mRNA_H-paniculata_contig1896.4738.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1896.4738.1
Unique NamemRNA_H-paniculata_contig1896.4738.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1896.4738.1 vs. uniprot
Match: D8LIJ7_ECTSI (Choline transporter-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIJ7_ECTSI)

HSP 1 Score: 352 bits (904), Expect = 2.260e-115
Identity = 177/233 (75.97%), Postives = 205/233 (87.98%), Query Frame = 1 
Query:    1 VDSGTFCTSLSEGLRYHTGTAAFGSLVIAIIKMIRAVLTYIQKKLRHSGNKLAQAIMCCLSCFFWLLEKCVKFINKNAYVQVAIFSTNFCTSSKNAFWLIARNLGRVGAVTVVTEFVVFIMKLVIGLGTAGATYVFLQEYMSDELYSPVGPVLFAGALAFYVASSFAGLLGMTTVTILQCFIADEEMFDVGDRYARNDLKEWLRKHG-KDDPSAPPSPRFSPKRKNKAKGQGG 696
            V++GTF  SL EGLR+HTGTAAFGSL+IAIIK IRA+LTY+QKKL+ SG+K AQA++CCLSCFFW LEKCVKFINKNAY+QVAIFST+FC SSKNAFWLIARNLGRVGAVTVVT+FVVFIMKLVIGLGTAGATYVFLQ +M D+LYSP+GPV FAG +A+YVASSFA LLGMTT+TILQCFIADEEMF+  DRYARNDLK+WL  HG  ++PS+P +P+    RK   + +GG
Sbjct:  414 VNNGTFWKSLKEGLRFHTGTAAFGSLIIAIIKTIRAMLTYMQKKLQKSGSKAAQAVLCCLSCFFWCLEKCVKFINKNAYIQVAIFSTSFCRSSKNAFWLIARNLGRVGAVTVVTDFVVFIMKLVIGLGTAGATYVFLQNFMKDDLYSPMGPVFFAGVMAYYVASSFAALLGMTTLTILQCFIADEEMFEGEDRYARNDLKDWLDAHGVNEEPSSPRTPKKKGGRKGGEEKEGG 646
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BLAST of mRNA_H-paniculata_contig1896.4738.1 vs. uniprot
Match: A0A6H5L007_9PHAE (Choline transporter-like protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L007_9PHAE)

HSP 1 Score: 289 bits (740), Expect = 2.680e-90
Identity = 150/224 (66.96%), Postives = 178/224 (79.46%), Query Frame = 1 
Query:   64 AFGSLVIAIIKM-----------IRAVLTYIQKKLRHSGNKLAQAIMCCLSCFFWLLEKCVKFINKNAYVQVAIFSTNFCTSSKNAFWLIARNLGRVGAVTVVTEFVVFIMKL---------------VIGLGTAGATYVFLQEYMSDELYSPVGPVLFAGALAFYVASSFAGLLGMTTVTILQCFIADEEMFDVGDRYARNDLKEWLRKHG-KDDPSAPPSPR 654
            A G +V+A+  +           IRAVLTY+QKKL+ SG+K AQA++CCLSCFFW LEKCV+FINKNAY+QVAIFST+FC SSKNAFWLIARNLGRVGAVTVVT+FVVFIMKL               VIGLGTAG TYVFLQ++M ++LYSP+GPV FAG +A+YVASSFA LLGMTT+TILQCFIADEEMF+  DRYARNDLK+WL  HG  ++PS+P +P+
Sbjct:  465 AMGQIVVALTVVKYYFTRDVETTIRAVLTYMQKKLQKSGSKAAQAVLCCLSCFFWCLEKCVRFINKNAYIQVAIFSTSFCRSSKNAFWLIARNLGRVGAVTVVTDFVVFIMKLLCITPTCIFRVKLTQVIGLGTAGVTYVFLQKFMKEDLYSPMGPVFFAGVMAYYVASSFAALLGMTTLTILQCFIADEEMFEGEDRYARNDLKDWLDAHGVNEEPSSPRTPK 688
[Close]
BLAST of mRNA_H-paniculata_contig1896.4738.1 vs. uniprot
Match: A0A835Z6J7_9STRA (Choline transporter-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6J7_9STRA)

HSP 1 Score: 253 bits (645), Expect = 7.620e-77
Identity = 123/207 (59.42%), Postives = 159/207 (76.81%), Query Frame = 1 
Query:    1 VDSGTFCTSLSEGLRYHTGTAAFGSLVIAIIKMIRAVLTYIQKKLRHSGNKLAQAIMCCLSCFFWLLEKCVKFINKNAYVQVAIFSTNFCTSSKNAFWLIARNLGRVGAVTVVTEFVVFIMKLVIGLGTAGATYVFLQEYMSDELYSPVGPVLFAGALAFYVASSFAGLLGMTTVTILQCFIADEEMFDVGDRYARNDLKEWLRKHG 621
            + SGTF  ++ +G+ YH GTAAFGSL+IAII+MIRA++ + QKK + SGNK+AQ  +CC  C FW L+KC++FINKNAY+Q A+FST FC S K AF+LIARN+ RVGAV++V+EF++ IMKLVI L T  ATY+ L   + +EL+S VGP +F G LA+ VAS FA L  MTT TILQCFIADEEM+   +RYA NDLK+++  HG
Sbjct:  405 LGSGTFFKAMKDGMWYHMGTAAFGSLIIAIIQMIRAIIAWFQKKAKASGNKIAQYALCCCQCCFWCLQKCMQFINKNAYIQTALFSTGFCKSGKEAFFLIARNIVRVGAVSMVSEFMIIIMKLVICLATMAATYLGLDATIGNELHSFVGPTIFVGVLAYLVASVFAELFSMTTATILQCFIADEEMYSPAERYADNDLKDFVNTHG 611
