prot_H-paniculata_contig1898.4742.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig1898.4742.1
Unique Nameprot_H-paniculata_contig1898.4742.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length115
Homology
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BLAST of mRNA_H-paniculata_contig1898.4742.1 vs. uniprot
Match: A0A6H5KVU5_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVU5_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 3.640e-15
Identity = 42/91 (46.15%), Postives = 58/91 (63.74%), Query Frame = 0 
Query:   23 EQLVDFWLSYGRQKFRLLSKAARSVLGSPASSAVLERDFSEAEKLRSRQRGSLSPTYGEMVMFLRAVYDYIPEATPKMTADEVDEAIPFRL 113
            E L++FW   G+  +  +++AAR +L  PASSAVLERDFS A +L +  R  LS  Y EMV+FL    +YIP   PK++  +  EA+P RL
Sbjct:  710 EVLLEFWAGEGQALYPNMARAARVLLSVPASSAVLERDFSTAGRLITGARSRLSAAYVEMVLFLNGNQEYIPMEVPKLSKSQGQEAVPRRL 800
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BLAST of mRNA_H-paniculata_contig1898.4742.1 vs. uniprot
Match: A0A6H5KX27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX27_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 1.720e-14
Identity = 47/106 (44.34%), Postives = 65/106 (61.32%), Query Frame = 0 
Query:   12 IPSQYRGLSGGEQLVDFWLS-YGRQKFRLLSKAARSVLGSPASSAVLERDFSEAEKLRSRQRGSLSPTYGEMVMFLRAVYDYIPEATPKMTADEVDE--AIPFRLR 114
            IPS  RG    +   D+W + +G+ +   L   A+ VLG PAS+  +ERDFS A+    R+R S+ P Y EM +FLRA YD+IP+  PK  A+E ++  AIP RLR
Sbjct:  655 IPSDKRG----KDAADYWSTPHGKSQPLPLRAVAQGVLGCPASTGAMERDFSIADMFMPRKRASVDPAYFEMSLFLRAQYDFIPDDVPKF-ANEAEQTAAIPNRLR 755
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1898.4742.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KVU5_9PHAE3.640e-1546.15Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KX27_9PHAE1.720e-1444.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008906HAT, C-terminal dimerisation domainPFAMPF05699Dimer_Tnp_hATcoord: 29..87
e-value: 2.1E-8
score: 33.8
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 16..90

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1898contigH-paniculata_contig1898:5106..5450 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1898.4742.1mRNA_H-paniculata_contig1898.4742.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig1898 5106..5450 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig1898.4742.1 ID=prot_H-paniculata_contig1898.4742.1|Name=mRNA_H-paniculata_contig1898.4742.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=115bp
HAHFDVFSVVNIPSQYRGLSGGEQLVDFWLSYGRQKFRLLSKAARSVLGS
PASSAVLERDFSEAEKLRSRQRGSLSPTYGEMVMFLRAVYDYIPEATPKM
TADEVDEAIPFRLRG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008906HATC_C_dom
IPR012337RNaseH-like_sf