA (Phospholipid-transporting ATPase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TGI1_9STRA)

HSP 1 Score: 111 bits (278), Expect = 1.850e-26
Identity = 54/83 (65.06%), Postives = 71/83 (85.54%), Query Frame = 1
Query:    7 DNVVRTSKYNLITFVPRSLFEQFRRVANVYFLVIIILMMIGWYTELFTSPLSPYSTLIPLVIVLLVTMVKDGAEDLKRHKSDK 255
            +N V TSKY +++F P+SLFEQFRR+ANVYFLVIIIL+M+G YT LF +PL+PY+TL PL++VL VTM K+G ED+KRH +D+
Sbjct:   40 NNSVSTSKYTVLSFFPKSLFEQFRRLANVYFLVIIILLMLGTYTPLFDAPLTPYTTLFPLLVVLAVTMGKEGFEDVKRHIADR 122          
BLAST of mRNA_H-paniculata_contig19.4753.1 vs. uniprot
Match: A0A482UDJ0_9ARCH (PhoLip_ATPase_N domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UDJ0_9ARCH)

HSP 1 Score: 108 bits (269), Expect = 4.630e-26
Identity = 56/89 (62.92%), Postives = 69/89 (77.53%), Query Frame = 1
Query:    7 DNVVRTSKYNLITFVPRSLFEQFRRVANVYFLVIIILMMIGWY-TELFTSPLSPYSTLIPLVIVLLVTMVKDGAEDLKRHKSDKRVSER 270
            DN + TSKY  I+F+PRSLFEQFRR+ANVYF  I I+M IG Y  ++F SPLSPYSTL PL +VL +TM+K+G ED KRH+SD  V+ R
Sbjct:  149 DNFITTSKYTWISFIPRSLFEQFRRIANVYFFGISIVMFIGTYFPKVFESPLSPYSTLGPLCLVLAITMLKEGIEDFKRHRSDHEVNNR 237          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19.4753.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JDA0_9PHAE5.300e-4280.23PhoLip_ATPase_N domain-containing protein n=1 Tax=... [more]
D8LGJ4_ECTSI9.790e-3976.60Phospholipid-transporting ATPase n=1 Tax=Ectocarpu... [more]
A0A836CHZ9_9STRA2.580e-3167.03Phospholipid-transporting ATPase n=1 Tax=Tribonema... [more]
A0A7S4DIG8_HETAK1.850e-3066.67Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S1CBW1_9STRA2.250e-2867.05Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
W7TQX5_9STRA8.320e-2860.23Phospholipid-transporting ATPase n=2 Tax=Monodopsi... [more]
A0A8J2SPA8_9STRA5.320e-2763.95Phospholipid-transporting ATPase n=1 Tax=Pelagomon... [more]
F0YJC7_AURAN1.350e-2661.11Phospholipid-transporting ATPase n=2 Tax=Aureococc... [more]
W7TGI1_9STRA1.850e-2665.06Phospholipid-transporting ATPase n=2 Tax=Monodopsi... [more]
A0A482UDJ0_9ARCH4.630e-2662.92PhoLip_ATPase_N domain-containing protein (Fragmen... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19contigH-paniculata_contig19:12342..12644 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score146.0
Seed ortholog evalue9.7e-33
Seed eggNOG ortholog2880.D8LGJ4
Preferred nameDNF3
KEGG rclassRC00002
KEGG koko:K01509,ko:K01530,ko:K14802
KEGG TC3.A.3.8
KEGG ReactionR00086
KEGG Pathwayko00230,ko04742,map00230,map04742
Hectar predicted targeting categorysignal anchor
GOsGO:0000749,GO:0003674,GO:0003824,GO:0004012,GO:0005215,GO:0005319,GO:0005548,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005794,GO:0005798,GO:0005802,GO:0005886,GO:0005937,GO:0006810,GO:0006811,GO:0006820,GO:0006869,GO:0006886,GO:0006892,GO:0006900,GO:0006996,GO:0008104,GO:0008150,GO:0009987,GO:0010033,GO:0010876,GO:0012505,GO:0015031,GO:0015711,GO:0015748,GO:0015833,GO:0015914,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019236,GO:0030133,GO:0030135,GO:0030136,GO:0030140,GO:0030427,GO:0031136,GO:0031137,GO:0031139,GO:0031224,GO:0031410,GO:0031982,GO:0031984,GO:0032456,GO:0033036,GO:0034204,GO:0034613,GO:0042221,GO:0042623,GO:0042886,GO:0042995,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043332,GO:0043492,GO:0043900,GO:0043902,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044459,GO:0044463,GO:0044464,GO:0045184,GO:0045332,GO:0046907,GO:0046999,GO:0048193,GO:0048194,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051286,GO:0051641,GO:0051649,GO:0051716,GO:0061024,GO:0065007,GO:0065008,GO:0070727,GO:0070867,GO:0070887,GO:0071310,GO:0071444,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0097035,GO:0097708,GO:0098791,GO:0120025,GO:0120038,GO:2000241,GO:2000243
EggNOG free text desc.phospholipid-translocating ATPase activity
EggNOG OGsCOG0474@1,KOG0206@2759
EC3.6.1.3,3.6.3.1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009
Exons1
Model size303
Cds size303
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929456.688374-CDS-H-paniculata_contig19:12341..126441622929456.688374-CDS-H-paniculata_contig19:12341..12644Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19 12342..12644 -
1691480869.3912172-CDS-H-paniculata_contig19:12341..126441691480869.3912172-CDS-H-paniculata_contig19:12341..12644Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19 12342..12644 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19.4753.1prot_H-paniculata_contig19.4753.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19 12342..12644 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19.4753.1