[Close]
BLAST of mRNA_H-paniculata_contig1896.4738.1 vs. uniprot
Match: A0A6H5JW76_9PHAE (Choline transporter-like protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW76_9PHAE)

HSP 1 Score: 224 bits (571), Expect = 3.280e-66
Identity = 108/207 (52.17%), Postives = 143/207 (69.08%), Query Frame = 1 
Query:    1 VDSGTFCTSLSEGLRYHTGTAAFGSLVIAIIKMIRAVLTYIQKKLRHSGNKLAQAIMCCLSCFFWLLEKCVKFINKNAYVQVAIFSTNFCTSSKNAFWLIARNLGRVGAVTVVTEFVVFIMKLVIGLGTAGATYVFLQEYMSDELYSPVGPVLFAGALAFYVASSFAGLLGMTTVTILQCFIADEEMFDVGDRYARNDLKEWLRKHG 621
            V S T  +S+ +   +H GTAAFG L++AI++MIRA+LTYIQKK   SGNK+ Q I CC  C FW LE C++FINKNAYVQ AIFSTNFCTS++NAF+LIARN+ RV AVT++ EFV+ +M + + + T    YV +   +  +L S VGP +    LA+Y      G+ GM   TILQCF+ADEE+F    ++A NDL+ W+ KHG
Sbjct:  384 VGSLTVVSSVGKTFAFHIGTAAFGGLIVAIVEMIRAILTYIQKKAEKSGNKVVQYIACCCVCCFWCLENCLRFINKNAYVQTAIFSTNFCTSARNAFYLIARNIARVAAVTILGEFVLNVMTVFVCIVTTLGVYVAMDSNIRSQLNSLVGPTIMTAVLAYYTGKMVTGVYGMAITTILQCFVADEELFPPTQQFAENDLRGWVDKHG 590
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BLAST of mRNA_H-paniculata_contig1896.4738.1 vs. uniprot
Match: A0A7S2HA85_9STRA (Choline transporter-like protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HA85_9STRA)

HSP 1 Score: 212 bits (539), Expect = 4.720e-61
Identity = 102/210 (48.57%), Postives = 142/210 (67.62%), Query Frame = 1 
Query:    1 VDSGTFCTSLSEGLRYHTGTAAFGSLVIAIIKMIRAVLTYIQKKLRHSGNKLAQAIMCCLSCFFWLLEKCVKFINKNAYVQVAIFSTNFCTSSKNAFWLIARNLGRVGAVTVVTEFVVFIMKLVIGLGTAGATYVFLQEYMSDELYSPVGPVLFAGALAFYVASSFAGLLGMTTVTILQCFIADEEMFDVGDRYARNDLKEWLRKHGKDD 630
            VDSGT   SL +   YH GTAAFGSL++AIIK+IR+++ Y Q+K + + +K+A  ++CC    FW LEKC++F+NKNAY+  AIFST+FCTS+K AF+LI RN  R+GA+  V+  V+F+ K  I   T    Y+ + + +  EL S VGPV+    +A+ VA+ F  +  M   TILQCFIADEEMFD  + YA  DL+EW+ K+ + D
Sbjct:  466 VDSGTVWESLCDSCWYHMGTAAFGSLILAIIKIIRSIIAYFQEKAKEADSKIAGCVLCCCQXXFWCLEKCIRFLNKNAYIHTAIFSTSFCTSAKEAFFLILRNALRIGAIEYVSGAVIFVGKAFIACLTGACAYILIDQQIGHELDSVVGPVILVVLMAYSVAAMFMSVFDMGIATILQCFIADEEMFDGDEMYAEGDLREWIDKYDESD 675
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BLAST of mRNA_H-paniculata_contig1896.4738.1 vs. uniprot
Match: A0A7S4QYJ3_9STRA (Choline transporter-like protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QYJ3_9STRA)

HSP 1 Score: 194 bits (493), Expect = 2.170e-58
Identity = 99/213 (46.48%), Postives = 139/213 (65.26%), Query Frame = 1 
Query:    1 VDSGTFCTSLSEGLRYHTGTAAFGSLVIAIIKMIRAVLTYIQKKLRHSGNKLAQAIMCCLSCFFWLLEKCVKFINKNAYVQVAIFSTNFCTSSKNAFWLIARNLGRVGAVTVVTEFVVFIMKLVIGLGTAGATYVFLQEYMSDELYSPVGPVLFAGALAFYVASSFAGLLGMTTVTILQCFIADEEMFDVGDRYARNDLKEWLRKHGKDDPSA 639
            V SG    S+ +   YH GTAAFG+L++AIIK+IR ++ Y QKK + + +K+A A++CC  C F+ LEKCVKF+NKNAY+  AIF+TNFCTS++ AF+LI RN  R+GA+  V+  V+F+ K  I   T G  Y  +   +  EL S VGP++    LA+ V++ F  +  +   TILQCFIADEEMFD    YA   L+ ++ K+   DPS+
Sbjct:   46 VGSGQVWESVCDVCWYHMGTAAFGALILAIIKLIRTIIAYFQKKAKEADSKIATAVLCCCQCCFYCLEKCVKFLNKNAYIHTAIFATNFCTSAREAFFLILRNAARIGAIGYVSGAVIFVGKAFIASLTGGLAYFAIDTQIGMELNSIVGPIVLIILLAYSVSAMFMSVFDLGIATILQCFIADEEMFDGDQMYAEGSLRAYIDKY---DPSS 255
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BLAST of mRNA_H-paniculata_contig1896.4738.1 vs. uniprot
Match: B8C577_THAPS (Choline transporter-like protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C577_THAPS)

