mRNA_H-paniculata_contig1898.4742.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1898.4742.1
Unique NamemRNA_H-paniculata_contig1898.4742.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1898.4742.1 vs. uniprot
Match: A0A6H5KVU5_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVU5_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 3.640e-15
Identity = 42/91 (46.15%), Postives = 58/91 (63.74%), Query Frame = 1 
Query:   67 EQLVDFWLSYGRQKFRLLSKAARSVLGSPASSAVLERDFSEAEKLRSRQRGSLSPTYGEMVMFLRAVYDYIPEATPKMTADEVDEAIPFRL 339
            E L++FW   G+  +  +++AAR +L  PASSAVLERDFS A +L +  R  LS  Y EMV+FL    +YIP   PK++  +  EA+P RL
Sbjct:  710 EVLLEFWAGEGQALYPNMARAARVLLSVPASSAVLERDFSTAGRLITGARSRLSAAYVEMVLFLNGNQEYIPMEVPKLSKSQGQEAVPRRL 800
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BLAST of mRNA_H-paniculata_contig1898.4742.1 vs. uniprot
Match: A0A6H5KX27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX27_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 1.720e-14
Identity = 47/106 (44.34%), Postives = 65/106 (61.32%), Query Frame = 1 
Query:   34 IPSQYRGLSGGEQLVDFWLS-YGRQKFRLLSKAARSVLGSPASSAVLERDFSEAEKLRSRQRGSLSPTYGEMVMFLRAVYDYIPEATPKMTADEVDE--AIPFRLR 342
            IPS  RG    +   D+W + +G+ +   L   A+ VLG PAS+  +ERDFS A+    R+R S+ P Y EM +FLRA YD+IP+  PK  A+E ++  AIP RLR
Sbjct:  655 IPSDKRG----KDAADYWSTPHGKSQPLPLRAVAQGVLGCPASTGAMERDFSIADMFMPRKRASVDPAYFEMSLFLRAQYDFIPDDVPKF-ANEAEQTAAIPNRLR 755
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1898.4742.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KVU5_9PHAE3.640e-1546.15Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KX27_9PHAE1.720e-1444.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1898contigH-paniculata_contig1898:5106..5450 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size345
Cds size345
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929455.5310264-CDS-H-paniculata_contig1898:5105..54501622929455.5310264-CDS-H-paniculata_contig1898:5105..5450Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1898 5106..5450 +
1691480868.923738-CDS-H-paniculata_contig1898:5105..54501691480868.923738-CDS-H-paniculata_contig1898:5105..5450Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1898 5106..5450 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1898.4742.1prot_H-paniculata_contig1898.4742.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1898 5106..5450 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1898.4742.1

>prot_H-paniculata_contig1898.4742.1 ID=prot_H-paniculata_contig1898.4742.1|Name=mRNA_H-paniculata_contig1898.4742.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=115bp
HAHFDVFSVVNIPSQYRGLSGGEQLVDFWLSYGRQKFRLLSKAARSVLGS
PASSAVLERDFSEAEKLRSRQRGSLSPTYGEMVMFLRAVYDYIPEATPKM
TADEVDEAIPFRLRG
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mRNA from alignment at H-paniculata_contig1898:5106..5450+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1898.4742.1 ID=mRNA_H-paniculata_contig1898.4742.1|Name=mRNA_H-paniculata_contig1898.4742.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=345bp|location=Sequence derived from alignment at H-paniculata_contig1898:5106..5450+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACGCACACTTTGATGTATTCTCCGTTGTAAATATTCCTTCTCAATATCG
GGGGTTATCGGGCGGGGAGCAGCTGGTCGACTTCTGGCTTTCATACGGAA
GACAGAAGTTCAGACTGCTAAGCAAGGCGGCGCGCAGTGTGCTAGGTTCG
CCAGCCTCGTCTGCAGTTTTGGAGCGCGACTTCAGCGAAGCTGAGAAGCT
CCGCAGCCGACAACGTGGATCCCTCAGTCCAACCTACGGCGAGATGGTGA
TGTTCCTCCGTGCTGTATACGACTACATCCCGGAGGCCACTCCAAAGATG
ACTGCGGATGAGGTCGATGAAGCTATCCCATTTCGGTTGAGGGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig1898:5106..5450+

>mRNA_H-paniculata_contig1898.4742.1 ID=mRNA_H-paniculata_contig1898.4742.1|Name=mRNA_H-paniculata_contig1898.4742.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=690bp|location=Sequence derived from alignment at H-paniculata_contig1898:5106..5450+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACGCACACTTTGATGTATTCTCCGTTGTAAATATTCCTTCTCAATATCG
GGGGTTATCGGGCGGGGAGCAGCTGGTCGACTTCTGGCTTTCATACGGAA
GACAGAAGTTCAGACTGCTAAGCAAGGCGGCGCGCAGTGTGCTAGGTTCG
CCAGCCTCGTCTGCAGTTTTGGAGCGCGACTTCAGCGAAGCTGAGAAGCT
CCGCAGCCGACAACGTGGATCCCTCAGTCCAACCTACGGCGAGATGGTGA
TGTTCCTCCGTGCTGTATACGACTACATCCCGGAGGCCACTCCAAAGATG
ACTGCGGATGAGGTCGATGAAGCTATCCCATTTCGGTTGAGGGGACACGC
ACACTTTGATGTATTCTCCGTTGTAAATATTCCTTCTCAATATCGGGGGT
TATCGGGCGGGGAGCAGCTGGTCGACTTCTGGCTTTCATACGGAAGACAG
AAGTTCAGACTGCTAAGCAAGGCGGCGCGCAGTGTGCTAGGTTCGCCAGC
CTCGTCTGCAGTTTTGGAGCGCGACTTCAGCGAAGCTGAGAAGCTCCGCA
GCCGACAACGTGGATCCCTCAGTCCAACCTACGGCGAGATGGTGATGTTC
CTCCGTGCTGTATACGACTACATCCCGGAGGCCACTCCAAAGATGACTGC
GGATGAGGTCGATGAAGCTATCCCATTTCGGTTGAGGGGA
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