>prot_H-paniculata_contig19.4753.1 ID=prot_H-paniculata_contig19.4753.1|Name=mRNA_H-paniculata_contig19.4753.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=101bp
MADNVVRTSKYNLITFVPRSLFEQFRRVANVYFLVIIILMMIGWYTELFT
SPLSPYSTLIPLVIVLLVTMVKDGAEDLKRHKSDKRVSEREIVAERAQLR
*
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mRNA from alignment at H-paniculata_contig19:12342..12644-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19.4753.1 ID=mRNA_H-paniculata_contig19.4753.1|Name=mRNA_H-paniculata_contig19.4753.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=303bp|location=Sequence derived from alignment at H-paniculata_contig19:12342..12644- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCCGACAACGTAGTGAGGACTTCCAAGTACAACCTGATCACGTTCGT GCCTCGGTCGCTGTTCGAGCAGTTCAGGCGGGTGGCCAATGTGTACTTCT TGGTGATCATTATCCTGATGATGATCGGCTGGTACACGGAGTTATTCACG TCGCCGCTTTCTCCATACTCCACCCTGATCCCGCTGGTAATTGTGTTGCT TGTCACGATGGTGAAGGACGGTGCTGAGGACCTCAAGCGGCACAAGTCGG ACAAGAGGGTAAGTGAGAGAGAAATAGTTGCTGAACGTGCGCAATTGAGA TGA
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Coding sequence (CDS) from alignment at H-paniculata_contig19:12342..12644-

>mRNA_H-paniculata_contig19.4753.1 ID=mRNA_H-paniculata_contig19.4753.1|Name=mRNA_H-paniculata_contig19.4753.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at H-paniculata_contig19:12342..12644- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCCGACAACGTAGTGAGGACTTCCAAGTACAACCTGATCACGTTCGT
GCCTCGGTCGCTGTTCGAGCAGTTCAGGCGGGTGGCCAATGTGTACTTCT
TGGTGATCATTATCCTGATGATGATCGGCTGGTACACGGAGTTATTCACG
TCGCCGCTTTCTCCATACTCCACCCTGATCCCGCTGGTAATTGTGTTGCT
TGTCACGATGGTGAAGGACGGTGCTGAGGACCTCAAGCGGCACAAGTCGG
ACAAGAGGGTAAGTGAGAGAGAAATAGTTGCTGAACGTGCGCAATTGAGA
TGAATGGCCGACAACGTAGTGAGGACTTCCAAGTACAACCTGATCACGTT
CGTGCCTCGGTCGCTGTTCGAGCAGTTCAGGCGGGTGGCCAATGTGTACT
TCTTGGTGATCATTATCCTGATGATGATCGGCTGGTACACGGAGTTATTC
ACGTCGCCGCTTTCTCCATACTCCACCCTGATCCCGCTGGTAATTGTGTT
GCTTGTCACGATGGTGAAGGACGGTGCTGAGGACCTCAAGCGGCACAAGT
CGGACAAGAGGGTAAGTGAGAGAGAAATAGTTGCTGAACGTGCGCAATTG
AGATGA
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