HSP 1 Score: 194 bits (492), Expect = 1.560e-57
Identity = 92/186 (49.46%), Postives = 132/186 (70.97%), Query Frame = 1 
Query:    1 VDSGTFCTSLSEGLRYHTGTAAFGSLVIAIIKMIRAVLTYIQKKLRHSGNKLAQAIMCCLSCFFWLLEKCVKFINKNAYVQVAIFSTNFCTSSKNAFWLIARNLGRVGAVTVVTEFVVFIMKLVIGLGTAGATYVFLQEYMSDELYSPVGPVLFAGALAFYVASSFAGLLGMTTVTILQCFIADEE 558
            + S T  TS++  + YH+GTAAFGSL+IAIIKMIR+ L Y+Q+K     + +A+A++CC       LEKC++F+NKNAY+Q AIF ++FCTS+K AF+LI RN  R+ A+T V+  V+FI K+ I   T GA YV++ + + DELYS +GP+ F  A+++++A  F G+  M   TILQCF+ADEE
Sbjct:  129 IGSATVWTSIATSMWYHSGTAAFGSLIIAIIKMIRSFLAYLQRKAEEMDSSIAKAVLCCFQXXXXXLEKCMRFLNKNAYIQTAIFGSSFCTSAKEAFFLILRNAARIAAITYVSGGVMFIGKVFITSLTTGAAYVYMDQEIGDELYSIIGPLFFIAAISWFIAGMFMGVYDMGIATILQCFVADEE 314
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BLAST of mRNA_H-paniculata_contig1896.4738.1 vs. uniprot
Match: A0A1Z5JIP5_FISSO (Choline transporter-like protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JIP5_FISSO)

HSP 1 Score: 202 bits (514), Expect = 1.980e-57
Identity = 100/207 (48.31%), Postives = 139/207 (67.15%), Query Frame = 1 
Query:    1 VDSGTFCTSLSEGLRYHTGTAAFGSLVIAIIKMIRAVLTYIQKKLRHSGNKLAQAIMCCLSCFFWLLEKCVKFINKNAYVQVAIFSTNFCTSSKNAFWLIARNLGRVGAVTVVTEFVVFIMKLVIGLGTAGATYVFLQEYMSDELYSPVGPVLFAGALAFYVASSFAGLLGMTTVTILQCFIADEEMFDVGDRYARNDLKEWLRKHG 621
            V S T  +S+ E + YH GT A+GSL++AI++ IR ++  +QKK + + NK+A+ I+CC  C FW LE+C+KFINKNAY+Q AIFST+FC S + +F+LI RN  RVGAVT V+  V+ I KL I   T G  Y+ + E +SDEL+S  GPV     +A++++  F G+  M   T+L CFIADEEMF     YA   LK+++ KHG
Sbjct:  470 VGSWTVISSVRETVTYHLGTCAYGSLLVAIVQFIRYIIAKLQKKAKETQNKIAEYILCCCQCCFWCLERCLKFINKNAYIQTAIFSTSFCKSCRASFFLIFRNAARVGAVTYVSSAVLIIGKLFISAVTTGFAYIAITERLSDELFSVGGPVTITFLIAYWMSDFFMGVFDMAISTVLHCFIADEEMFGGNGSYADQHLKDYVDKHG 676
[Close]
BLAST of mRNA_H-paniculata_contig1896.4738.1 vs. uniprot
Match: W7TBK4_9STRA (Choline transporter-like protein n=6 Tax=Monodopsidaceae TaxID=425072 RepID=W7TBK4_9STRA)

HSP 1 Score: 201 bits (512), Expect = 5.070e-57
Identity = 95/207 (45.89%), Postives = 141/207 (68.12%), Query Frame = 1 
Query:    1 VDSGTFCTSLSEGLRYHTGTAAFGSLVIAIIKMIRAVLTYIQKKLRHSGNKLAQAIMCCLSCFFWLLEKCVKFINKNAYVQVAIFSTNFCTSSKNAFWLIARNLGRVGAVTVVTEFVVFIMKLVIGLGTAGATYVFLQEYMSDELYSPVGPVLFAGALAFYVASSFAGLLGMTTVTILQCFIADEEMFDVGDRYARNDLKEWLRKHG 621
            + SGT C ++     YH GTAAFGSLVIA+++ IR+++ YIQK L+ S NK+AQ ++CC  C FW LEK +KF+NKNAY+Q A+  T+FCTS K AF+LIARN+ R+GAV++V+EFV+ I K+ + +     ++  +  ++ D ++SP+GP +    LA++ A  F  +  M    +LQ FIADEEMF  G+RYA   L  ++ ++G
Sbjct:  446 IGSGTLCKAVGITGLYHLGTAAFGSLVIAVVEAIRSIIAYIQKILKRSENKVAQYLLCCCQCGFWCLEKILKFVNKNAYIQTAVNGTSFCTSGKMAFFLIARNIMRIGAVSLVSEFVIIIGKVFVSVTAGAISFYTMTFFLEDRIHSPIGPTILVVILAWFTADMFCQIFSMAVSALLQAFIADEEMFGPGERYASTALAVYIDENG 652
[Close]
BLAST of mRNA_H-paniculata_contig1896.4738.1 vs. uniprot
Match: A0A7S2V489_9STRA (Choline transporter-like protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V489_9STRA)

HSP 1 Score: 195 bits (495), Expect = 6.240e-57
Identity = 97/209 (46.41%), Postives = 140/209 (66.99%), Query Frame = 1 
Query:    1 VDSGTFCTSLSEGLRYHTGTAAFGSLVIAIIKMIRAVLTYIQKKLRHSGNKLAQAIMCCLSCFFWLLEKCVKFINKNAYVQVAIFSTNFCTSSKNAFWLIARNLGRVGAVTVVTEFVVFIMKLVIGLGTAGATYVFLQEYMSDELYSPVGPVLFAGALAFYVASSFAGLLGMTTVTILQCFIADEEMFDVGDRYARNDLKEWLRKHGKD 627
            + S T   S+   + YH+GT AFGSL+IAIIK IRAV++YIQKK   SGNK+A A++CC+      +EKC+KF+NKNAY+Q AI+  +FC +++ AF+LIARN+ R+ AV +V  +V+FI K+VI L      ++ +   MSD+L+    P +F   LA++V+  F  + GM   TILQCF+ADEEM++  +R+A  DL   + K  KD
Sbjct:  166 IGSSTVFKSIKMSMWYHSGTCAFGSLIIAIIKTIRAVVSYIQKKAAKSGNKIAVALLCCIQXXXXXIEKCMKFLNKNAYIQTAIYGYSFCKAARKAFFLIARNILRITAVALVGNYVLFIGKMVITLLATFLAFLVMDSTMSDKLHGLYAPTIFTFILAYFVSLMFVEVFGMAIYTILQCFVADEEMYEPAERFATGDLATTINKTNKD 374
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1896.4738.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIJ7_ECTSI2.260e-11575.97Choline transporter-like protein n=1 Tax=Ectocarpu... [more]
A0A6H5L007_9PHAE2.680e-9066.96Choline transporter-like protein n=1 Tax=Ectocarpu... [more]
A0A835Z6J7_9STRA7.620e-7759.42Choline transporter-like protein n=1 Tax=Tribonema... [more]
A0A6H5JW76_9PHAE3.280e-6652.17Choline transporter-like protein n=1 Tax=Ectocarpu... [more]
A0A7S2HA85_9STRA4.720e-6148.57Choline transporter-like protein n=1 Tax=Helicothe... [more]
A0A7S4QYJ3_9STRA2.170e-5846.48Choline transporter-like protein n=1 Tax=Ditylum b... [more]
B8C577_THAPS1.560e-5749.46Choline transporter-like protein (Fragment) n=1 Ta... [more]
A0A1Z5JIP5_FISSO1.980e-5748.31Choline transporter-like protein n=2 Tax=Fistulife... [more]
W7TBK4_9STRA5.070e-5745.89Choline transporter-like protein n=6 Tax=Monodopsi... [more]
A0A7S2V489_9STRA6.240e-5746.41Choline transporter-like protein n=1 Tax=Fibrocaps... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1896contigH-paniculata_contig1896:14808..23680 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score351.7
Seed ortholog evalue2.7e-94
Seed eggNOG ortholog2880.D8LIJ7
KEGG koko:K06515,ko:K15377
KEGG TC2.A.92.1,2.A.92.1.1
KEGG Pathwayko05231,map05231
Hectar predicted targeting categoryother localisation
EggNOG free text desc.choline transmembrane transporter activity
EggNOG OGsKOG1362@1,KOG1362@2759
Ec32 ortholog descriptionCholine transporter-like
Ec32 orthologEc-18_003370.1
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000,ko04090,ko04147
Exons5
Model size696
Cds size696
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1896.4738.1prot_H-paniculata_contig1896.4738.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1896 14808..23680 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929454.8681993-CDS-H-paniculata_contig1896:14807..149871622929454.8681993-CDS-H-paniculata_contig1896:14807..14987Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1896 14808..14987 -
1691480868.599019-CDS-H-paniculata_contig1896:14807..149871691480868.599019-CDS-H-paniculata_contig1896:14807..14987Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1896 14808..14987 -
1622929454.883029-CDS-H-paniculata_contig1896:16889..170361622929454.883029-CDS-H-paniculata_contig1896:16889..17036Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1896 16890..17036 -
1691480868.6096833-CDS-H-paniculata_contig1896:16889..170361691480868.6096833-CDS-H-paniculata_contig1896:16889..17036Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1896 16890..17036 -
1622929454.8988352-CDS-H-paniculata_contig1896:18791..189171622929454.8988352-CDS-H-paniculata_contig1896:18791..18917Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1896 18792..18917 -
1691480868.6176507-CDS-H-paniculata_contig1896:18791..189171691480868.6176507-CDS-H-paniculata_contig1896:18791..18917Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1896 18792..18917 -
1622929454.9128106-CDS-H-paniculata_contig1896:19272..194191622929454.9128106-CDS-H-paniculata_contig1896:19272..19419Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1896 19273..19419 -
1691480868.6263144-CDS-H-paniculata_contig1896:19272..194191691480868.6263144-CDS-H-paniculata_contig1896:19272..19419Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1896 19273..19419 -
1622929454.9319339-CDS-H-paniculata_contig1896:23584..236801622929454.9319339-CDS-H-paniculata_contig1896:23584..23680Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1896 23585..23680 -
1691480868.635624-CDS-H-paniculata_contig1896:23584..236801691480868.635624-CDS-H-paniculata_contig1896:23584..23680Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1896 23585..23680 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1896.4738.1

>prot_H-paniculata_contig1896.4738.1 ID=prot_H-paniculata_contig1896.4738.1|Name=mRNA_H-paniculata_contig1896.4738.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=232bp
VDSGTFCTSLSEGLRYHTGTAAFGSLVIAIIKMIRAVLTYIQKKLRHSGN
KLAQAIMCCLSCFFWLLEKCVKFINKNAYVQVAIFSTNFCTSSKNAFWLI
ARNLGRVGAVTVVTEFVVFIMKLVIGLGTAGATYVFLQEYMSDELYSPVG
PVLFAGALAFYVASSFAGLLGMTTVTILQCFIADEEMFDVGDRYARNDLK
EWLRKHGKDDPSAPPSPRFSPKRKNKAKGQGG
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mRNA from alignment at H-paniculata_contig1896:14808..23680-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1896.4738.1 ID=mRNA_H-paniculata_contig1896.4738.1|Name=mRNA_H-paniculata_contig1896.4738.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=8873bp|location=Sequence derived from alignment at H-paniculata_contig1896:14808..23680- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTAGACAGTGGCACTTTTTGCACGTCGTTGAGCGAAGGGTTGAGGTATCA
CACGGGCACGGCGGCTTTTGGTAGTCTCGTCATCGCCATCATCAAGGTAA
ATATGCATTCGTGTATCTGATTTCTGCTTTCGTATTTTTACTTCTTATAC
ATGAGTTGTAGCCTGATAGCTCTATCGCTGCCATCTTTGTTTTTATGTTT
CTGACACCAGCATATATATATATATATATATATATATATATATATATATA
TATATAGTCGGCATCGTAGTACATGCTATTATTTTTGACATCTGGTTTGT
AAATGTATTTTGAGGCGATCGCTTCTTATCAGTGCAATCGCAAATGCCGT
TTGTTCTGCAGTTTTGGCTCAGCGTAACCGTGTAAAAGCGGCGAACACAA
GTTTTCTTGATTCTATCTTGGCACCGAAATTACCCACACCTTGGTCGCTG
GACGGCACAGCACCGCTAGTTGTCTGGTGTGAAATCGCCATCTTGGCATC
GAGTGCACCGCACCGGCGGTGCTTACCCTCTCCGGTGGTAGTTTCTACAG
AGCGCCCATAAGAACTTCTTGTTTTCTCTGTCGCTCGCTCTGACGGATAT
TTTGATCAGCTTTTGACGAGGATAGTGGTTGGCTATCGATCAAAATATTC
AACGTTTGACGCCTTCCTCTACCTCCCGGAAAGAGATGAATAGGCCAAGT
TCTACCGAGGTTGTCAAGCTTACCCCCTCATACACATGCATGCCCATACT
AAAACCAGTATAATAAGCACGTCTCAAATGAACGTACTTATATTAATCGA
CTGACATCATAATCGGTGATTGGACTTCCGACAGTATCCATTCACACTCC
GCTTTTATGGTGACAATTCACAAGGACGCGGATGAAAAACGGGGAAGACC
CTAAGTAGAGTGCAAACATTTCGGAAGGTTTTGGATCTGCGAATTATTGG
GCTTAGACTCTTGAACCCGCACGTCTTCCAGATCGTATCCCCAGGATTCA
TTGGTTTAAACTATGTATGCGCACGTTGTATCTAGTAAAGAAAAATGGTT
GCGGAAATCACCTGAAAGTTCGCCTTATCATAGTCCTTCTTTTATCCAGT
ATTTGTGAATTAATCGAGGGTGATCAAGGTAGCCTAAATATTGGAGTGGG
CGCTTTCTGAAGAACGCCACCACGAGGATTCTACTTTAGCCTCCCCTACA
TAGGTGGCATTGGCCTCATAATCTGGTATAACACCTTGAACGCGTTGAAG
GGTTGAAGCATTGTCGTATGTATATACACAATGTTAGATAGGGAATACAG
TACACGAATCAAAGAAAGACATTTGATTTTTAGAAATCCAGGGTTCACAG
TTTTCGGACTTCCTTACGAAGTTTCTGCTAAAACGATGGTCCCCGAAGTG
TGCCCTGATACTAATTCCTATATAGTGAAGAGCATAGCTCATAATACGGG
CGAGACTGCTGTAGATACGCACGGTGTAAGGCTCACGCCAGATTACGGCT
TGTTTCAGCTGTCGTGTACTGTGCTGTTTATTCGTCCATTCAGTACATTG
CAGAAGTGTGCGATTGATTGCCACTAATACTTACAAAGCATATATCCTTG
CTTTAGAGAGTGTTTCCTTGTTTTTCTCTGCTTCCTTTCGTCTTGGTGAA
ATGCTGTGCGTGCAGATGTTACGGTGGTGTCTCATATTAGATGCACTGGG
TCTTGAAACTTCCCGCAAAACAGGAAAACAACATATATTTAAAGAAATCA
AAATAACACAGTTCAGTTAACGCCTGAAAAACAGAATTATCAGAATTGCT
AGTCAACCTGCAAGTATTGTCCATCTGGATCCGATAATATATATATATAT
ATATACACCCTCTGTCCCATAAGTCTGTTCCGTTAGTTATTTACCGAATA
TCTCTTCAGGATGGTGTCCGATTTCAAAACGGATGGTTGCGTTGGATTCC
ACGACGTTCTTCCCGTCAAAACACGTTTTTGTTCTGACTAATTGTTCAGA
AAATTTTCCCAAAAACAATCGTAGTTCTTTTCGACCTTTTCGTCACTCGG
GACTGTTTTTTTGGCTCATTGTAAGTGATTCAGCAGCACGCTGTAGTCGC
CCACTACTTTCGCAACCTCATTCCTTGGTCCCGGGACCCCACAAGCGCTA
CCACTCTATCCTGCCAACCCTTGGACTGCCTACAATAGCCCGTTCAAGAG
ACCTGATGGCGAGCCCTCAGAGCCCGTCCACCGGGATCGAATCTCCATCA
GCTGGTGGGAGCTCTTCATCTCGTCGCAGTGGCGACAATTGCGAGCTGAG
CGAGGAGGGCCGCAACGCGTTTGCTCTGCGGTACGCGCTGGCTCTCCCTC
CCGGCAAAGTGAGGCTCCCAGCCGGCGTCGGGTCGAAGTTGACTGAAGAA
TTCGGGGTCACTGAGAGGTACCCGCGGTTGATGTAGGCGAGCGGGAAAAA
ACAACTCGACGAAGGGAATGTGGTCTCTCTGAAAACACGGGGGAGACCTG
ACCAGCCGTCGGACTTTTCGCCGCGAAAACAGGGCAACATCCGAGAAATC
AACGCCGAAAATTGCACGATGACGCTGGACCAACTATCCGCCAAGATTGT
CGAGGTCGATCTTACTGTCGACAGCAGCAAGCTTGCTTGCTGGCTCAAAA
CTCATGGTGGCAACGAGGGTTCAGCGACGGATAAACTCCTCGATTTCTTT
CGACCACAAAAAGAACGCGTGGACTTCATCCTCGACTACATTTCCCGCAA
TCGCAGAACGTTCACGACCGGCTTCAACACAATCAACTTTGACGAGGCGT
GGTTCTACTTCATTCGCGAAAAGAAAAAGGTGCGAATGTTCTCCAGGGAA
GAAAAAGTTGGCTCGATCAAGGTGCAACACAAGAGTTACATCCCCAAAGT
GATATTTATCTGCGCCGTGTCGCGCCCCGATCCTCATCATGTCTTCGACG
GAAATATCGGAATCTGGCGCATCTGCACAATGAGAGAGGCACAAAAGGCT
ACCGCGCTGCGCGCTAGGGGCGACACGTGCGAGGTCGACGTCACTATCGA
CGCAATGACCTCTTGCCGGAGGCTAAGGAGAAGATGTGGTGGCTCGAGGG
GAAGAGGTTATCGCGCAATAAGACGACGCGACGCCCCACACGGGCAAGGG
TACGCCACAAGCCTTAAACAGCGCGGGGATGAAGGGGGAGTGGAGTGTGA
AGCTCGAAACGCAACCTGCGCAATCGCCCGATCTCAACATCAACGATTTG
GGATTTTTGGCGTCTCTGAAGAGTAGGGTATGAGGAGAGCATGTACGACG
CCCACAATGTAGACACGTTAGAGAGAGTATGGCAAAATCTGTTCAAAAGA
TACAATCAGGTTTTGCGAGCCGTGGGAGGGAACGATTTTGAGGTAGAGCA
CATAGGCACACAAAAGAAGGCAGTAAGAAGAGGGGTTAGCAAAAGCTGTC
CAGACGAACCAAGCTGCCGCCGCGGCGGCGCTCAACTGGAGGCTTGGTGG
TGTTGGCCAAGAATAACACGATAGTTTATTTCGACGGGAAAAACGTCAAG
CAATCCAGCGCGATAATCCGTTTTGAAATCGAACATCATCCTGAAGAGTT
ATGCGGTATATAGCTAATGGAACAGACGTTTGGGGCAGAGGGAGTATATA
TATATATATACAATTAAAAAAATAAAAATATATTTGTCGTGGGGCGTCAA
CTGTTTGTTGTTTTCCTCATGTGTGACGTACGGGTTTTGACTCGTTCGTG
GATGTCATGATACACATAAAGTACTACATGTTGATTGTACAGAGTACATT
GTAATCTGTGAAATATGAGGGATAACACACACACACACACACACACACAT
ATACACATCTTGTGTGGGGAGGATGTGTTCCGACGAATACAGGGATTCCT
AGGCTCCCGTGTCCGATAACACCAGCAAGTCATTTGCAAATTTATACCGT
CCAAAGTGTTGAAAATCATCATGCCTTAGACCTACACGAGACTTGCAAAC
CAAACTATTGGAGAGCTGAATCACACCCACTAGTACAATTGGATCTATTA
TCAGTGTTTTCTCCACAATCACATCCGAAGAGAGAGGGCTGATTCTGCGC
TTGGACAGCGCGACCTAACGGGCCAACCGTCCAAAGTTCACCGTGCTCGT
GCTGTGGCCTCAGGTCTTTGAACGCAATTTTCGTTTTGCTCCCTCTCTTC
CACCCTCCGCCGCCGATCTGTGTGCCCCCGCCACCGGACCGGGTCTGTTT
TGACGTTGTAGATGATCCGCGCGGTTCTGACCTATATCCAGAAGAAGCTC
CGGCATTCGGGAAACAAACTGGCGCAGGCGATTATGTGCTGCCTGTCATG
TTTCTTCTGGCTTCTCGAGAAATGTGTCAAGTTTATCAACAAGAACGCCT
ACGTGCAGGTAAAGGCTATATCAGGGAACTGTTTTCTTTTGTTTTTTTCA
CACATCGGAAGCTGAAATACTCGCCTGTATTGAACCCATGACACCTGTTG
CAAGCAGCTAGTGGTAATAGAGGCTTTGCCAAAAAAATAAATGTTTTTCC
TGTACAGTATCTCACTTGTTTTCGTTCACCTCTGAGGTCCGAGCGATCCG
AACAGCAGGCAATGGTTTGGGTCGCTACGTGAGTATTGTCGCGTGCTTTA
TCCCTCCACCATGTGTAGGCAATTATTGTCGTAAAACGCACAATTTTGCT
TTCTCTTGTGCTTTTATCACTTGGGGTTGCGCGATTGCGGTGACCCCAAA
ATCCGTGACACAGGTGGCGATATTCAGCACAAACTTTTGCACGTCGTCAA
AGAACGCGTTTTGGCTTATCGCGAGAAACCTGGGTCGCGTCGGCGCCGTG
ACAGTGGTAACGGAATTCGTCGTGTTCATCATGAAGCTGGTAGGTGTAGG
AGGTGTACTTGATATTGTCCTTCTTACTTGCTACGGTAAGATCGTCATAG
TCGTCATCGTTTCGGAACAATTTTTCAAATCTGTAGTCAAATAAGTTATG
AAAAATGAATCTTGATGTGAGCGACGATTGGAGCACCATTCTTGTTGCCC
ATGTATGAGGAAGAAACTTACACCAGCGATGGACCCGAGCCAGGAGCATT
GCAAACCCTACTGCCATGAATGAACGAGCGTTGAATGCCGCCGAACAAAA
CATATGAATTGTGCATTTTCTGTTTGCTGTATGTGCTTTTCGCGTATTTT
CTGACGGTGGTTTTCCCCACACAAAGGCCATGTGGAACCGCCATACTATA
CCAAATCCAAAAAGTTGGAGCTTGAAAAACACGAAGTTATTGCTCACGTT
TGCTGGCATGACAGCGCTGCTAAAACGTACGGTGCAATATATGCGAAAAA
AGCACTTTAACATGGCGAAAACGTTGAAAGTTTAAAAAACATTACCCAAA
AATGTCATAAAACGCATTTTTTTCAAGTGTCTTGCGGAGTCAAAGTCTTG
TTTTCCTTCCACACGCATGCCTTGTCCACGCATGCCTCCGTCTTCCCACG
AACGCGTGATAAGTGGCTTAACAGCTGCGACATTCAACACATGAGTACGC
CCCCCCCCCCACCACACACACACGTGCAACGTTGCGGTTCGTAAAACCAC
TTAGAAAAAGGCAAGAAAAGAGAAATGCCGACGAACAATAAAGCCAACGG
TTCGGCATCTTTTGTCGCGCTCTTCAAAATGCTTGCTAATTATATATTTT
CAATCCCTGCATGTTATTGGATCTGGGTCCGTTCTGTCCAAATTCGCTCC
ATCCCGGCCAATAATTCCGTTCCGTTAATATTATTGAAGGGTGCATAATT
TTTTCTTCATCTTGAAATTAATAATCCGTGCGATTCGGATCGTACGAATT
AGTGTCCGACATCATTTTGAAAAAAATATCCATCTCCTACGAATCAGGCG
AGGACAAACATGTGCTCGCGATCCGGATTGTATGCATACGGATCTTCACG
ACTTGTCTGTGGAAATGATTTTCACGATTCGTGAAATGATCCGCACGGCT
ACGACAATACGAGAGTGAATTATGTGCATTTGCGTCGAGCTGCGTGAAAT
CAGCCGCACGGCAGGTTTGGACAAAATCGTACGAATTCGTAGTGGAGAAT
TACGTGTTGACCATCCGGATCTTACAAATCAGTTGCGGGCATACATCCTG
AATATCCGAATCGCACGGATCAGATGTAGACAAACATGCGCCAACGACCG
GGGTCGTAAGGAATACGCATGGACAAACACCAATGAATCTTACGCATCGT
GCAGATGGTTACTGTCTACCCTAACAATGATCTGTGCGATCCGTGAAATA
ATCCTTCCGATCGGTGAACGATCTGTTGATTCGTTCGAGGTGTAGACTAG
CCACTTAACACGTTCTGTATCCCTGCTGCGATTCTCACCCGCCAGATTCC
TCAAACAAAATGTTTTGCGAGAAATAATGCCGATAAAACTCTCCAACGAG
ATGTTCCGGGGGCAGCGTTTCTGAAAGAAACAGAGGTCCTTGGAGTAGAA
TGCAGGACAAGTATTGGTTCAACGGTTACGCTGGTCCAGATATAGCTTTT
TTGTTAGGCACCCACGGGTTCCGTTTCATTTCATTTCTCTCCGATCCGTT
ACGATCCGCTCCGTTTCGGTCCGATCCGGCTGCCGAAAAAATAGGTAATT
GGGCTCGGCACGGCAGGCGCGACCTACGTGTTCCTGCAGGAATACATGAG
CGATGAGCTGTACAGTCCGGTCGGACCCGTGCTGTTCGCCGGAGCGCTAG
CGTTCTACGTAGCTTCCTCCTTCGCCGGTCTGCTCGGCATGGTGAGCAGA
GTAGTGCAACACTGATTTGGTTGGAATATATACATATCGCCGTATTGGAA
CTCAGTGACCAGCACCAGCTTTTGCGTGGAAGAGCGTGAGTAGTGTGTAT
CAGGAGAGATGTATTCTTCTTCGTGCTATGGGGAGTATGACACGATTACG
CAAATAAACAAAAGCATGAAGTCTTTTGTTGCTTTTGTCTGATTTGACGG
TAATTTCGTTGGCGTCGTATTCTAACACGACGGCGAACATATGTGCAAGT
CTGTTATTTTCTACCGTATTGCGAAGCACGGGGTCCAACAGGGGTGTGTT
TTGTGTCGATATAGTGAATGATGAACACAATAATAGCTAGTAGTATTCGT
GTGTTCGGCATAGGTTTCTGATGCCCTTTTTGTATTTCCTGAAACAAGTA
GCAGCAGTCATGAGGCTTTATATAGTTGACTTTTTGTAAACCCTGCACTC
GCCTAATAACGCCCATAATAACTCTGAAGTAGAGACGCCCCTGAGCAGGG
TGAAGTGGACGATAAAAATTGGAAGCTAAAAATGCAACCAATAAATACTG
GTTGGTTCCGAAGCGGATTAACTCTGAACGCTAAACTACCATCGCAGCCG
GATGATTGCATCGCCGAGGTACCACCAAAGCCTCTGATGTGACACTTGTA
GAAAAACTGTTTTCCCGTACAGGATTCTACCCACGGTTACTCTCATACTA
GATACCAACAATGATAGACATCTTCCGTTCAATATCAAAGGGTATGAAAA
TGCATTAAAAAAAAACTCCGATCAATTACTATTAGTTTGAGCCCCATGAG
CCGACGACCAAAGTGTATTTGTTGGACCCTACCTGGAAATGCAATTGCTA
AAGAGTCGTCCTTGCTCTGTCAATCCCACAAAGCTCCACCTCGTTGAGCA
CGCGTGCTCAACGGGCAAACAGCTGAGGCATGTAAAACATGCACCCCCCT
GACGATGTTTGAAATTTACCCATGATTAGATGAAGCTATGATTGTGGGTG
TACTAACTTCGACATAATATTACGTATGTTGTACGTGCAGTAGATGTCGC
GAATCCATCCGGATGAGCCTCCCGGCCATCGCCCCATGTCTACTCTGCGC
GTCTGTCCTAGCCGATCCAACAAGTCAGAACGTACCAGCAACGGTAACGA
CGACGTCGGCAGGTAATGTGTGTCCGCCCGACCCCGACGAACAAAAGCCA
ATCTAGGCAGCTCGACCTTTCCCTCCACGTCGGGAGCAGCGTACGACTCC
ATTTGGCCCGCTTAGAAAGCATTTACACGGCCTTACAGATAGTTATAGCG
AACAGCAGCTTTCGGCCTGAGGAAATCAATCCTCGGGAAGAAACTATCAA
TATGTCGAGAGCAACGGAGATGCTCCCCCCTACCCGCCGCCACCTCTGTG
GAAAACCTCATACGGTTTTGCTTGCTCGTTTTCCCTTTCAACTGCGTTTT
CGGTAGTCACTGCGGCCATTGTACTGAAGAGCATCTGATCTAGTAACTGA
ATTTGTTGTTGTGCGGCAAACCTTGTTGTATTAGCTATTTCCCTTCCAGT
AATCTGGGAATAGTATCTAAATACCCTCCAAGTTTGTGTACGGTGATACA
ACGTGCAGGGTACTAGAAAAATCCGTTTTACGCCATGCTCTTCCTCACAT
TAAACGAAAACGAACGCGACGTTATGGCAGAGGAAACGGTATGAAATAAC
GAGAGAGTTTTGTAGATATGATGGACTTTGAGGCACAATGGAAAAGAGCG
ATCGGCCATCGGCGACCGGTCTTGCAGGAATGCTGCTCCGTTCTCTCGAG
AACCCGTGGCGAACGGTCTAACAGCTAGGGTATGCAAGACACGAGTACCT
CACCCCCCTCCCCCTGTCTTCCTTTCCTTCCCGCCCCCTGCAGACAACCG
TAACGATATTGCAGTGCTTCATTGCCGACGAGGAAATGTTCGATGTGGGA
GATCGTTACGCCCGAAACGACCTGAAGGAATGGCTAAGGAAACACGGCAA
GGATGATCCCAGCGCGCCACCCTCACCTCGCTTTTCGCCGAAGAGAAAGA
ATAAGGCGAAGGGTCAAGGGGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig1896:14808..23680-

>mRNA_H-paniculata_contig1896.4738.1 ID=mRNA_H-paniculata_contig1896.4738.1|Name=mRNA_H-paniculata_contig1896.4738.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1392bp|location=Sequence derived from alignment at H-paniculata_contig1896:14808..23680- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTAGACAGTGGCACTTTTTGCACGTCGTTGAGCGAAGGGTTGAGGTATCA
CACGGGCACGGCGGCTTTTGGTAGTCTCGTCATCGCCATCATCAAGGTAG
ACAGTGGCACTTTTTGCACGTCGTTGAGCGAAGGGTTGAGGTATCACACG
GGCACGGCGGCTTTTGGTAGTCTCGTCATCGCCATCATCAAGATGATCCG
CGCGGTTCTGACCTATATCCAGAAGAAGCTCCGGCATTCGGGAAACAAAC
TGGCGCAGGCGATTATGTGCTGCCTGTCATGTTTCTTCTGGCTTCTCGAG
AAATGTGTCAAGTTTATCAACAAGAACGCCTACGTGCAGATGATCCGCGC
GGTTCTGACCTATATCCAGAAGAAGCTCCGGCATTCGGGAAACAAACTGG
CGCAGGCGATTATGTGCTGCCTGTCATGTTTCTTCTGGCTTCTCGAGAAA
TGTGTCAAGTTTATCAACAAGAACGCCTACGTGCAGGTGGCGATATTCAG
CACAAACTTTTGCACGTCGTCAAAGAACGCGTTTTGGCTTATCGCGAGAA
ACCTGGGTCGCGTCGGCGCCGTGACAGTGGTAACGGAATTCGTCGTGTTC
ATCATGAAGCTGGTGGCGATATTCAGCACAAACTTTTGCACGTCGTCAAA
GAACGCGTTTTGGCTTATCGCGAGAAACCTGGGTCGCGTCGGCGCCGTGA
CAGTGGTAACGGAATTCGTCGTGTTCATCATGAAGCTGGTAATTGGGCTC
GGCACGGCAGGCGCGACCTACGTGTTCCTGCAGGAATACATGAGCGATGA
GCTGTACAGTCCGGTCGGACCCGTGCTGTTCGCCGGAGCGCTAGCGTTCT
ACGTAGCTTCCTCCTTCGCCGGTCTGCTCGGCATGGTAATTGGGCTCGGC
ACGGCAGGCGCGACCTACGTGTTCCTGCAGGAATACATGAGCGATGAGCT
GTACAGTCCGGTCGGACCCGTGCTGTTCGCCGGAGCGCTAGCGTTCTACG
TAGCTTCCTCCTTCGCCGGTCTGCTCGGCATGACAACCGTAACGATATTG
CAGTGCTTCATTGCCGACGAGGAAATGTTCGATGTGGGAGATCGTTACGC
CCGAAACGACCTGAAGGAATGGCTAAGGAAACACGGCAAGGATGATCCCA
GCGCGCCACCCTCACCTCGCTTTTCGCCGAAGAGAAAGAATAAGGCGAAG
GGTCAAGGGGGCACAACCGTAACGATATTGCAGTGCTTCATTGCCGACGA
GGAAATGTTCGATGTGGGAGATCGTTACGCCCGAAACGACCTGAAGGAAT
GGCTAAGGAAACACGGCAAGGATGATCCCAGCGCGCCACCCTCACCTCGC
TTTTCGCCGAAGAGAAAGAATAAGGCGAAGGGTCAAGGGGGC
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